CmoCh19G004530 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Two-component response regulator-APRR2-like protein
Location	Cmo_Chr19 : 5502755 .. 5503629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACGGTTCCTTCAGAGGAAGAGACGAAAGCATGATTGAGGTAATCTCTTCTGTGTCTTCTTCATCAGAACAGTACTTTTGGCCTTTCAAATCGCCAGTGTTCGAACGTTTGTTTTGAAATGTGTTGTTTGATTGTGATTATGATTGCGATGAGTTTGATCGCTTTTGTTTCGGTTGGAATTATTTTGATATGATTTCTCTCTCTTTCTCTATGTTTTAGTTGTTCCGGAGGCGTTCCGATTGGGAAAATAAGTTTTTCGGAGTATTTAGTCTTCGAAACACTTCATTAACCGAAGTTCAGGATGCTTATGATAACTGTAGGTTCCATTTTAATCAGAGGAGTACTGTGTGTTCCATGTATTATCGTTTTCTCGAGTAATCTCTTGAGCTGTCGTATTAAATTTTCAGCGAGACATCTGTATACATTTATTTCTTTTTCCTCGAACATTTCGCTCTTGCACATTTGTGATTTGATTTGCTGTTTGTTGTTTTTTCTTTATAAATAAATATGTTGAAATTTTCATATCAAACGAGGATGAGTTGAAGATGTTTGAGTTTTTGCCAATGATCAGTGATCTAAGAAACATGCCAAGCGAGCTATGGTTTGCACTGTCGATGATTTACAAGAATGGAAAGACTTTCCCAAGGGTCTTAGGGTTCTTCTCCTTGACCGCGACAGTAGCTCCGCTTCCGAGATAAGATCAAAACTTGAGGAAATGGAGTATGTTGGTGAGATAGTTCAAACGCCTCATTTTGGTCTTTTTGTTAGAAATCCTCTTTCTGTTACAGCTCTGTTTGTTTCTATCTTCTTCAACATTCAAATATATTTGCTTTACTCGCGTCCTAAAGAGAGCATTTTAAGCTTCTTGATTAAT

mRNA sequence

GTACGGTTCCTTCAGAGGAAGAGACGAAAGCATGATTGAGTTGTTCCGGAGGCGTTCCGATTGGGAAAATAAGTTTTTCGGAGTATTTAGTCTTCGAAACACTTCATTAACCGAAGTTCAGGATGCTTATGATAACTGTAGGTTCCATTTTAATCAGAGGAGTACTAAACATGCCAAGCGAGCTATGGTTTGCACTGTCGATGATTTACAAGAATGGAAAGACTTTCCCAAGGGTCTTAGGGTTCTTCTCCTTGACCGCGACAGTAGCTCCGCTTCCGAGATAAGATCAAAACTTGAGGAAATGGAGTATGTTGGTGAGATAGTTCAAACGCCTCATTTTGGTCTTTTTGTTAGAAATCCTCTTTCTGTTACAGCTCTGTTTGTTTCTATCTTCTTCAACATTCAAATATATTTGCTTTACTCGCGTCCTAAAGAGAGCATTTTAAGCTTCTTGATTAAT

Coding sequence (CDS)

ATGATTGAGTTGTTCCGGAGGCGTTCCGATTGGGAAAATAAGTTTTTCGGAGTATTTAGTCTTCGAAACACTTCATTAACCGAAGTTCAGGATGCTTATGATAACTGTAGGTTCCATTTTAATCAGAGGAGTACTAAACATGCCAAGCGAGCTATGGTTTGCACTGTCGATGATTTACAAGAATGGAAAGACTTTCCCAAGGGTCTTAGGGTTCTTCTCCTTGACCGCGACAGTAGCTCCGCTTCCGAGATAAGATCAAAACTTGAGGAAATGGAGTATGTTGGTGAGATAGTTCAAACGCCTCATTTTGGTCTTTTTGTTAGAAATCCTCTTTCTGTTACAGCTCTGTTTGTTTCTATCTTCTTCAACATTCAAATATATTTGCTTTACTCGCGTCCTAAAGAGAGCATTTTAAGCTTCTTGATTAAT

