CmoCh19G004450 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G004450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall subunit rib
LocationCmo_Chr19 : 5434972 .. 5435337 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGATCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGACCACGTGAAGACGCTACTCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACCCGTTAACCAAGCAATATATCTTCTTACAACTGGTGCTCGTGAAGCTGCCTTTAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCATCTAACAGTTACGCTATCAAGAAAAAGGACGAGGTTGAGAGAGTTGCGAAGGCAAATCGGTGA

mRNA sequence

ATGGACATAATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGATCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGACCACGTGAAGACGCTACTCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACCCGTTAACCAAGCAATATATCTTCTTACAACTGGTGCTCGTGAAGCTGCCTTTAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCATCTAACAGTTACGCTATCAAGAAAAAGGACGAGGTTGAGAGAGTTGCGAAGGCAAATCGGTGA

Coding sequence (CDS)

ATGGACATAATTCATCTTCTAACTGATCTCAACCCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGATCAATTCAAGTTATTGTTGATGCCGTTGTTAACAGTGGACCACGTGAAGACGCTACTCGAATCGGTTCAGCCGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACCCGTTAACCAAGCAATATATCTTCTTACAACTGGTGCTCGTGAAGCTGCCTTTAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCATCTAACAGTTACGCTATCAAGAAAAAGGACGAGGTTGAGAGAGTTGCGAAGGCAAATCGGTGA
Homology
[Close]
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.0e-46
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 47  MEIIHLLTDLNP-------------IQVIVDAVINSGPREDATRIGSAGVVRRQAVDISP 106

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR V+QAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 107 LRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 154

Query: 121 R 122
           R
Sbjct: 167 R 154

[Close]
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.3e-46
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLL+DLNP             IQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLSDLNP-------------IQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.3e-46
Identity = 103/121 (85.12%), Postives = 106/121 (87.60%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTD NP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 90  MEIIHLLTDQNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 149

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 150 LRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 197

Query: 121 R 122
           R
Sbjct: 210 R 197

[Close]
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 9.0e-46
Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLL+DLNP             IQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLSDLNP-------------IQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-40
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 1 

Query: 2   DIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPL 61
           +IIHLLT  NP             +QV+V+A++NSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 98  EIIHLLTGENP-------------LQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPL 157

Query: 62  RPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 121
           R VNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 158 RRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204

[Close]
BLAST of CmoCh19G004450 vs. TrEMBL
Match: A0A103YFZ7_CYNCS (Ribosomal protein S5/S7 OS=Cynara cardunculus var. scolymus GN=Ccrd_013215 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.3e-46
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTD NPIQ+IVDAV+NSG    +    +NSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 98  MEIIHLLTDANPIQIIVDAVINSGWSYFVG---INSGPREDATRIGSAGVVRRQAVDISP 157

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 158 LRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 215

Query: 121 R 122
           R
Sbjct: 218 R 215

[Close]
BLAST of CmoCh19G004450 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. TrEMBL
Match: B9T7U3_RICCO (40S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_0408940 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 102 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 161

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 162 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 209

Query: 121 R 122
           R
Sbjct: 222 R 209

[Close]
BLAST of CmoCh19G004450 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.3e-45
Identity = 104/121 (85.95%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             +QVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLTDLNP-------------VQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 184.9 bits (468), Expect = 3.0e-47
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLL+DLNP             IQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLSDLNP-------------IQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A)

HSP 1 Score: 184.1 bits (466), Expect = 5.1e-47
Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLL+DLNP             IQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLSDLNP-------------IQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. NCBI nr
Match: gi|976924441|gb|KVI08405.1| (Ribosomal protein S5/S7 [Cynara cardunculus var. scolymus])

HSP 1 Score: 191.4 bits (485), Expect = 9.0e-46
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTD NPIQ+IVDAV+NSG    +    +NSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 98  MEIIHLLTDANPIQIIVDAVINSGWSYFVG---INSGPREDATRIGSAGVVRRQAVDISP 157

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 158 LRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 215

Query: 121 R 122
           R
Sbjct: 218 R 215

[Close]
BLAST of CmoCh19G004450 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.8e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. NCBI nr
Match: gi|255587562|ref|XP_002534312.1| (PREDICTED: 40S ribosomal protein S5 [Ricinus communis])

