CmoCh19G006850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G006850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr19 : 7259092 .. 7259328 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

mRNA sequence

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

Homology

[Close]

BLAST of CmoCh19G006850 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-24
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1


Query: 2  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 61
          +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKQIESGEVPFPYGRS 78
          +  IE+G VPFP  R+
Sbjct: 64 INSIENGHVPFPNYRT 78

[Close]

BLAST of CmoCh19G006850 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-23
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1


Query: 3  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 62
          SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KQIESGEVPFP 74
          + IE+G VPFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CmoCh19G006850 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-22
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 5  SAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQ 64
          S  GS   W+AK+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++L++D+K 
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGEVPFPYGRS 78
          IESG+VPFP  R+
Sbjct: 63 IESGKVPFPNYRT 75

[Close]

BLAST of CmoCh19G006850 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-21
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S   SA SWT K+NK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL++
Sbjct: 1  MASNSMSSSA-SWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IESG  P P  RS
Sbjct: 61 DVNDIESGRYPHPNYRS 76

[Close]

BLAST of CmoCh19G006850 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S   S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1  MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE+G VP P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.9e-29
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS+SAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRSSR 77

[Close]

BLAST of CmoCh19G006850 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.0e-28
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS+ +WTA +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IESG++PFPY +S
Sbjct: 61 DVNHIESGQIPFPYRKS 76

[Close]

BLAST of CmoCh19G006850 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.4e-27
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMS+HGS G+WT  QNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LL++
Sbjct: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DVK IESG+VPFPY  S
Sbjct: 61 DVKFIESGQVPFPYRTS 76

[Close]

BLAST of CmoCh19G006850 vs. TrEMBL
Match: W9QGR5_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.7e-25
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 6  AHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQI 65
          A  S  +WTAKQNKAFEKALAVYD+DTP+RW NVAKA+GGKT EEVKRHY+LLL+DVK I
Sbjct: 2  ASSSMSTWTAKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLLEDVKHI 61

Query: 66 ESGEVPFPYGRS 78
          ESG+VPFPY R+
Sbjct: 62 ESGQVPFPYYRT 73

[Close]

BLAST of CmoCh19G006850 vs. TrEMBL
Match: A0A0D2RSV3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G244000 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.7e-25
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 2  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 61
          +SMS+ GS+ SWTAKQNK FEKALAVYD+DTP+RW NVAKA+GGKT EEVKRHY+LL+KD
Sbjct: 4  SSMSSQGSS-SWTAKQNKDFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVKD 63

Query: 62 VKQIESGEVPFPYGRS 78
          VKQIESG+VPFP  R+
Sbjct: 64 VKQIESGKVPFPNYRT 78

[Close]

BLAST of CmoCh19G006850 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-25
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1


Query: 2  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 61
          +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKQIESGEVPFPYGRS 78
          +  IE+G VPFP  R+
Sbjct: 64 INSIENGHVPFPNYRT 78

[Close]

BLAST of CmoCh19G006850 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-25
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1


Query: 3  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 62
          SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KQIESGEVPFP 74
          + IE+G VPFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CmoCh19G006850 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-21
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S   S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1  MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE+G VP P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S+  S+ SWT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +L++
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE   VP P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S   S  SWTA+++K FE ALA +D+DTP+RW  +A+A+GGK+ EEVKRHY+LLL+
Sbjct: 1  MASSSM--STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLR 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IESG  P P  R+
Sbjct: 61 DVNDIESGRYPQPRYRN 75

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRTSR 77

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-29
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS+SAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRSSR 77

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-28
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS+ +WTA +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGSS-AWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IESG++PFPY +S
Sbjct: 61 DVNHIESGQIPFPYRKS 76

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMS+HGS G+WT KQNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LL++
Sbjct: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DVK IESG+VPFPY  S
Sbjct: 61 DVKFIESGQVPFPYRTS 76

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: gi|659092353|ref|XP_008447026.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS   WTA +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLLL+
Sbjct: 1  MASMSAHGST-QWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IE+G++PFPY  S
Sbjct: 61 DVNHIENGQIPFPYRNS 76

