CmoCh19G004430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein
Location	Cmo_Chr19 : 5406865 .. 5423488 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCTTCGTCTTCTCCTTGTTCTTCGTTGTCAGAGGCAGAGGACACTCTCTGTCCTTCTCGGACTCGATCTCGAACTCCATAGCCATCCCTTTCCTTCCACCAGATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTTGCTTTCTTCTTTTGACTAGATCCTCTATGTTTATTCTCTTCTCTCTATGTCAACAGTTTGTTATCTGCTTGCTTCTTCAATAATTACTTTGGTATGAAGCTGAGTTTCATATTCATCTGTCGAATTTGTATGGATTTGCTGCGTGGGTTAATTTATGAAGCACCGTAACTTATGGAGCTATTGTGTTTTGATCCAGCGAATTCTGTTGTTTCTTTAGGCACACATTGAGTTAGCTGGAAGTCATGGTTACTTGAAAGGTCTTTAGAACTCGCTGGGAATTTTGTTCTGGATTCCCCTTTCCTGTTGTACGAATATTGTCGATATCTGCAAAATTTCTGTTTGCTTGAGACTGTTGATAAATGGTAAACTAGGCATAGCTAAATATGATGGTCAAAAAAATTGGAAACAAACTATTTATTGCATACGACATTGAACAGACACAAAAGGTTCATTGGTCCTCATGTGCACCGAGCATGGACAATTCCCGTTCGATCAATTTTAGTAGGATAGGAGCTGTGGAGACTCTCTCATGTCCAAAGTGTTGCTGTTGGACGTGTATGCATTGATACACTTCAAACCCATGTCTACATGTGATTTGGAGCAGGTTTTTCATTTTTTTTTTTTTGTTAACTTGTCCAAATTTCAGACAATTTGGGACTCACAAGACGAATTGGTAGAGACATGTTGAGCACACTCTAGGCATGTGGGGGCATTTTGAGAAGAAAAAAAAGAAGAAGAAATTATGTTTAAGGTGCTGGTGAAAACCTAGGTTTAGGAAAACTGTGTGGGGGACAGGACTTGGGGAATAGGTTTGGGACATCATTGAAGCCCATGAGTTTATCCAATAAACTCCAAGCTTGGCAAACTAACGTAGTAAACATGTCACCTGAATCTAAACCCTCACTCAAAACACATCCCTATTTACCCCCTAAATGACGATGGCATCTAGAATCCAAGATTATATAATTACTTAAATACGCTGATGTTTTGGAAGGCTCAATTGGTTTTTTGGGATGATAGTTAACATAATAACCACCATAACACACACTTTGGATCATTTATCTACTGAAGAAAACTATGTTGATAGCTGGAGGACGACTTTCCATTGAAGAATATCCATAAAACTAATTGTTTGGGGGCAAGTCACATGAAAGGTGATGTCATGAAAGGACACTTTAAAGCTGTCAGATGGATATTCACTCGGAAGTGAATATTCTACATTTATTATATAGCACTCAGAAGCGATGATTTGAGTAGGTACCTAATGACGTCTCTTCTGTTCCTATGACCTGACACTAAGTCAAAAAAATGGAAATGGAAGAGGGCTGTGGAACAATGGATAAAAGTACTTGGATATCCTTATTTTGAAGTTGCTTTAGTGGTGAACTGTCCTTTCTGTCTCAAGGTTATGATGTAATTCTTAAAACAAGGAGTTGCATCACTTATTTGTCTTCTTAGTCTGGAGGTGCTGCTCCAATCGTTTGTATAACTGTGTGGATGTTGGTATCGTTGAAGATAATTTAACTACTGCCCTTCGTTACTGGCAAACTACTGCTTACATTTGGAAATTGATTAAAAATTAAATCTTCTTGTCATCAATAAATACCAAAGCAGCTAGTAATTGTCGTCTTAAGGATCTTGAAGCTGAAATTTTCCCAATTATAGTACTTGCTGTGTCAATAAAATCCAACATTTTGAGGTTTTTGTCATTCAGTCCCTGGCTTTTACTTCTGTTGTTATTGAAGTAAATTTATTTTGGCGGTTACTGATGATTGTCAATTTTAGTTAGTTGGATTATTCCTTAAAGCGTTTGGTGCTCACAATTCCTTCTCAGCAAAGATCAGTTTAAATATTGTGGTAGTTTTGGCATTTCTCTTTGATGACTTTGGAATCAGAAATTTCAATGTTTGTGACCATCAGTTTAGGATATTACTTTTCTACGAGTATGCTTTGAAATTAGTAGAAAGGCATATAAGTTTGCAGGACATTTACAGTCGTTATTAATTAAAAAGTTGAATGGTTGATTTAGTAGGTTAGGTACTTCTGCTATGTTTTCCAATTCCCAATATGAATTGGATATTACTCTCTATGCCTACTTTTTATTTAACCTTATTTGCTTATTGAATTCTTTGTAAAATCATGGTTTTTAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGGTAAGATCCTCTCTTGGCATCTTTATTTGAATTCCGTTAATGTGTGGAACTCCTGCTTTTACCATCCCACCACAGGTGGATTCTTTTGATTAAATTTACAACATAATGAAAATTTAGAATGACCACTTAGAATTAGACAACCGAACTTCTTTTTCTATCTCTCCCTCCAAAACACTTCACCTGGTAAGGTCCATTTTAATTCAGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTGTGAGTATTTTATTTGTGATATTGTAAGCATCTTTCTTTACCATTGTTGTTCTTGAGTTATTCTCAATTCTCTTTCTGGTTGTCCACCTCCTGTTTTTTGTTTCAATATGCTGTAGATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTGTTTATTTGTTTGTTTTTATTTTTAAAATAACGTTTTAATCAATTTTGTAAAAGTAGTTATACGTATATATTTTATTTTTTAATAAAAATTTAAAACCTTGTGCATTGGTTCTGTTTCATGTTACAACATGTGGGATGGTTCCATCCCAGTGTCCACAATATGTTATTGACTTACAAACCAATGCATTTAATCCTTGCATGCTGCTTGTTTTACTTGCCCACTGTCAGTCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGGTACAAGTGTTAAATGATTTTGTTTGCATGTTCTTCAGCAGCTTGCTAAAGTTATATTGAATTATCATGCTGCTTTCTTCTTTGGCAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCCTCAACAGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGGTATACTTATTTTCTGTAGCATACGGTATCTGAGCTTTTCTGGTGCAATCTTTTTTCTCCATTAACCTCTATCATTGTTGGGACAATGTATTATTTCCTTAAAGTCTGTTGTATGGGTTATCCAAAATCTCCACAAGGACGTGTTGCAAATCAGGCGGGGAACGCTGGTTCAAACACATGAGAACTTGTTCCAAATCACGTGGGGAACCCCTGTTTGAAATGGGTTGAAGTAAATGAACAGGAGAAACTTTTTCCCCTATCTGATTTTCAGGAACAAACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCTGGCTTTCATTCAAAATTTTCTACTCAAATACGGGGGAGAGGTTGAGCCACAACACTGCCAACAATATTTGAGTTGCTCATCTAAAGAGCAGACTATGACGATATTCTTCTAATGAGGTTTCTAGTAGGTCTTGTATATAAGTGTTGTAGATTAAGATATCATCATAGAACATTGATGCAAACTGTCGTAAGTAAGTCTCTAAGATATCCTTCATTAGAGATAGAAAAGGAGAGGGAGCATTGTGCCAACCAAAAGGCATAAACAAAAATAGTTAGACTTGAGATCAATCTTAAACACTATAGCACCAAATAACTCATCAAGCAATTCATCCACTTCGGGAATAGGGTTCTTATTTGGGATAGTCGTATGGCTAAGTTTGTATTGCAACATATCTCATCAAATCTCTGTTTGATAAGAACCATTTCTTGCTTGTTCTGCAAAAGATAAACCAACATCCTCCGTTATTTTCTCAATCTCTTTTCTTTGCCTGAACTACCATGGGGATTTTGATTCTACCCTCGATGATTCTTTCAAGTCATTTTTCAACCAATTCTGGAACTCCATCTCATAAAGCTAGAAATTTCTAAATCAAGATGAAGATGGTTCCTATATTAGGTTGCCAACTTCTAACATCCAAAAGGAATGGTTTATCGAAGACTTCGCCAACATATTCGGTTGTAAAAAGATTGAATGGTCAAATATGTTGTAATGCCCCATGCCCAGAATTCAGAATTCGAATTCAAATTCAAATTCGGCACCCGATGGCCCTAGCATTCCCTTGCATCACCAACAACATGGTCGCTCAACATAGAATTGCTCCAAGTAAAGCACACTGAACTATGAAGTTTCTATGATTGAGCCACTGAAAAGGAAGGTTCCCCTTGTTGGTATAGGTAGTAATTTTCATTTACTTTAAGACTTTCTTAGTCATTCTATTCTCAGGATTGCTCTCATTCGGATATGGTCTCAGTTCATTCATGTACCCCTCTTTTACTCGAGTGTCAAATGCCTTGGTTTGTCCCCGAACCACATTTTATTGGGAGAGGTATCGCTCTGATACCATTTGTAATGCCCCATGCCCAAGATTCAGATCAAGATTTGGAATCCGGATTCGACACTTGATGGCCCTAACATTTCTTTACCATCGTTTGTGACATGGTCACGTTACCTACTCCTCGTTTCTTAAGAGTGAAGGCTACCTTACAGACCAATATGAGTCCTTCTAGCATGCTTTGTCCTCTCACACATGCATCTTAGGAACATTCTTAGAAATTCACCCCACGTAAAATTGCTCCAAGTAAAGCACGTTTAACTATGGAGTTTCTATGATTGAGCCACTAAAAAGGAAGGTGTACCTTGATGGTATAGGTATAGGTAGTAACTTTCATTTCCTTTAAACCTTTCTTAATCATCCTATCTTCAGGGTCGCTCTTATTCGGATGTGGTCTTGGTTCATTCATGTACCCTTCTTTTACTCGAGAGTCACATATGTACCTAGGATTGCTCTTAAATGGGAATCATAAATCCTTCACCTTCTGGAAGACCATTATTGAAAAAATAGAAAGAAGATTATCAACATGGTCATCATGTTATACTTCATGTTATACTTCAAAACGCAGAAAATCACCTTAATACAAGCCACACTATTCAACCTTCCCACTTGCTACATATCTCTATTCAAATTGCCTAGAAAAGTGGGTACAAAAATAGAAAGATTATTCATAGATATATATAGAAAGATGACCTACGTCTTGTTTGATGGAATTCCATAAACCTCCCGATGAATAAAGGAGGCATTGGTCTATTTCCAATAAAGAGCACTAAGACATCATCACCAATTGTATTTGCCATAGGGTGGGTGCTGGGGGAAGCATAGTTGTAACGACCTGTTTTTCGATGCCTCGAATCATGGTCGCCACGTAGTCTCAAGAGTAAAAAGGGCGATAAAATCTTTCAAATTGAAATGCTGGAGACAAGGAAAAGTTTTAATTTAAAAATGCATTAAAACTAACATAAGGTCAATTAAAAGTACAAAACAACGTCCGTGGAGTTAGTCCAAAATAGTTTACATAAAATACACCAAAAACAACATTTAAAGATAATAAAATGACAAGAAAGGAAGACGACTCGATCTAAAGGCACCCTTGTAGCTGCACCCCTTTGCACTCTTTTCCCCTCGACCGTGATCTCCACTCCTAAAAAAATAGAATAACATGGGATGAGTATAAAATACTCAGTAAGCAGCCAACTTTTAGGCTCTCATTAGACTTAGTACTTACAATAATTCCTTAAGTATGTGCTCACATGTTGACTCTAGTGTTAACCATTACCATGGTTACCATCTATGCTAACCTTATAGGCTTATATGTACCGAGGCCCTATACACTCCTACACTAGGGTGCATAACTAAGCCCCTCGGGTCATGATGTAGGGTTAGGTTGTACTCAACTTGTTGTTTATATCTCCCAAAGTCTACCCTTAACCTTGTGCTACTAGCACATGAGTCAACTTGCCGTATGGCGAGTTCGTGGGTAAGTCTCGTGTGTATGAGGTAATTTGTGCAATATATGCAGGCTAGTACTATAATCGCCTGCACCTCATACGAGCTATCTAAAAGGTGCACCCTGGTAGCATGCTCTCTACAGCTCCTGGCGTCCACTGTAGGTGACAACTAACCAATAGGTACCAAGTAGACCCTAACCATACTATGAAAGTTCACAATTATTGGTTGTGCCCCAATTGTCCCTACTTGATTGTCTGGTCACCCAAGAATGCCAATGGGACCCAATGTGGGTTCTAAGACTAAAGGATGTGCACTAACCGTTCATAATCATGCATATTTATACCTATGCTCACTAGGACACATAACATATATCCAATAAAATATTCGGGCATACAAGGGTATGTAAAGGTTCCTAGGCTTAACTGTAGACAACCTAATTAATTAGGTTTGTCGTCATGTTTTCTAATAAATATACATCTAGCTGAAATAGTCTCATTGTCATACTACCAAATAAGTATCTAACTTGATTAACTAGGTCTATCATCATGATTCCAATTGAGCATCCAACTTGATTAACTAAATTTATTAACATGCTTCCTAATGAATTTTGCCCATTGTCCTAATCGTCCCCTACAAGTATTACTTGAATAATCCATGTGGCTACTTACATATTTGTTGTCTTCCCGAGCTTGTTTCAGGTCTTCAAGAGTTTCCAAATTTCTAAAAAGTCCTCAATTAGGTCCATCGGGTCGGGGTCCAGATGGCGGGTTGGAGTCAACTAGGTGGGTCTGGTTAAGTCCTTTAAATCGAGTCAGGTTGGTTTCGGGGGTCTCGGGCGATTGGATCACTAGGTGAGGCGGTTACTCGAGTTGGATCAAGTGGGTTGGGTCACTATACAGTTGGGTCACTCAGGTCGGTTTAGCCCAGCGGGTCAACTTCTTTCTTCTTCCTCCCCATAACTATCTTTCTCTGTTCTATGCGATTTGCAGAGGCAGCGTTCCTTCCTTCCTTTGCTTCAGCTCTCGCCCATCCATCTTCATCTACGAGCAACGGGTCGTCCACGTGATCTGTATAACTTCGAGTTTCTCCTCTCTATGCACCAGGGTTGTAGAGATGGACCTTTAAGTCGCAAGCTCTTTTGTTGGAATCTCTCTCGTGGTGTTGCCTAGACTCCATACTTCCCTCATACTCCCTCTCTCTTGATTTAAACACAATGGCACCCCAAATCTGCTGAAATCAAGAAGGAAATAGGGTAGGTGGCTGACTTGTCTCCTTTGTCCGCTCTCTGCCCCCTCTGTGCATCCTTTTCACTTTGGAGGTCGCTGACCATAGTGTACGACCAGCGGCTCCATATCGTCCTTTCTTTTTTCCATTATATCTATATACAGTTGTCATCGCTTCCCATCTTCATTTATTTCAGTTTTGTACTGACCCTTGGATTGAAAACACTAGGCTAGCCTTGCAATATCCACTTATGTATAGACTCTCTCATGACAAAATGATCACGATCAAAGAAACATGGAAAGATGCCAACAAATTTTGGGACTTGAAGTTTGGGAGGAACTTAAAGATAATGAAGCTGTGGAATGGGCAGAGTTAAGCCTTGACCTAGCCCCAATTGTGTTGTCTAAAAAAGCAGAGTTGAGCCTTTTTTGTATTGTCTGAAAAAGCAGACTTATTAAAATGGCTTCCTAGCGCTGAAGTGGTCTTCTCTTTGGAATCTTTGATGAAGGACATAGGGGAAAAGGCAAAAGCAATCAACCCCACACTAGCAAAGACAATATGGAAAGGAAATCACCCTAAAAAGGTGAAGATTTTCTTATGGAAAATAGCAAGTGAAAACCTACCAAAAAAATAATAATAATAATAATAAAAAATAAAATAAAATAAAATAAAATAATAATACTGTCCTACATGACTCTGTTCCCAAGTTGGTGCCTATTAGGTTAGAAAGACAATGAATCACAAAGCCATATATTTATGCTGCACATACCCATAATTTTTGGTCAAGGATTCGCAATTTCTTTGGATGGTATCTCACTTTTCCCTACATAGGGTAAAGGAGTTATTGGACATGGCCTTAGCATATCATCCCCTCCAAGAATGCTAACTTTTACGAAGAGTATTCATGGAGGAGGCAAACTTTTACGAAGTTTTTCAGCAACATTGTGTACCTTGCTATTTGTTGGTGTAAATTGTCAAATACTTTTGCTTCCTATAGTCACACCTCCCTCATTTGGTCTTTTGTATCCATCATGGATAGCACATCCCTTTTGTAAATTTCAAACATCGGATTAAAAAAAAAAAAAACTAGTTATGTAACCCTTAGTTCTTTGAAATTGATGGAGTTGGTCTCTCTCATATTTGATCAAGTAAAATATGAGAGATCGATTTAGTATACAATCTGCATATATTTTCATTGCCTAATCCCACAATGTTTTGATCTTCGTTTGGTTTTTGTCGCATCCCCCTGATTTTCATAGATGCTGGCAGTAAAATATATTTTCTGATGTTTGTAGATTAGCCTGTTTTATAGAATAACCGATGGGAAATTTTACTGTATAATCGATACCTTATAAAATGTCCTATATCAATGGCCTTGTGAATAGCGATTAGTCATGGTACATTTGAGTAATATAACTTTTTTAGCCTTAAATAGGCTACTCAAACTACTGCTGAATATCAACGTCCATGATATTTTAAATTAACTACAATCTTTCTTATTCTTTATTCAAGGGAATAACATAATTCTCAACATTTTATGTTTCAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTAAGTGCTTTCAATTCCATTACGTATGAAAGTTTTTTCATTCTTGTAAAGGAGATTCAATGTAAAAGAAGTTGCATAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGGTACTTAAACTAAGACTATACTTATTCCATGTATTTGATTTGGTTTCTGCTACATAGCTTAATATACTGTGTATCTTAATATACTGTGTACTGTATTTCCTGTGTTTTATTGTGTGTTGCACGGGTTTTTTATATTCTCTTATTTGAACTTAAAAGACAGAACGGTGAGTTGCCTTCTTTACATGTTTAAGCATTTTTTATTTTATTTTATGTATACAAAACTTTATACTAGTTCCAAACCCTAAATTTGAAGCTTTGTTCTTGATTTATTTTCTTTCTTTGTTTTGTTTGTGCGTGTGTTTTAATTAAAAATTCATTGTTGTTCACAGTCAAAATCTGCTCTATCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCTGCATGAACAAGTACAAGTGAACTCCCTCTAAGCTTCTTTAGATTCCTGGAAGCTTTAAATTAATGCACTCTCTCTTTAATTTTTCTTAAATTATTTTTAGTGGAAGGAGTGAAGAGAAGAATTGGATATTACTATGAAATCATGGATAGTTACGAATGAGAAAAGGGTTAATATATATGTCATCAGAGACAGAAAGGAAATAAAGGATGGAAAAATCATAAAAGATAAATTGTTCAGAGGGTGCGGAAGGTGTGTTGAGGGAAACAATAGATAATTTTTAAAAGATAAATTGTTCAAACTGAATGGAGTTGGCCCTAAGGGGGCGGTCAGGTTAAGTTGGGAAGCTTGAGGATTACAAAAAGGACTTCCAACTGTGGATGTAAAAATTCATTGTTGAGATTTGATGGCTTGCAAAGAAGAAAAATAAATGTGGATGATCATGCAAAGAGGTCAAATGCCAGCTAAAAGTCTCTATTTATGGCTCGAGAGTTAAACTACTGCTATTAAATTCTCTAACCTCATTGGCCTTTTTATTTTTATTTTTTTTTTAATAAGAAACTGAGACATTGAGAGAGAAATGAAAGAATGTACAAGGGCATGCATAGAATAAAAGCCACACAAAAAAAGAGTCCAAAAGACTGCTGTAGAAGATTCTAATCTAAAAGAATGAAGTCTAACTTATAATTAAAAAAAACCCTTTGCCACTAGAGCTCATAAAGAGGCCGAACCTCCCACAGTTCCCCCTAAGATCTCTACCCACCTCTAAAATGTCTATCATTTATTTGAAGTTGAATCCCCCAAAGGACTGAGAAAAGGCACAATCCTAGGAATACTGTCCTTGACCCATAAAGAAGTTTGAGGTGGCTGCAGCACAGGAATAGAACCAATGTTTGAAAAGAATTTTTGAGGCTTACGCCTTGAGCATTGCTTTGGGAGAGAGGTTCAAGTGTCTAGCCTTGAAACTTGCACCGATACATGGATCTCTTGTTGGTCTATTGAAGAATAAAAGAATCAAGATCATAAACTTAGAAGTTAGAAAGGTATTTCAAAACATTGATTGAAAGGGAAGGGATAAAATCCAATCATTTTGGTTCAATCTTGTTGGAAATGTTCCAAGAAAGGCTGATGAATTTTGGGTGAGTTAGATATCTGATTGAAGTGTGAGGACATTATATCCATGTAACCCACCTTCCGTTTATAGATGATGCCATCGTAGTCTACTCATCCTTTGTAGATTTTTAGAGCTTAACTGACAATCACCTTTAGCTCTGAATCTATTCAAGATTTCTCTGGACTTTGCATAAGTTTGGAGAGATCTACCATTTAGTGTATAATCTTGGCACTAGATTATACTTTTGTGGTGGTAGAAATGTTTGAGTAGTATGGCTTTGAAACTGAAGAGTTCTGGTCGAAGGGGGGTGGATGTGCCTGCGGAATGGGTACTCTCTTGCTTGTATACGTTGTGTCAATATGAAGGAAAATTTAGCGAGTTGGTTAATTGAGAAATTTGTTCCTTAACAATTGGTAGTGGAGGTGTGATTGGGAACTTGAAAGGGCGAATGGAGACTTGGCCAACCAAATCTTTGGGACGTTCTTTATTCAAACAGTTCAACAAAGTAGTTGCAACCAAATTGGAGTGTTTTCTATTAACTCCTGGTAGGAGGTTATAGTTCTATAATAATTGCCAGAGTAGTTTGTATTACTCTCCTATCTTGTTATTCATCATAGAAGTACATACGCCTATTTGTAATAAGAAAAGCTAACTAATTCTCTAGGGAATAGGAAACCATAAAGAAAAGGAAACAAAAAAGGAAAGTTAACTTATCTTATGGGGAATAGAAAAGGGACCGCCACCCCCTTAGCATGTTGCCACCAGAAGCAGAACCCCCTATTTCTTCTGAGAAATGTACTTTCAAAGGGAGGGAAGCTAGGTTTCCCATGTTGGTATGGCCGGGCATAAAAGATCGTTAAGTTAGGTAAAAAATCAGAGGTAAAGAGAGAACAGAATGGAACCGATAGCCCCGAATTATGCCGGAAAAGGCAAGAGAAAGAAAAGTCAGGACTCTCTCAGCATACCTCTCGTTTGGGCAAAAAAAAAAAAAGCTGTGAAATATTAGATAAAAGGAAATAGAAAATAGGGTAATTCTCATATTAAATGGGATTACACCCATATTCCTCAAATTAAGATTATTTCTTTGACTTGTATGAAACAATCAGTTGTGAAGTTCTTTTGTTAACACATCTTCCAGATGAAGCCATGAGGGCAAATAACTCATGCATACAATCCCCTTTTAACTTTTCCTTAACAGAATGTCGATCGATTTCAATATGTTTTGTCCTATTATGTTGGGTAGGATTATGAGTAATATTGATGGCTGATTTGTTATCATGGTACAACTTTATCGAACTTTCTCCCTTAATCTGTAAGTCGTCAAGAATGGGGCGGACAATCCCCATTTAAACACAGAATGGGGAGGGAGCAGGAAGAGATTTTTCCCAGTTAGGGATAATATTCCCCACCCTTGTCCCACCTCTCTTTTTTTATAATAAATATAAATATATTTATATATATATCAAAACTAAGGCACAAAATTAACCTATTATATATGTATATTGTATGGGTATATATATATATATATAGTTGTTTCTTTATTTCTTTATTTCTCTACCTAGTAAATAAAAAATAAATAAGTATAAGTTTTTTAAATTTAGAAATTTGGTTTTTTAGAAATTATGTTGAATATTATATTATATTTTTGCTTATAAAGATTTATTAGGATGTTTTACAATTTTTGATAGAAATTATATTAAAAAATGGAAATTATAAAAAGTTCTTGAAAAAATATAAAAATGGGGAAAAAATTCTTAGGGGAATCTAATCCCCACAAGTAATCCTTATCTCTATCCCTATGAAAATAAATGAAGAATTTTGTGATGATAGAGATTGTTGAAATAGGAGGTGGGATAGGGATGGGGATGACTTCACTGTCCCCACCCTATCCTGTGGGCATGGTCAAAACAACCTTAAACACTGGATCAGAGCTTACTGCCTGATTTCAGCACTTATAGAGATCTATTGAGGCACTATAAGGCTTATCAAACATAACTATGTAAATTGGAGCTTATCAAGCCACTATTATTGGAACATATCTACTTAATACAATGCTAATCGAGAACTCTTAAGTCTCACTGATACTTGTGCTCACTTCTCTTGGAGGAACACTTCTATGGATCAAACAATCCACTCTTTTGAGTTGCTTCTTTCTCGAGATTACTTCTACGGGCAAGCAACCAATTCTCTTGAGCTAATTTCCAATCGTTATGGCTTTCTCTTGGTTATGATTGTCCACTCTCAAGACTACTTTTTATTTTTTTCAACTGTTTCTTAATTCAACCACATTGTCCCTCTCATGCTCACTTCTAAGGTAAATCATCCTATTCTCTTGAGCTACTTCCCTCTCTTTATGGTTTTCTCTTAGCTATGAATGTCAAGAGTACCGTCACTTTTTCACTTTTTCTCTTAGCCATGAATGTCAAGAGCACTTCAAGAGAAGACCTCTCTTAACTACAAAAGCTAGTGCATCTACACTGGATAGTTTGTCAAGCATAAGACTTCATCTGCTCTCTTCTACTAGAATAAGAGAGATTGTTTCTTCAAGGGACGGTGTTTCTTATTTTCTGATGATCTATACTCAGACTTGGTCAAACTTGTTGAATCCTACCGAAAAGTCATAGTCATGGTTTACTCCTATGAGTTTCTTTAGAATCATGGCATCTGCAGTGCACTTCATTTTGAATACTCGATAATAATCGAGTTCTGTCACAATGTTTGTTAGGCATTAGGATATTCTACGACAGTTTTCCCTTGTTGCATGGCTTTAGTTATGATCTTGATCTCATAGATTTGAGTTACATCTTGAGCTTTTGAGTAAGTGCGATGAATGAAGGCACATATGGCTTGTGCACTCGAAAAAAAAAAAAAAGATGTATCGCTAATGGATGGCTCCATAGAGTCTTAGAGCCATGACATTATCATGGAGTCTTCCTCGTCTATGTAGGAAATTTTTTACTGTCGTTGGTATCAAACCTTTTCCTTTCCTTTAAGGTATGTCTGCACGGTTTAAGGAAGTTTTTTTTCATTGAGTTGGTATGACAGTTAGATGTGTTGTAGGTCACCTGTCCTTTGGACGGTAGGAACCTCCTCTATCGATGATGTGACTTTTGATTCTTTTGACATGATGGTGGAATAAATTGGAAGGTGGGTCTTGGTCATAATAAATGATCGGGGCAGCTATGAAGGCATCACCAGTTAAGGTAGACTTTATGTTTAATTGGCTTGAAGGTGCATTACTCTTCTTTCTTGTTATGGATCAGAGAAGTACATAGGCCTATTTATATAATAAAGAAAAACTAACTCGTCCTCTGGAAAATATGAAGCAGTTCAAAAAAGGAAATGAACAAGGAAAGCTAACTAATCCTCTAGGAAATGGAAAACATTACAAAATGGAAATAAAAAATAGACTAATTCCTTCATTAAATGATATTACACCAATAGTCCTCAAATTAATGTTATACCTTCCACCGATATAATTTTCTACATTAAAAGTGTTGTGCATGATTTCCCGAAGGAAGGTTGAACCTTCCAATTTGGTTTAAGTATCTAGGAGACAGGTAGGTGAGCCTAATTAGTGAATTAGTTATATGGAAAAGAAAAGGAAAACTGATGCATGTCCAAGCTGGTACGGGCCGGGGCAAGAGAACTTAGGTGAGTTATAGGAATTGAGAGGATAAAAGGATACTTGATTCGATAATAAGAAAGTTGGGGAAAAGAAGACTCTGAAGGAAGAGCTTGAGGTGGACTGGGACCGATGAGAATAGAGTTCTAGATGTGAACTGCTGTTTTCGGCTGAGCAAAATCACTTATCTGAGTCGAGTAGTCTTGTTGTCGTATGAGTCGTATGTCTTACAATAGGCTTGCTTACTGTTGCACCATGGGTGAATACTTGACGCATATCACAAGGTTGTGTTTTTTACTTTTTTTGAAACCTCCCAGAAAATTGCAGCTGTTACTTCTCTACTAATAGCGAAAACTTTTAATTGCTCACTGGCGTAAACATAATTTGATCTAGAAAATCGTGTGCACTATTAATCAAAGAAGTTAACTGAAGTCTTTAGCCTGATGGGTGCAGCAAATGGAAATAAGTTCAATTTTCTAATGTCGTTACTCAAATTTTATGATGTCGTACTGTTCGAGTAGTACGAGGAAAAATGGTAGTAGATTGAGGCAGATACTTGTGGGAAAATAAAGAAAAAGGCAACCTTTTTGTATTTGTTAGTTATGTAGGTTGTACAACTACAACTATGTCCTTGAGTTGTAAAAATAGTGTTGAAGAAAAAGAAACAGTGATCTGAACATGAGGCATATTATATTTGTTCTATCTTGGAAAATGTATTTCTTTCTTTTTACTACTATGTCTGTTGCAGCGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTTCGTAATAGGGTACGGGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAACAACCATGGGAACCATGTGGGAACTCCACCTTTGAGTAGTTCTACCACCACCATGGAGCTGGCAGGCACAATGAAGCAGCAGCAGCAGCAGCAGCCTCCGGGGCCGAGAATGCCAGACGGGACGAGAGGATTCGCGATGGGGCGGGGGAAGGCGGTGAGTGTGAGTGTGAATATGGTATGAAAACCAAAGTACTTGAAGGGAATGAAGGGAATGTATGGGTAAAAGAAACGAGTATGGTGAGGATGGAAGGTGTTGAATGAATAGAATGGTGTTTTGATGGCGGGGTTTTTAGTAGGGCTGTCAAAAACCATTGGTAAAATTACAGTGAAAGAGTTAAGAGTTGTAGTTTTTAATGTATTTGGAAGAGAAGGTCGGTGTGGACCCGCTCCCCCGCTTTCTAATCTCCTCCTCTTTTCCCTTGCTTAG

