CmoCh19G005120 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G005120
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 6051166 .. 6051991 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCAAAAGTGGATTAGCTTAGCCCATAAACACACAAACGAGAACTCTCTAGATGCTCCACTTTTCCAACTGCTCCTTTCTTCTTCAATACAACTAGAATTTTTCCTTTTTATTGTCAAAAACACACGAGCAAATAGTGATAAAACAAAGAGAATCCCATAAACTCCATATCTTCTTCTTAAATACCTTCTTCTTCTCTTCATTTAAGCTCGTGTTGATCCGAAGATATGAGCGATCCCAAATATGCCTACCCGTACCCACCTCCTCCAGGTATTACTAGTTGTTATCTGTTGAGCTATGCTTAAATTGATTGCTTTCTGGGTCTCGTTTGATTTAGCGATTTGGATGATGTGATCTATTCACAGGAGGGTATTATCAAGGACCGCCCGTGATGGCGCCGCCGCAATACGCTGCACCGCCACCGAAAAGACAACCGGGGTTTTTGGAGGGATGGTACGTCAAAAAGGTTTGTTGTTTGTTGAATGGTTTAGGGTTAGAATTTGGCTAACAAAGGGTTTAACTTTGTGTGATGCAGCCTTGCAGCTCTGTGTTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTCACTTGATATGAGCTTTGCTTGCCTAATTTGTAGCTGTGAAATGGGTTATGTTCTTCTACCTTCTTTGGGAGTGGGTTTGAGTTTGTGTAAACTTTGGAAAGAATATTGTTGATTGGTGTCTAGAATAAAGCTTTGTTTTGATGTGAAGTGTAGAGTTTAATTACGAAAGTTGTGAAATTTGTCGATCGTTTTGACTTTTCGACTAAAAAATTTGAGGTTAAAC

mRNA sequence

TCTTCAAAAGTGGATTAGCTTAGCCCATAAACACACAAACGAGAACTCTCTAGATGCTCCACTTTTCCAACTGCTCCTTTCTTCTTCAATACAACTAGAATTTTTCCTTTTTATTGTCAAAAACACACGAGCAAATAGTGATAAAACAAAGAGAATCCCATAAACTCCATATCTTCTTCTTAAATACCTTCTTCTTCTCTTCATTTAAGCTCGTGTTGATCCGAAGATATGAGCGATCCCAAATATGCCTACCCGTACCCACCTCCTCCAGGAGGGTATTATCAAGGACCGCCCGTGATGGCGCCGCCGCAATACGCTGCACCGCCACCGAAAAGACAACCGGGGTTTTTGGAGGGATGCCTTGCAGCTCTGTGTTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTCACTTGATATGAGCTTTGCTTGCCTAATTTGTAGCTGTGAAATGGGTTATGTTCTTCTACCTTCTTTGGGAGTGGGTTTGAGTTTGTGTAAACTTTGGAAAGAATATTGTTGATTGGTGTCTAGAATAAAGCTTTGTTTTGATGTGAAGTGTAGAGTTTAATTACGAAAGTTGTGAAATTTGTCGATCGTTTTGACTTTTCGACTAAAAAATTTGAGGTTAAAC

Coding sequence (CDS)

ATGAGCGATCCCAAATATGCCTACCCGTACCCACCTCCTCCAGGAGGGTATTATCAAGGACCGCCCGTGATGGCGCCGCCGCAATACGCTGCACCGCCACCGAAAAGACAACCGGGGTTTTTGGAGGGATGCCTTGCAGCTCTGTGTTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTCACTTGA
Homology
[Close]
BLAST of CmoCh19G005120 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 40/75 (53.33%), Postives = 41/75 (54.67%), Query Frame = 1 

Query: 4  PKYAYP---YPP--------PPGGY------YQGPPVMAPPQYAAPPPKRQ----PGFLE 58
          PK AYP   YPP        PP GY       QG P    PQY  PP  +Q    PGFLE
Sbjct: 23 PKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLE 82

[Close]
BLAST of CmoCh19G005120 vs. TrEMBL
Match: B9SMJ5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.9e-26
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]
BLAST of CmoCh19G005120 vs. TrEMBL
Match: A0A061DHF5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-25
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPKR PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]
BLAST of CmoCh19G005120 vs. TrEMBL
Match: A0A0D2NVV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G036100 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-25
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ ++
Sbjct: 61 PSIIFIS 65