HSP 1 Score: 188.7 bits (478), Expect = 5.8e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 102 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 161

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 162 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 209

Query: 121 R 122
           R
Sbjct: 222 R 209

[Close]
BLAST of CmoCh19G004450 vs. NCBI nr
Match: gi|778659522|ref|XP_004139502.2| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.8e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 100 MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 159

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 160 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 207

Query: 121 R 122
           R
Sbjct: 220 R 207

[Close]
BLAST of CmoCh19G004450 vs. NCBI nr
Match: gi|1009161399|ref|XP_015898876.1| (PREDICTED: 40S ribosomal protein S5 [Ziziphus jujuba])

HSP 1 Score: 188.7 bits (478), Expect = 5.8e-45
Identity = 105/121 (86.78%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 1   MDIIHLLTDLNPIQVIVDAVVNSGSIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 60
           M+IIHLLTDLNP             IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP
Sbjct: 99  MEIIHLLTDLNP-------------IQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISP 158

Query: 61  LRPVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKAN 120
           LR VNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAKAN
Sbjct: 159 LRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 206

Query: 121 R 122
           R
Sbjct: 219 R 206

The following BLAST results are available for this feature:
BLAST of CmoCh19G004450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS5_NICPL4.0e-4684.3040S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV... [more]
RS51_ARATH5.3e-4683.4740S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1[more]
RS5_CICAR5.3e-4685.1240S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1[more]
RS52_ARATH9.0e-4682.6440S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2[more]
RS5_HUMAN2.5e-4075.0040S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4[more]
BLAST of CmoCh19G004450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103YFZ7_CYNCS6.3e-4685.12Ribosomal protein S5/S7 OS=Cynara cardunculus var. scolymus GN=Ccrd_013215 PE=3 ... [more]
A0A0A0KSZ1_CUCSA4.1e-4586.78Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1[more]
A0A0A0LVI4_CUCSA4.1e-4586.7840S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1[more]
B9T7U3_RICCO4.1e-4586.7840S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_0408940 PE=3 SV=1[more]
A0A0A0K5K0_CUCSA5.3e-4585.95Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1[more]
BLAST of CmoCh19G004450 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37270.13.0e-4783.47 ribosomal protein 5B[more]
AT3G11940.15.1e-4782.64 ribosomal protein 5A[more]
BLAST of CmoCh19G004450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976924441|gb|KVI08405.1|9.0e-4685.12Ribosomal protein S5/S7 [Cynara cardunculus var. scolymus][more]
gi|449445316|ref|XP_004140419.1|5.8e-4586.78PREDICTED: 40S ribosomal protein S5 [Cucumis sativus][more]
gi|255587562|ref|XP_002534312.1|5.8e-4586.78PREDICTED: 40S ribosomal protein S5 [Ricinus communis][more]
gi|778659522|ref|XP_004139502.2|5.8e-4586.78PREDICTED: 40S ribosomal protein S5 [Cucumis sativus][more]
gi|1009161399|ref|XP_015898876.1|5.8e-4586.78PREDICTED: 40S ribosomal protein S5 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000235Ribosomal_S5/S7
IPR023798Ribosomal_S7_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G004450.1CmoCh19G004450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 1..121
score: 1.1
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..121
score: 6.9
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 26..121
score: 7.3
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 22..121
score: 7.2
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 25..121
score: 4.45
NoneNo IPR availableunknownCoilCoilcoord: 120..121
scor
NoneNo IPR availablePANTHERPTHR11205:SF2440S RIBOSOMAL PROTEIN S5-1-RELATEDcoord: 1..121
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G004450Cp4.1LG15g03390Cucurbita pepo (Zucchini)cmocpeB481
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G004450Bottle gourd (USVL1VR-Ls)cmolsiB472
CmoCh19G004450Cucumber (Gy14) v2cgybcmoB356
CmoCh19G004450Melon (DHL92) v3.6.1cmomedB530
CmoCh19G004450Cucumber (Chinese Long) v3cmocucB0607
CmoCh19G004450Cucumber (Gy14) v1cgycmoB0868
CmoCh19G004450Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G004450Cucumber (Chinese Long) v2cmocuB507
CmoCh19G004450Melon (DHL92) v3.5.1cmomeB459