mRNA sequence

TTTCTTCTTCGTCTTCTCCTTGTTCTTCGTTGTCAGAGGCAGAGGACACTCTCTGTCCTTCTCGGACTCGATCTCGAACTCCATAGCCATCCCTTTCCTTCCACCAGATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCCTCAACAGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGTCAAAATCTGCTCTATCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCTGCATGAACAACGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTTCGTAATAGGGTACGGGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAACAACCATGGGAACCATGTGGGAACTCCACCTTTGAGTAGTTCTACCACCACCATGGAGCTGGCAGGCACAATGAAGCAGCAGCAGCAGCAGCAGCCTCCGGGGCCGAGAATGCCAGACGGGACGAGAGGATTCGCGATGGGGCGGGGGAAGGCGGTGAGTGTGAGTGTGAATATGAATGGTGTTTTGATGGCGGGGTTTTTAGTAGGGCTGTCAAAAACCATTGGTAAAATTACAGTGAAAGAGTTAAGAGTTGTAGTTTTTAATGTATTTGGAAGAGAAGGTCGGTGTGGACCCGCTCCCCCGCTTTCTAATCTCCTCCTCTTTTCCCTTGCTTAG

Coding sequence (CDS)

ATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCCTCAACAGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGTCAAAATCTGCTCTATCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCTGCATGAACAACGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTTCGTAATAGGGTACGGGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAACAACCATGGGAACCATGTGGGAACTCCACCTTTGAGTAGTTCTACCACCACCATGGAGCTGGCAGGCACAATGAAGCAGCAGCAGCAGCAGCAGCCTCCGGGGCCGAGAATGCCAGACGGGACGAGAGGATTCGCGATGGGGCGGGGGAAGGCGGTGAGTGTGAGTGTGAATATGAATGGTGTTTTGATGGCGGGGTTTTTAGTAGGGCTGTCAAAAACCATTGGTAAAATTACAGTGAAAGAGTTAAGAGTTGTAGTTTTTAATGTATTTGGAAGAGAAGGTCGGTGTGGACCCGCTCCCCCGCTTTCTAATCTCCTCCTCTTTTCCCTTGCTTAG

Homology

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BLAST of CmoCh19G004430 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 429.1 bits (1102), Expect = 7.4e-119
Identity = 291/546 (53.30%), Postives = 357/546 (65.38%), Query Frame = 1