[Close]
BLAST of CmoCh19G005120 vs. TrEMBL
Match: D7T5D4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0415g00070 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-25
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          M+DPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MNDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]
BLAST of CmoCh19G005120 vs. TrEMBL
Match: V7CN31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.8e-25
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQY-AAPPPKRQPGFLEGCLAALCCCCLLDECCC 60
          MSDPKYAYPYPP   GYYQGPPVMAPPQY AAPPP+RQ GFLEGCLAALCCCCL+DECCC
Sbjct: 1  MSDPKYAYPYPPQGQGYYQGPPVMAPPQYYAAPPPRRQAGFLEGCLAALCCCCLIDECCC 60

Query: 61 DPSILLVT 68
          DPSI+ ++
Sbjct: 61 DPSIIFIS 68

[Close]
BLAST of CmoCh19G005120 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-19
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPP--VMAPPQY--------AAPPPKRQPGFLEGCLAALCC 60
          MSDPKYAYPYP P G Y QGPP  V  PPQY          PPP R+ GFLEG LAALCC
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCC 60

Query: 61 CCLLDECCCDPSIL 65
          CCL+DECCCDP+I+
Sbjct: 61 CCLVDECCCDPTII 73

[Close]
BLAST of CmoCh19G005120 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-09
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 4  PKYAYP---YPP---PPGGYYQGPPVMA--PPQYA-APPPKRQPGFLEGCLAALCCCCLL 58
          PK  YP   YPP   PP GY QG P     PPQY+ AP  K+  G LEGCLAALCCCCLL
Sbjct: 19 PKDGYPPAGYPPAGYPPPGYAQGYPAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLL 78

[Close]
BLAST of CmoCh19G005120 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08
Identity = 40/75 (53.33%), Postives = 41/75 (54.67%), Query Frame = 1 

Query: 4  PKYAYP---YPP--------PPGGY------YQGPPVMAPPQYAAPPPKRQ----PGFLE 58
          PK AYP   YPP        PP GY       QG P    PQY  PP  +Q    PGFLE
Sbjct: 23 PKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLE 82

[Close]
BLAST of CmoCh19G005120 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 30/60 (50.00%), Postives = 33/60 (55.00%), Query Frame = 1 

Query: 4   PKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQP------GFLEGCLAALCCCCLLDEC 58
           P   YP   PP   YQGPP   PP Y   PPK +       GF+EGCLA LCCC LL+ C
Sbjct: 67  PPPQYPQGHPPQYPYQGPP---PPHYGQAPPKNKKDKKDSGGFMEGCLAMLCCCVLLEAC 123

[Close]
BLAST of CmoCh19G005120 vs. NCBI nr
Match: gi|223533390|gb|EEF35140.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]
BLAST of CmoCh19G005120 vs. NCBI nr
Match: gi|719995883|ref|XP_010254642.1| (PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1   MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
           MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCLLDECCCD
Sbjct: 92  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLLDECCCD 151

Query: 61  PSILLVT 68
           PSI+ V+
Sbjct: 152 PSIIFVS 156

[Close]
BLAST of CmoCh19G005120 vs. NCBI nr
Match: gi|763750765|gb|KJB18153.1| (hypothetical protein B456_003G036100 [Gossypium raimondii])

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-25
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ ++
Sbjct: 61 PSIIFIS 65

[Close]
BLAST of CmoCh19G005120 vs. NCBI nr
Match: gi|590706350|ref|XP_007047698.1| (Uncharacterized protein TCM_000918 [Theobroma cacao])

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-25
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPKR PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]
BLAST of CmoCh19G005120 vs. NCBI nr
Match: gi|296084629|emb|CBI25717.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-25
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1 

Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          M+DPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MNDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

