CmoCh19G005370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G005370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr19 : 6252585 .. 6252854 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTCCAATTTGGTTAGTAGAACTTGCCCTAATCTTAGCTTCGATCTCTCCCACGGTTGCTAAAAGCTACACGAAAGACTTCGTCGATGCCCACAATGTCATCCGTGCCGAGTATGGCGTCGGGCCGGTGTCTTGGAACACCACTTTGGCTATCTATGCTCGAAATTTTGCCAAAACAAAGATAGGTAACTGCGAGTTGGAGTACTCTAATGGCCCTTATGGCGAAAACTTGGCAGAAGCATACATAATACAACAGCAAAATTGA

mRNA sequence

ATGGCATCTCCAATTTGGTTAGTAGAACTTGCCCTAATCTTAGCTTCGATCTCTCCCACGGTTGCTAAAAGCTACACGAAAGACTTCGTCGATGCCCACAATGTCATCCGTAACTGCGAGTTGGAGTACTCTAATGGCCCTTATGGCGAAAACTTGGCAGAAGCATACATAATACAACAGCAAAATTGA

Coding sequence (CDS)

ATGGCATCTCCAATTTGGTTAGTAGAACTTGCCCTAATCTTAGCTTCGATCTCTCCCACGGTTGCTAAAAGCTACACGAAAGACTTCGTCGATGCCCACAATGTCATCCGTAACTGCGAGTTGGAGTACTCTAATGGCCCTTATGGCGAAAACTTGGCAGAAGCATACATAATACAACAGCAAAATTGA

Homology

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BLAST of CmoCh19G005370 vs. TrEMBL
Match: A0A0A0K2C5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-06
Identity = 35/77 (45.45%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 7  LVELALILASISPTVAKSYTKDFVDAHNVIR---------------------------NC 57
          +V L LILA ISPT+A S  +DFVDAHN IR                            C
Sbjct: 13 VVGLFLILAPISPTLANSTPQDFVDAHNAIRAKYGVGPVTWNKTIASYAEKYAKTKTATC 72

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BLAST of CmoCh19G005370 vs. NCBI nr
Match: gi|659110141|ref|XP_008455070.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 3  SPIWLVELALILASISPTVAKSYTKDFVDAHNVIR------------------------- 57
          S   +V L+LILA ISPT+AKS  ++FVDAHN IR                         
Sbjct: 9  SAFCVVGLSLILAPISPTIAKSSPQEFVDAHNAIRAKYGVGPVTWNKTLASYAENYAKTR 68

[Close]

BLAST of CmoCh19G005370 vs. NCBI nr
Match: gi|449438606|ref|XP_004137079.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-06
Identity = 35/77 (45.45%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 7  LVELALILASISPTVAKSYTKDFVDAHNVIR---------------------------NC 57
          +V L LILA ISPT+A S  +DFVDAHN IR                            C
Sbjct: 13 VVGLFLILAPISPTLANSTPQDFVDAHNAIRAKYGVGPVTWNKTIASYAEKYAKTKTATC 72

The following BLAST results are available for this feature:

BLAST of CmoCh19G005370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G005370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C5_CUCSA	4.3e-06	45.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1	[more]

BLAST of CmoCh19G005370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G005370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110141\|ref\|XP_008455070.1\|	1.2e-06	44.44	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|449438606\|ref\|XP_004137079.1\|	6.1e-06	45.45	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G005370.1	CmoCh19G005370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G005370	Cp4.1LG15g04140	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G005370	Cla97C02G034100	Watermelon (97103) v2	cmowmbB512
CmoCh19G005370	Bhi05G000841	Wax gourd	cmowgoB0642

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G005370	Cucurbita pepo (Zucchini)	cmocpeB494
CmoCh19G005370	Bottle gourd (USVL1VR-Ls)	cmolsiB467
CmoCh19G005370	Bottle gourd (USVL1VR-Ls)	cmolsiB468
CmoCh19G005370	Cucumber (Gy14) v2	cgybcmoB928
CmoCh19G005370	Melon (DHL92) v3.6.1	cmomedB523
CmoCh19G005370	Melon (DHL92) v3.6.1	cmomedB550
CmoCh19G005370	Silver-seed gourd	carcmoB0615
CmoCh19G005370	Silver-seed gourd	carcmoB0998
CmoCh19G005370	Cucumber (Chinese Long) v3	cmocucB0623
CmoCh19G005370	Watermelon (97103) v2	cmowmbB505
CmoCh19G005370	Wax gourd	cmowgoB0635
CmoCh19G005370	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh19G005370	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh19G005370	Cucumber (Gy14) v1	cgycmoB0627
CmoCh19G005370	Cucurbita maxima (Rimu)	cmacmoB143
CmoCh19G005370	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G005370	Wild cucumber (PI 183967)	cmocpiB525
CmoCh19G005370	Cucumber (Chinese Long) v2	cmocuB519
CmoCh19G005370	Melon (DHL92) v3.5.1	cmomeB454
CmoCh19G005370	Melon (DHL92) v3.5.1	cmomeB475
CmoCh19G005370	Watermelon (Charleston Gray)	cmowcgB454
CmoCh19G005370	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G005370	Watermelon (97103) v1	cmowmB478
CmoCh19G005370	Watermelon (97103) v1	cmowmB496
CmoCh19G005370	Watermelon (97103) v1	cmowmB497