Query: 4   HSSSSSLSPSQS-DPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 63
           HS+SS+ S S S DPSL R+ SLSRLNA APEFVP R +                 PP  
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT-----------------PPLP 83

Query: 64  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHH-YHRHHRHH 123
           Q PR++IP  PPPP  M+H+Y   PP   F+ P+  PVP+  H+V +QNHH +HR H+HH
Sbjct: 84  QPPRMIIP--PPPPHGMLHMYHHQPP---FNTPVLGPVPIQPHLVPVQNHHPHHRFHQHH 143

Query: 124 HHSHHVPVLYHP-HNPQYYADNGGF---HDPDTVVQQA-------------QKPQVETDY 183
           HH+ H    Y P  N   Y   GG     +PD V ++              Q  +     
Sbjct: 144 HHNRHQNQQYVPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASV 203

Query: 184 AAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKA 243
           +  S++ L ED   K++NQVEYYFSDLNL TTDHLMRFI KDP+GYVPI VVASFKKIKA
Sbjct: 204 SIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKA 263

Query: 244 LINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNL 303
           +IN++SQLA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+QNL
Sbjct: 264 VINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNL 323

Query: 304 MKIFSAVGSVKNIRTCQPQISDSGASSTAKS-AKADGMHYSSKLHAFVEYESVELAEKAV 363
           MKIFS VGSVKNIRTCQPQ + SGA   A+S AK+DG  +S+K+HAFVEYE VELAE+AV
Sbjct: 324 MKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAV 383

Query: 364 AELNDEGNWRNALRLRLMLSCPS---KSALSRGKKGHSGEMNCKDDE--TSEQPRIEKHV 423
            EL++ GNWR+ L++RLML   +   K    RG+KGH  ++  ++D+  TSEQ  IEK  
Sbjct: 384 TELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQS 443

Query: 424 DDLSDQVDIHLHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNN 483
           DD S + D H+ EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H        H+HN 
Sbjct: 444 DDCSGEWDTHMQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQ 503

Query: 484 NH-----GNH-------VGTPPLSSSTTTMELAGTMKQQQQQQPPGPRMPDGTRGFAMGR 503
           NH     GNH       VGT P ++    ME  G  K    QQPPGPRMPDGTRGF+MGR
Sbjct: 504 NHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGK----QQPPGPRMPDGTRGFSMGR 542

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BLAST of CmoCh19G004430 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-56
Identity = 154/372 (41.40%), Postives = 219/372 (58.87%), Query Frame = 1


Query: 146 HDPDT---VVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRF 205
           HDP     +   A +     + ++ S++ L++D+ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 206 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 265
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 266 EELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMH 325
           EELQ R V+AENLP+DH +QNL KIF  VG+VK IR C P  S+S         K D + 
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRP------KGDFL- 290

Query: 326 YSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPSKSALSRGKKGHSGEMN 385
            S+K+HA +EY++  +A+KAV +LNDE NWR  LR+RL+L C  KS L + ++   G + 
Sbjct: 291 MSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL-KNRRNFDGILI 350

Query: 386 CKDDETSEQPRIEKHVDDLSDQVDIHLHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQ 445
             DDE       E       D   +HL E Q +  G++ + GG   +  + RGKGRGRS 
Sbjct: 351 --DDELPSYESGE-------DSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSP 410

Query: 446 YHH-------NHNNNHGNHVGTPPLSSSTTTMELAGTMKQQQQQQPPGPRMPDGTRGFAM 505
             +       +     G  +G P L S  ++     T          GPRMPDGTRGF M
Sbjct: 411 RSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATK---------GPRMPDGTRGFTM 453

[Close]

BLAST of CmoCh19G004430 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-44
Identity = 125/329 (37.99%), Postives = 185/329 (56.23%), Query Frame = 1


Query: 174 EDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 233
           ++++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 234 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGS 293
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 294 VKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWR 353
           +K++  C P    +    + K  K +     ++LHAFVEYE+VE AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 354 NALRLRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQR 413
           N LR++L+     K A  R  +    +         +Q   EK+      Q +  LH   
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQ-NHRLH--H 340

Query: 414 EEQGNEKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPLSSSTTTMELAGT 473
            +   + DGG  ++ +N  +G+  G+GR Q H       GN +G    SSS+        
Sbjct: 341 SDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQG-----GNGIGHGTASSSSH----PNY 400

Query: 474 MKQQQQQQPPGPRMPDGTRGFAMGRGKAV 501
              +  ++PPGPRMPDGTRGF MGRGKA+
Sbjct: 401 HPVEVSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of CmoCh19G004430 vs. Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-14
Identity = 57/201 (28.36%), Postives = 101/201 (50.25%), Query Frame = 1


Query: 148 PDTVVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDP 207
           P   V++ +   +  D     RS++ + ++  +  QV+++F D+NL     L   I K  
Sbjct: 9   PSNKVKEDESTDLRKDREKKKRSRVKQLLA-DIAKQVDFWFGDVNLHKDRFLREQIEKTR 68

Query: 208 DGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQS 267
           DGY+ IS++ASF K+K +      +A  ++NSS + ++  G K++R+ PL E   +++ S
Sbjct: 69  DGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDS 128

Query: 268 RIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKL 327
           R V  E LP++  H  + ++F   G V  +    P+   +G                 K 
Sbjct: 129 RTVYVELLPKNVTHSWIERVFGKYGMV--VYVSIPRYKSTG---------------DPKG 188

Query: 328 HAFVEYESVELAEKAVAELND 349
            AF+E+E+ E A KA+  LN+
Sbjct: 189 FAFIEFETQEQAAKAIEVLNN 190

[Close]

BLAST of CmoCh19G004430 vs. Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-13
Identity = 60/186 (32.26%), Postives = 100/186 (53.76%), Query Frame = 1


Query: 163 DYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKI 222
           D     RS++ + +S  +  QVE++F D+NL     +   I +  DGY+ I+V+ +F ++
Sbjct: 30  DNEKKKRSRVKQLLS-DVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRM 89

Query: 223 KALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQ 282
           K L      +A  L+NS+ + V+++G +++RK+PL E+  +++ SR V  E LP+   H 
Sbjct: 90  KNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHI 149

Query: 283 NLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKA 342
            L ++FS  G V  I           +    KS +       SK  AFVE+E+ E A+KA
Sbjct: 150 WLERVFSKCGHVVYI-----------SIPRYKSTR------HSKGFAFVEFETQEQAQKA 196

Query: 343 VAELND 349
           V  LN+
Sbjct: 210 VEMLNN 196

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BLAST of CmoCh19G004430 vs. TrEMBL
Match: A0A0A0K7B6_CUCSA (Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 2.9e-146
Identity = 292/333 (87.69%), Postives = 304/333 (91.29%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+RSDLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVS+QNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSIQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP VE+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAF 331
           RTCQPQISDSGASST+KSAKADGMHYS+K++ F
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKVYLF 320

[Close]

BLAST of CmoCh19G004430 vs. TrEMBL
Match: B9SSZ3_RICCO (Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.6e-144
Identity = 320/525 (60.95%), Postives = 377/525 (71.81%), Query Frame = 1


Query: 3   QHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 62
           Q  SSSS + S SDPSLSRN S S+LNAQAPEFVPTRPSS    QQ P     P PPP  
Sbjct: 18  QSQSSSSSTSSSSDPSLSRNVSFSKLNAQAPEFVPTRPSSHQQQQQQP-----PPPPPTA 77

Query: 63  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH-- 122
              R+ +  PPPPPPAMMH+YPPP   SPFHVPI SPVPV +HV+ + NHH H HH+H  
Sbjct: 78  SLNRLTVIPPPPPPPAMMHIYPPP---SPFHVPIHSPVPV-SHVIPVHNHHPHHHHQHSN 137

Query: 123 ------HHHSHH----VPVLYHPHN-----PQYYADNGGFH--DPDTVVQQAQKPQV-ET 182
                 HHH HH    VPV  H  N     P  Y  N   H      + ++ +K +V  +
Sbjct: 138 NPNHNHHHHQHHNQQYVPVRNHNQNSSQYVPLQYHGNQNHHYVKKGQLEEEVEKKEVASS 197

Query: 183 DYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKI 242
           D+ + +     ++   KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKK+
Sbjct: 198 DHMSKNDRNGNDEPMQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKV 257