The following BLAST results are available for this feature:
BLAST of CmoCh19G005120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT1A_ARATH2.0e-0753.33Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali... [more]
BLAST of CmoCh19G005120 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SMJ5_RICCO8.9e-2686.57Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1[more]
A0A061DHF5_THECC2.6e-2586.57Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1[more]
A0A0D2NVV1_GOSRA2.6e-2583.58Uncharacterized protein OS=Gossypium raimondii GN=B456_003G036100 PE=4 SV=1[more]
D7T5D4_VITVI4.4e-2583.58Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0415g00070 PE=4 SV=... [more]
V7CN31_PHAVU5.8e-2583.82Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1[more]
BLAST of CmoCh19G005120 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33660.19.4e-1966.22 unknown protein[more]
AT5G67600.11.8e-0960.32 unknown protein[more]
AT2G41420.11.2e-0853.33 proline-rich family protein[more]
AT3G49845.15.4e-0650.00 unknown protein[more]
BLAST of CmoCh19G005120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223533390|gb|EEF35140.1|1.3e-2586.57conserved hypothetical protein [Ricinus communis][more]
gi|719995883|ref|XP_010254642.1|1.7e-2586.57PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera][more]
gi|763750765|gb|KJB18153.1|3.7e-2583.58hypothetical protein B456_003G036100 [Gossypium raimondii][more]
gi|590706350|ref|XP_007047698.1|3.7e-2586.57Uncharacterized protein TCM_000918 [Theobroma cacao][more]
gi|296084629|emb|CBI25717.3|6.3e-2583.58unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G005120.1CmoCh19G005120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 12..58
score: 5.0
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..60
score: 4.8
NoneNo IPR availablePANTHERPTHR31568:SF15SUBFAMILY NOT NAMEDcoord: 1..60
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G005120Carg22792Silver-seed gourdcarcmoB0397
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G005120Cucumber (Gy14) v2cgybcmoB928
CmoCh19G005120Cucumber (Gy14) v2cgybcmoB934
CmoCh19G005120Melon (DHL92) v3.6.1cmomedB517
CmoCh19G005120Melon (DHL92) v3.6.1cmomedB523
CmoCh19G005120Melon (DHL92) v3.6.1cmomedB550
CmoCh19G005120Silver-seed gourdcarcmoB0513
CmoCh19G005120Silver-seed gourdcarcmoB0998
CmoCh19G005120Cucumber (Chinese Long) v3cmocucB0612
CmoCh19G005120Cucumber (Chinese Long) v3cmocucB0623
CmoCh19G005120Cucumber (Chinese Long) v3cmocucB0629
CmoCh19G005120Watermelon (97103) v2cmowmbB505
CmoCh19G005120Watermelon (97103) v2cmowmbB531
CmoCh19G005120Watermelon (97103) v2cmowmbB537
CmoCh19G005120Wax gourdcmowgoB0635
CmoCh19G005120Wax gourdcmowgoB0642
CmoCh19G005120Cucurbita moschata (Rifu)cmocmoB110
CmoCh19G005120Cucurbita moschata (Rifu)cmocmoB395
CmoCh19G005120Cucumber (Gy14) v1cgycmoB0627
CmoCh19G005120Cucumber (Gy14) v1cgycmoB0629
CmoCh19G005120Cucumber (Gy14) v1cgycmoB0909
CmoCh19G005120Cucurbita maxima (Rimu)cmacmoB143
CmoCh19G005120Cucurbita maxima (Rimu)cmacmoB330
CmoCh19G005120Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G005120Wild cucumber (PI 183967)cmocpiB515
CmoCh19G005120Wild cucumber (PI 183967)cmocpiB525
CmoCh19G005120Wild cucumber (PI 183967)cmocpiB531
CmoCh19G005120Cucumber (Chinese Long) v2cmocuB519
CmoCh19G005120Cucumber (Chinese Long) v2cmocuB525
CmoCh19G005120Melon (DHL92) v3.5.1cmomeB448
CmoCh19G005120Melon (DHL92) v3.5.1cmomeB454
CmoCh19G005120Melon (DHL92) v3.5.1cmomeB475
CmoCh19G005120Watermelon (Charleston Gray)cmowcgB441
CmoCh19G005120Watermelon (Charleston Gray)cmowcgB448
CmoCh19G005120Watermelon (Charleston Gray)cmowcgB454
CmoCh19G005120Watermelon (97103) v1cmowmB466
CmoCh19G005120Watermelon (97103) v1cmowmB471
CmoCh19G005120Watermelon (97103) v1cmowmB478
CmoCh19G005120Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G005120Cucurbita pepo (Zucchini)cmocpeB488
CmoCh19G005120Cucurbita pepo (Zucchini)cmocpeB494
CmoCh19G005120Bottle gourd (USVL1VR-Ls)cmolsiB467
CmoCh19G005120Bottle gourd (USVL1VR-Ls)cmolsiB468