The following BLAST results are available for this feature:

BLAST of CmoCh19G006850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	3.7e-24	69.74	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	1.1e-23	71.83	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RAD_ANTMA	2.6e-22	63.01	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL3_ARATH	2.9e-21	64.94	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL6_ARATH	1.6e-19	64.38	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of CmoCh19G006850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K344_CUCSA	5.9e-29	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K3K0_CUCSA	5.0e-28	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A0A0K348_CUCSA	9.4e-27	80.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
W9QGR5_9ROSA	6.7e-25	77.78	DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1	[more]
A0A0D2RSV3_GOSRA	6.7e-25	77.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G244000 PE=4 SV=1	[more]

BLAST of CmoCh19G006850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	2.1e-25	69.74	RAD-like 1	[more]
AT2G21650.1	6.0e-25	71.83	Homeodomain-like superfamily protein	[more]
AT1G75250.1	9.0e-21	64.38	RAD-like 6	[more]
AT1G19510.1	1.5e-20	63.01	RAD-like 5	[more]
AT2G18328.1	1.3e-19	58.44	RAD-like 4	[more]

BLAST of CmoCh19G006850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092351\|ref\|XP_008447025.1\|	1.3e-29	87.18	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	8.4e-29	84.62	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|778725452\|ref\|XP_011658943.1\|	7.1e-28	81.82	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092346\|ref\|XP_008447024.1\|	2.7e-27	81.82	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|659092353\|ref\|XP_008447026.1\|	1.0e-26	79.22	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006850.1	CmoCh19G006850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..58 score: 5.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 score: 3.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 12..65 score: 7.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..67 score: 8.97
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 5..59 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 13..72 score: 3.6
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 13..72 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G006850	Cla015915	Watermelon (97103) v1	cmowmB496
CmoCh19G006850	MELO3C012498	Melon (DHL92) v3.5.1	cmomeB453
CmoCh19G006850	ClCG02G004900	Watermelon (Charleston Gray)	cmowcgB459

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G006850	CmoCh01G019730	Cucurbita moschata (Rifu)	cmocmoB352

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G006850	Silver-seed gourd	carcmoB0246
CmoCh19G006850	Silver-seed gourd	carcmoB0433
CmoCh19G006850	Silver-seed gourd	carcmoB1202
CmoCh19G006850	Cucumber (Chinese Long) v3	cmocucB0590
CmoCh19G006850	Cucumber (Chinese Long) v3	cmocucB0622
CmoCh19G006850	Watermelon (97103) v2	cmowmbB507
CmoCh19G006850	Watermelon (97103) v2	cmowmbB512
CmoCh19G006850	Wax gourd	cmowgoB0641
CmoCh19G006850	Wax gourd	cmowgoB0666
CmoCh19G006850	Cucurbita moschata (Rifu)	cmocmoB111
CmoCh19G006850	Cucurbita moschata (Rifu)	cmocmoB382
CmoCh19G006850	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh19G006850	Cucumber (Gy14) v1	cgycmoB0251
CmoCh19G006850	Cucumber (Gy14) v1	cgycmoB1037
CmoCh19G006850	Cucurbita maxima (Rimu)	cmacmoB146
CmoCh19G006850	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G006850	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G006850	Cucurbita maxima (Rimu)	cmacmoB599
CmoCh19G006850	Wild cucumber (PI 183967)	cmocpiB500
CmoCh19G006850	Watermelon (Charleston Gray)	cmowcgB455
CmoCh19G006850	Watermelon (97103) v1	cmowmB498
CmoCh19G006850	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G006850	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G006850	Cucurbita pepo (Zucchini)	cmocpeB495
CmoCh19G006850	Cucurbita pepo (Zucchini)	cmocpeB499
CmoCh19G006850	Bottle gourd (USVL1VR-Ls)	cmolsiB454
CmoCh19G006850	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G006850	Cucumber (Gy14) v2	cgybcmoB202
CmoCh19G006850	Cucumber (Gy14) v2	cgybcmoB927
CmoCh19G006850	Melon (DHL92) v3.6.1	cmomedB522