Query: 243 KALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQ 302
           KA INS+S LA+ILRNS+KL+VSEDGK+V+R+ PL+E D+EELQSRIV+AENLPEDHCHQ
Sbjct: 258 KAAINSNSHLASILRNSAKLVVSEDGKRVRRQNPLTELDVEELQSRIVVAENLPEDHCHQ 317

Query: 303 NLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKA 362
           NLMKIFSAVGSVK IRTC PQ S  GASS ++SAK +GMH+S+KLHAFVEYESVE+AEKA
Sbjct: 318 NLMKIFSAVGSVKTIRTCPPQTSGGGASSASRSAKGEGMHFSNKLHAFVEYESVEIAEKA 377

Query: 363 VAELNDEGNWRNALRLRLMLSCPSKSALSRGKKGHSGEMNCKDDE--TSEQPRIEKHVDD 422
           VAELNDE NWR+ LR+RLML   SK   +RGKKGH G+ + +++E  TSEQP  EK ++D
Sbjct: 378 VAELNDEQNWRSGLRVRLMLKRASKPTQARGKKGHDGQGHSEEEEVSTSEQPPNEKQIED 437

Query: 423 LSDQVDIHLHEQR-EEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPL 482
            S Q D H HE   E+  NEKD G QR+ RNR RGKGRGR QYHH   NN GNHVGTPP 
Sbjct: 438 PSQQYDGHSHEHSGEDHVNEKD-GAQRKGRNRGRGKGRGRGQYHH---NNRGNHVGTPPS 497

Query: 483 SSSTTTMELAGTMKQQQQQQPPGPRMPDGTRGFAMGRGKAVSVSV 505
           ++      L    +    +QPPGPRMPDGT+GFAMGRGK V+V++
Sbjct: 498 NN------LIINEQPSMAKQPPGPRMPDGTKGFAMGRGKPVAVNI 523

[Close]

BLAST of CmoCh19G004430 vs. TrEMBL
Match: A0A061EXJ3_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.1e-140
Identity = 304/500 (60.80%), Postives = 373/500 (74.60%), Query Frame = 1


Query: 13  SQSDPSLSRNSSLSRLNAQAPEFVPTRPS-SRSDLQQPPHSAAGPAPPPPKQSPRILIPS 72
           S SDP LSRN S SRLNAQAPEFVPTR +  +   QQ             +QS R++IP 
Sbjct: 15  SSSDPQLSRNLSSSRLNAQAPEFVPTRSTPQQQQQQQQQQQQQQQQQQQQQQSHRMMIP- 74

Query: 73  PPPPPPAMMHVYPPPPPG-SPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHHHSHHVPVL 132
            PPPPPAM+HVYPPPPP  + FH+P+ SPVP+P H+V + +H   R+H HHHH  H P  
Sbjct: 75  -PPPPPAMLHVYPPPPPPPAAFHLPVHSPVPMPPHMVPVPHHMPMRNHHHHHH--HPPFQ 134

Query: 133 YHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDY----AAPSRSKLAEDVSLKLLNQVEY 192
            HPH+ +         + + VV++    +   ++    A+ S++ L+E+ +LK+LNQVEY
Sbjct: 135 NHPHHHRE-------QEVEAVVKKDHHKEQHKEHKDHGASCSKNGLSEEATLKILNQVEY 194

Query: 193 YFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 252
           YFSDLNL TTDHLMRFINKDP+GYVPISVVASFKKIKALI +H+QLA +LRNS KL+VSE
Sbjct: 195 YFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKLVVSE 254

Query: 253 DGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISD 312
           DGKKV+R+ PL+ESDMEELQSRI++AENLPEDHCHQNLMKIFS+VGSVK IRTCQPQ S 
Sbjct: 255 DGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQPQPSG 314

Query: 313 SGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPS 372
            G SS +++AK+DGMH+S+KLHAFVEYESVELAEKAVAELNDEGNWR+ LR+RLML   S
Sbjct: 315 GGVSSASRTAKSDGMHFSNKLHAFVEYESVELAEKAVAELNDEGNWRSGLRVRLMLRRVS 374

Query: 373 KSALSRGKKGHSGEMNCKDDE--TSEQPRIEKHVDDLSDQVDIHLHEQR-EEQGNEKDGG 432
           K   +RGKKGH GE + ++D+  TSEQ   +K  +D S   DIH HE   EE  NEK+GG
Sbjct: 375 KPTHTRGKKGHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHSHEYPGEEHSNEKEGG 434

Query: 433 GQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPLSSSTTTMELAGTMKQQQQQQPPGP 492
            Q++ RNR RGKGRGR+QYH+N +N+ GNHVGTPP ++S        T+     +QPPGP
Sbjct: 435 -QKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVA----KQPPGP 494

Query: 493 RMPDGTRGFAMGRGKAVSVS 504
           RMPDGTRGFAMGRGK V+V+
Sbjct: 495 RMPDGTRGFAMGRGKPVAVN 498

[Close]

BLAST of CmoCh19G004430 vs. TrEMBL
Match: A0A061EQ58_THECC (RNA-binding protein, putative isoform 3 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 2.6e-139
Identity = 304/501 (60.68%), Postives = 373/501 (74.45%), Query Frame = 1


Query: 13  SQSDPSLSRNSSLSRLNAQAPEFVPTRPS-SRSDLQQPPHSAAGPAPPPPKQSPRILIPS 72
           S SDP LSRN S SRLNAQAPEFVPTR +  +   QQ             +QS R++IP 
Sbjct: 15  SSSDPQLSRNLSSSRLNAQAPEFVPTRSTPQQQQQQQQQQQQQQQQQQQQQQSHRMMIP- 74

Query: 73  PPPPPPAMMHVYPPPPPG-SPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHHHSHHVPVL 132
            PPPPPAM+HVYPPPPP  + FH+P+ SPVP+P H+V + +H   R+H HHHH  H P  
Sbjct: 75  -PPPPPAMLHVYPPPPPPPAAFHLPVHSPVPMPPHMVPVPHHMPMRNHHHHHH--HPPFQ 134

Query: 133 YHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDY----AAPSRSKLAEDVSLKLLNQVEY 192
            HPH+ +         + + VV++    +   ++    A+ S++ L+E+ +LK+LNQVEY
Sbjct: 135 NHPHHHRE-------QEVEAVVKKDHHKEQHKEHKDHGASCSKNGLSEEATLKILNQVEY 194

Query: 193 YFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSE 252
           YFSDLNL TTDHLMRFINKDP+GYVPISVVASFKKIKALI +H+QLA +LRNS KL+VSE
Sbjct: 195 YFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKLVVSE 254

Query: 253 DGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISD 312
           DGKKV+R+ PL+ESDMEELQSRI++AENLPEDHCHQNLMKIFS+VGSVK IRTCQPQ S 
Sbjct: 255 DGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQPQPSG 314

Query: 313 SGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAV-AELNDEGNWRNALRLRLMLSCP 372
            G SS +++AK+DGMH+S+KLHAFVEYESVELAEKAV AELNDEGNWR+ LR+RLML   
Sbjct: 315 GGVSSASRTAKSDGMHFSNKLHAFVEYESVELAEKAVVAELNDEGNWRSGLRVRLMLRRV 374

Query: 373 SKSALSRGKKGHSGEMNCKDDE--TSEQPRIEKHVDDLSDQVDIHLHEQR-EEQGNEKDG 432
           SK   +RGKKGH GE + ++D+  TSEQ   +K  +D S   DIH HE   EE  NEK+G
Sbjct: 375 SKPTHTRGKKGHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHSHEYPGEEHSNEKEG 434

Query: 433 GGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPLSSSTTTMELAGTMKQQQQQQPPG 492
           G Q++ RNR RGKGRGR+QYH+N +N+ GNHVGTPP ++S        T+     +QPPG
Sbjct: 435 G-QKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVA----KQPPG 494

Query: 493 PRMPDGTRGFAMGRGKAVSVS 504
           PRMPDGTRGFAMGRGK V+V+
Sbjct: 495 PRMPDGTRGFAMGRGKPVAVN 499

[Close]

BLAST of CmoCh19G004430 vs. TrEMBL
Match: B9HGC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00450g PE=4 SV=2)

HSP 1 Score: 496.5 bits (1277), Expect = 4.2e-137
Identity = 312/519 (60.12%), Postives = 371/519 (71.48%), Query Frame = 1


Query: 5   SSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPKQS 64
           S   S S S S PSLSRN S S+LNAQAP FVPTRP S+               PPP+ +
Sbjct: 23  SLDQSSSSSSSGPSLSRNVSFSKLNAQAPAFVPTRPQSQPQ-------------PPPRMT 82