Homology

[Close]

BLAST of CmoCh19G004530 vs. Swiss-Prot
Match: APRR2_ARATH (Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-07
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 52  MVCTVDDLQEWKDFPKGLRVLLL------DRDSSSASEIRSKLEEMEYVGEIV--QTPHF 111
           MV T +DL +W++FPKGL+VLLL      D D SSA+E RS+LE M+Y+      +T   
Sbjct: 1   MVITANDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEAL 60

Query: 112 GLFVRNPLSVTALFVSI 121
              V+NP S     V +
Sbjct: 61  SAVVKNPESFHIAIVEV 77

[Close]

BLAST of CmoCh19G004530 vs. TrEMBL
Match: A0A140CWK4_CUCSA (Two-component response regulator-like protein APRR2 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSFSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. TrEMBL
Match: A0A140CWL0_CUCSA (Two-component response regulator-like protein APRR2 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSFSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. TrEMBL
Match: A0A0A0LEG6_CUCSA (Two-component response regulator-like protein APRR2 OS=Cucumis sativus GN=Csa_3G904140 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSFSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. TrEMBL
Match: A0A0K9RR19_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039000 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 48 AKRAMVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          AKRAMVCT +DL EWKDFPKGLR+LLL+ D++SA+EI+SKLEEME++
Sbjct: 41 AKRAMVCTANDLLEWKDFPKGLRILLLEEDTNSAAEIKSKLEEMEFI 87

[Close]

BLAST of CmoCh19G004530 vs. TrEMBL
Match: M5WCS5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004161mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 52  MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYVGEIV--QTPHFGLFVRN 111
           MVCT +DLQEWKDFPKGL+VLLLD D+SSA+EI+SKLE M+Y+      +T     F  N
Sbjct: 1   MVCTANDLQEWKDFPKGLKVLLLDEDNSSAAEIKSKLEAMDYIVTTFCNETEALSAFSSN 60

Query: 112 PLSVTALFVSI 121
           PLS     V +
Sbjct: 61  PLSFQVAIVEV 71

[Close]

BLAST of CmoCh19G004530 vs. TAIR10
Match: AT4G18020.1 (AT4G18020.1 CheY-like two-component responsive regulator family protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 52  MVCTVDDLQEWKDFPKGLRVLLL------DRDSSSASEIRSKLEEMEYVGEIV--QTPHF 111
           MV T +DL +W++FPKGL+VLLL      D D SSA+E RS+LE M+Y+      +T   
Sbjct: 1   MVITANDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEAL 60

Query: 112 GLFVRNPLSVTALFVSI 121
              V+NP S     V +
Sbjct: 61  SAVVKNPESFHIAIVEV 77

[Close]

BLAST of CmoCh19G004530 vs. NCBI nr
Match: gi|659131940|ref|XP_008465933.1| (PREDICTED: two-component response regulator-like APRR2 isoform X3 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSCSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. NCBI nr
Match: gi|659131936|ref|XP_008465931.1| (PREDICTED: two-component response regulator-like APRR2 isoform X1 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSCSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. NCBI nr
Match: gi|659131938|ref|XP_008465932.1| (PREDICTED: two-component response regulator-like APRR2 isoform X2 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSCSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. NCBI nr
Match: gi|659131942|ref|XP_008465934.1| (PREDICTED: two-component response regulator-like APRR2 isoform X4 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSCSATEIRSKLEEMEYV 43

[Close]

BLAST of CmoCh19G004530 vs. NCBI nr
Match: gi|778688049|ref|XP_011652667.1| (PREDICTED: two-component response regulator-like APRR2 isoform X4 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 52 MVCTVDDLQEWKDFPKGLRVLLLDRDSSSASEIRSKLEEMEYV 95
          MVCT DDLQEWKDFPKGLRVLLLDRDS SA+EIRSKLEEMEYV
Sbjct: 1  MVCTADDLQEWKDFPKGLRVLLLDRDSFSATEIRSKLEEMEYV 43