Query: 65  PRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNH-HYHRHHR---- 124
              +IP PPPPP AMMH+YPPP   SPFHVPI SPV +P HV+ +QNH H+H HH     
Sbjct: 83  ---VIPPPPPPPAAMMHMYPPP---SPFHVPIHSPVHLP-HVIPVQNHPHHHNHHHNSHN 142

Query: 125 --HHHHSHH------VPVLYH-PHNPQYYADNGGFHDPDTVVQQAQKPQV-ETDYAAPSR 184
             H+H  HH      VPV  H  H+ Q+ +     H  + V     K     +D+A+ S 
Sbjct: 143 HLHNHQQHHNQHQQYVPVRNHNQHHQQHNSKKVQQHSDEEVEVIGNKDAAASSDHASKSD 202

Query: 185 SKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSH 244
           SK  E ++ KLLNQVEYYFSDLNL TTDHLMRFI KDP+GYVPISVVASFKK+KA INS+
Sbjct: 203 SKSDEAMN-KLLNQVEYYFSDLNLATTDHLMRFITKDPEGYVPISVVASFKKVKAAINSN 262

Query: 245 SQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFS 304
           SQLANILRNS+KL+VS+DGKKV+R+ PL++SD+EELQSRIV+AENLPEDHCHQNLMKIFS
Sbjct: 263 SQLANILRNSTKLVVSDDGKKVRRQHPLTDSDVEELQSRIVVAENLPEDHCHQNLMKIFS 322

Query: 305 AVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDE 364
           AVGSVK IRTC PQ S  GASS ++SAKADGMH+S+KLHAFVEYE++E+AEKAVAELNDE
Sbjct: 323 AVGSVKTIRTCPPQTSGGGASSASRSAKADGMHFSNKLHAFVEYETIEIAEKAVAELNDE 382

Query: 365 GNWRNALRLRLMLSCPSKSALSRGKKGHSGEMNCKDDETS--EQPRIEKHVDDLSDQVDI 424
           GNWR+ LR+RLML   SKS  +RGKKGH G+ + ++DE S  EQ   +K  +DLS Q D 
Sbjct: 383 GNWRSGLRVRLMLKRGSKSTQARGKKGHDGQGHSEEDEISATEQMPNDKQTEDLSQQHDA 442

Query: 425 HLHE--QREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHH-NHNNNHGNHVGTPPLSSSTT 484
           H HE  Q E+  N+K+ G QR+ RNR RGKGRGR QYHH NH+NN GNH+GT P ++   
Sbjct: 443 HSHEHSQGEDHANDKE-GAQRKGRNRGRGKGRGRGQYHHNNHHNNRGNHLGTSPSNNPVI 502

Query: 485 TMELAGTMKQQQQQQPPGPRMPDGTRGFAMGRGKAVSVS 504
               A        +QPPGPRMPDGTRGFAMGRGK  +V+
Sbjct: 503 GEHPA------MAKQPPGPRMPDGTRGFAMGRGKPAAVN 513

[Close]

BLAST of CmoCh19G004430 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 429.1 bits (1102), Expect = 4.2e-120
Identity = 291/546 (53.30%), Postives = 357/546 (65.38%), Query Frame = 1


Query: 4   HSSSSSLSPSQS-DPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 63
           HS+SS+ S S S DPSL R+ SLSRLNA APEFVP R +                 PP  
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT-----------------PPLP 83

Query: 64  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHH-YHRHHRHH 123
           Q PR++IP  PPPP  M+H+Y   PP   F+ P+  PVP+  H+V +QNHH +HR H+HH
Sbjct: 84  QPPRMIIP--PPPPHGMLHMYHHQPP---FNTPVLGPVPIQPHLVPVQNHHPHHRFHQHH 143

Query: 124 HHSHHVPVLYHP-HNPQYYADNGGF---HDPDTVVQQA-------------QKPQVETDY 183
           HH+ H    Y P  N   Y   GG     +PD V ++              Q  +     
Sbjct: 144 HHNRHQNQQYVPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASV 203

Query: 184 AAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKA 243
           +  S++ L ED   K++NQVEYYFSDLNL TTDHLMRFI KDP+GYVPI VVASFKKIKA
Sbjct: 204 SIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKA 263

Query: 244 LINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNL 303
           +IN++SQLA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+QNL
Sbjct: 264 VINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNL 323

Query: 304 MKIFSAVGSVKNIRTCQPQISDSGASSTAKS-AKADGMHYSSKLHAFVEYESVELAEKAV 363
           MKIFS VGSVKNIRTCQPQ + SGA   A+S AK+DG  +S+K+HAFVEYE VELAE+AV
Sbjct: 324 MKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAV 383

Query: 364 AELNDEGNWRNALRLRLMLSCPS---KSALSRGKKGHSGEMNCKDDE--TSEQPRIEKHV 423
            EL++ GNWR+ L++RLML   +   K    RG+KGH  ++  ++D+  TSEQ  IEK  
Sbjct: 384 TELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQS 443

Query: 424 DDLSDQVDIHLHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH--------HNHNN 483
           DD S + D H+ EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H        H+HN 
Sbjct: 444 DDCSGEWDTHMQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQ 503

Query: 484 NH-----GNH-------VGTPPLSSSTTTMELAGTMKQQQQQQPPGPRMPDGTRGFAMGR 503
           NH     GNH       VGT P ++    ME  G  K    QQPPGPRMPDGTRGF+MGR
Sbjct: 504 NHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGK----QQPPGPRMPDGTRGFSMGR 542

[Close]

BLAST of CmoCh19G004430 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 222.6 bits (566), Expect = 5.9e-58
Identity = 154/372 (41.40%), Postives = 219/372 (58.87%), Query Frame = 1


Query: 146 HDPDT---VVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRF 205
           HDP     +   A +     + ++ S++ L++D+ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 206 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 265
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 266 EELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMH 325
           EELQ R V+AENLP+DH +QNL KIF  VG+VK IR C P  S+S         K D + 
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRP------KGDFL- 290

Query: 326 YSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPSKSALSRGKKGHSGEMN 385
            S+K+HA +EY++  +A+KAV +LNDE NWR  LR+RL+L C  KS L + ++   G + 
Sbjct: 291 MSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL-KNRRNFDGILI 350

Query: 386 CKDDETSEQPRIEKHVDDLSDQVDIHLHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQ 445
             DDE       E       D   +HL E Q +  G++ + GG   +  + RGKGRGRS 
Sbjct: 351 --DDELPSYESGE-------DSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSP 410

Query: 446 YHH-------NHNNNHGNHVGTPPLSSSTTTMELAGTMKQQQQQQPPGPRMPDGTRGFAM 505
             +       +     G  +G P L S  ++     T          GPRMPDGTRGF M
Sbjct: 411 RSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATK---------GPRMPDGTRGFTM 453

[Close]

BLAST of CmoCh19G004430 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-45
Identity = 125/329 (37.99%), Postives = 185/329 (56.23%), Query Frame = 1


Query: 174 EDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 233
           ++++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 234 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGS 293
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 294 VKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWR 353
           +K++  C P    +    + K  K +     ++LHAFVEYE+VE AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 354 NALRLRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQR 413
           N LR++L+     K A  R  +    +         +Q   EK+      Q +  LH   
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQ-NHRLH--H 340

Query: 414 EEQGNEKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPLSSSTTTMELAGT 473
            +   + DGG  ++ +N  +G+  G+GR Q H       GN +G    SSS+        
Sbjct: 341 SDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQG-----GNGIGHGTASSSSH----PNY 400

Query: 474 MKQQQQQQPPGPRMPDGTRGFAMGRGKAV 501
              +  ++PPGPRMPDGTRGF MGRGKA+
Sbjct: 401 HPVEVSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of CmoCh19G004430 vs. TAIR10
Match: AT4G32720.1 (AT4G32720.1 La protein 1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-12
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 1


Query: 172 LAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALI----- 231
           L E+ +  +L QVE+YFSD NL   D L + + +  DG V ++++ SF K++  +     
Sbjct: 6   LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDS 65

Query: 232 -------NSHSQLANILRNSSKLMVSEDGKKVKRKQPL--SESDMEELQSRIVIAENLPE 291
                  ++   +A+ LR SS L +S+DGKKV R   L   E  +E+L +R V A     
Sbjct: 66  KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSY 125

Query: 292 DHCHQNLMKIFSAVGSVKNIR 299
           D   +++   FS  G V ++R
Sbjct: 126 DVKREDVESFFSQYGKVNSVR 146

[Close]