The following BLAST results are available for this feature:

BLAST of CmoCh19G004530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APRR2_ARATH	2.0e-07	42.86	Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=...	[more]

BLAST of CmoCh19G004530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A140CWK4_CUCSA	1.3e-13	93.02	Two-component response regulator-like protein APRR2 OS=Cucumis sativus PE=2 SV=1	[more]
A0A140CWL0_CUCSA	1.3e-13	93.02	Two-component response regulator-like protein APRR2 OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0LEG6_CUCSA	1.3e-13	93.02	Two-component response regulator-like protein APRR2 OS=Cucumis sativus GN=Csa_3G...	[more]
A0A0K9RR19_SPIOL	2.4e-12	74.47	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039000 PE=4 SV=1	[more]
M5WCS5_PRUPE	2.4e-12	56.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004161mg PE=4 SV=1	[more]

BLAST of CmoCh19G004530 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18020.1	1.1e-08	42.86	CheY-like two-component responsive regulator family protein	[more]

BLAST of CmoCh19G004530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131940\|ref\|XP_008465933.1\|	1.4e-13	93.02	PREDICTED: two-component response regulator-like APRR2 isoform X3 [Cucumis melo]	[more]
gi\|659131936\|ref\|XP_008465931.1\|	1.4e-13	93.02	PREDICTED: two-component response regulator-like APRR2 isoform X1 [Cucumis melo]	[more]
gi\|659131938\|ref\|XP_008465932.1\|	1.4e-13	93.02	PREDICTED: two-component response regulator-like APRR2 isoform X2 [Cucumis melo]	[more]
gi\|659131942\|ref\|XP_008465934.1\|	1.4e-13	93.02	PREDICTED: two-component response regulator-like APRR2 isoform X4 [Cucumis melo]	[more]
gi\|778688049\|ref\|XP_011652667.1\|	1.8e-13	93.02	PREDICTED: two-component response regulator-like APRR2 isoform X4 [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004530.1	CmoCh19G004530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31312	FAMILY NOT NAMED	coord: 53..93 score: 3.0
None	No IPR available	PANTHER	PTHR31312:SF2	TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2	coord: 53..93 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G004530	Cp4.1LG15g03420	Cucurbita pepo (Zucchini)	cmocpeB481

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004530	Silver-seed gourd	carcmoB1054
CmoCh19G004530	Cucumber (Chinese Long) v3	cmocucB0589
CmoCh19G004530	Cucumber (Chinese Long) v3	cmocucB0605
CmoCh19G004530	Cucumber (Chinese Long) v3	cmocucB0609
CmoCh19G004530	Watermelon (97103) v2	cmowmbB534
CmoCh19G004530	Wax gourd	cmowgoB0647
CmoCh19G004530	Wax gourd	cmowgoB0669
CmoCh19G004530	Cucurbita moschata (Rifu)	cmocmoB385
CmoCh19G004530	Cucumber (Gy14) v1	cgycmoB0868
CmoCh19G004530	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004530	Cucurbita maxima (Rimu)	cmacmoB597
CmoCh19G004530	Wild cucumber (PI 183967)	cmocpiB511
CmoCh19G004530	Cucumber (Chinese Long) v2	cmocuB505
CmoCh19G004530	Melon (DHL92) v3.5.1	cmomeB458
CmoCh19G004530	Watermelon (Charleston Gray)	cmowcgB446
CmoCh19G004530	Watermelon (97103) v1	cmowmB469
CmoCh19G004530	Cucurbita pepo (Zucchini)	cmocpeB506
CmoCh19G004530	Bottle gourd (USVL1VR-Ls)	cmolsiB472
CmoCh19G004530	Cucumber (Gy14) v2	cgybcmoB354
CmoCh19G004530	Melon (DHL92) v3.6.1	cmomedB529
CmoCh19G004530	Melon (DHL92) v3.6.1	cmomedB548