BLAST of CmoCh19G004430 vs. TAIR10
Match: AT1G79880.1 (AT1G79880.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-11
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 1


Query: 170 SKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSH 229
           S   E+ + KLL QVE+YFSD NL T   L R + K  DG V + +V SF +++ L+   
Sbjct: 3   SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLG 62

Query: 230 S------------QLANILRNSSKLMVSEDGKKVKRKQPLS--ESDMEELQSRIVIAENL 289
           +            ++AN+LR S  L VS +G+++ R   LS  E  +E++  R + A   
Sbjct: 63  NINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPF 122

Query: 290 PEDHCHQNLMKIFSAVGSVKNIRTCQPQISD 307
                 +++   FS    V ++R   P I+D
Sbjct: 123 EYSIKMEDVSSFFSQYAKVNSVR-LPPNIAD 152

[Close]

BLAST of CmoCh19G004430 vs. NCBI nr
Match: gi|449444086|ref|XP_004139806.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus])

HSP 1 Score: 800.0 bits (2065), Expect = 2.6e-228
Identity = 443/509 (87.03%), Postives = 462/509 (90.77%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+RSDLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVS+QNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSIQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP VE+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQREEQG 420
           LRLMLSC SKSA  RGKKGH+GEMN KD +TSEQP IEKHVDDLSDQVD+H  EQREE G
Sbjct: 361 LRLMLSCSSKSAPVRGKKGHNGEMNYKDVDTSEQPAIEKHVDDLSDQVDVHPPEQREEHG 420

Query: 421 NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNN--HGNHVGTPPLSSSTTTMELAGTMKQQ 480
           NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNN  HGNH+GTPP SSS TT+E AGTMK  
Sbjct: 421 NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSS-TTIEQAGTMK-- 480

Query: 481 QQQQPPGPRMPDGTRGFAMGRGKAVSVSV 505
             QQPPGPRMPDGTRGF+MGRGK V+V++
Sbjct: 481 --QQPPGPRMPDGTRGFSMGRGKPVTVNM 491

[Close]

BLAST of CmoCh19G004430 vs. NCBI nr
Match: gi|659092715|ref|XP_008447184.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis melo])

HSP 1 Score: 798.1 bits (2060), Expect = 9.7e-228
Identity = 443/509 (87.03%), Postives = 460/509 (90.37%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+R DLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVSLQNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP +E+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQREEQG 420
           LRLMLSC SKSA  RGKKGH+GEMN KD + SEQP IEKHVDDLSDQVD+H  EQREE G
Sbjct: 361 LRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQREEHG 420

Query: 421 NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN--NHGNHVGTPPLSSSTTTMELAGTMKQQ 480
           NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN  NHGNHVGTPP SSS TT+E AGTMK  
Sbjct: 421 NEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSS-TTIEQAGTMK-- 480

Query: 481 QQQQPPGPRMPDGTRGFAMGRGKAVSVSV 505
             QQPPGPRMPDGTRGFAMGRGK V+V++
Sbjct: 481 --QQPPGPRMPDGTRGFAMGRGKPVTVNM 491

[Close]

BLAST of CmoCh19G004430 vs. NCBI nr
Match: gi|659092717|ref|XP_008447185.1| (PREDICTED: la-related protein 6B isoform X2 [Cucumis melo])

HSP 1 Score: 660.2 bits (1702), Expect = 3.2e-186
Identity = 364/415 (87.71%), Postives = 377/415 (90.84%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+R DLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVSLQNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP +E+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 413
           LRLMLSC SKSA  RGKKGH+GEMN KD + SEQP IEKHVDDLSDQVD+H  EQ
Sbjct: 361 LRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQ 402

[Close]

BLAST of CmoCh19G004430 vs. NCBI nr
Match: gi|659092719|ref|XP_008447186.1| (PREDICTED: la-related protein 6B isoform X3 [Cucumis melo])

HSP 1 Score: 660.2 bits (1702), Expect = 3.2e-186
Identity = 364/415 (87.71%), Postives = 377/415 (90.84%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+R DLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVSLQNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP +E+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 413
           LRLMLSC SKSA  RGKKGH+GEMN KD + SEQP IEKHVDDLSDQVD+H  EQ
Sbjct: 361 LRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQ 402

[Close]

BLAST of CmoCh19G004430 vs. NCBI nr
Match: gi|659092721|ref|XP_008447187.1| (PREDICTED: la-related protein 6B isoform X4 [Cucumis melo])

HSP 1 Score: 660.2 bits (1702), Expect = 3.2e-186
Identity = 364/415 (87.71%), Postives = 377/415 (90.84%), Query Frame = 1


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSS     QSD SLSRNSSLSRLNAQAPEFVPTRPS+R DLQ        P PPP
Sbjct: 1   MAQHSSSS-----QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPP 60

Query: 61  PKQSPRILIPSPPPPPP-AMMHVYPPPPPGSPFHVPIQS-PVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPSPPPPPP AMMH YPPPPPGSPFHVPIQ+ PVPVPTHVVSLQNH YH HH
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVS 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP +E+DYAAPSRSKL ++VS
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
            KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILR
Sbjct: 181 QKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 413
           LRLMLSC SKSA  RGKKGH+GEMN KD + SEQP IEKHVDDLSDQVD+H  EQ
Sbjct: 361 LRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQ 402

The following BLAST results are available for this feature:

BLAST of CmoCh19G004430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP6B_ARATH	7.4e-119	53.30	La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2	[more]
LRP6C_ARATH	1.1e-56	41.40	La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1	[more]
LRP6A_ARATH	2.1e-44	37.99	La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1	[more]
LARP7_XENTR	5.0e-14	28.36	La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1	[more]
LARP7_DANRE	2.5e-13	32.26	La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1	[more]

BLAST of CmoCh19G004430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7B6_CUCSA	2.9e-146	87.69	Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1	[more]
B9SSZ3_RICCO	1.6e-144	60.95	Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV...	[more]
A0A061EXJ3_THECC	1.1e-140	60.80	RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]
A0A061EQ58_THECC	2.6e-139	60.68	RNA-binding protein, putative isoform 3 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]
B9HGC1_POPTR	4.2e-137	60.12	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00450g PE=4 SV=2	[more]

BLAST of CmoCh19G004430 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43970.1	4.2e-120	53.30	RNA-binding protein	[more]
AT3G19090.1	5.9e-58	41.40	RNA-binding protein	[more]
AT5G46250.1	1.2e-45	37.99	RNA-binding protein	[more]
AT4G32720.1	2.2e-12	32.62	La protein 1	[more]
AT1G79880.1	7.1e-11	31.79	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmoCh19G004430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444086\|ref\|XP_004139806.1\|	2.6e-228	87.03	PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus]	[more]
gi\|659092715\|ref\|XP_008447184.1\|	9.7e-228	87.03	PREDICTED: la-related protein 6B isoform X1 [Cucumis melo]	[more]
gi\|659092717\|ref\|XP_008447185.1\|	3.2e-186	87.71	PREDICTED: la-related protein 6B isoform X2 [Cucumis melo]	[more]
gi\|659092719\|ref\|XP_008447186.1\|	3.2e-186	87.71	PREDICTED: la-related protein 6B isoform X3 [Cucumis melo]	[more]
gi\|659092721\|ref\|XP_008447187.1\|	3.2e-186	87.71	PREDICTED: la-related protein 6B isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR002344	Lupus_La
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0030529	intracellular ribonucleoprotein complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004430.1	CmoCh19G004430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 268..365 score: 9
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 183..200 score: 4.2E-9coord: 209..224 score: 4.2E-9coord: 325..343 score: 4.2E-9coord: 240..253 score: 4.
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 181..238 score: 4.4
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 174..254 score: 2.8
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 170..261 score: 25
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 173..257 score: 2.4
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 174..264 score: 9.98
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 259..368 score: 6.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 232..358 score: 9.09
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 16..126 score: 1.5E-216coord: 162..511 score: 1.5E
None	No IPR available	PANTHER	PTHR22792:SF52	LA-RELATED PROTEIN 6B	coord: 16..126 score: 1.5E-216coord: 162..511 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G004430	CmaCh19G004360	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004430	Cp4.1LG15g03350	Cucurbita pepo (Zucchini)	cmocpeB481

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004430	Cucumber (Gy14) v1	cgycmoB0868
CmoCh19G004430	Cucumber (Chinese Long) v2	cmocuB507
CmoCh19G004430	Melon (DHL92) v3.5.1	cmomeB459
CmoCh19G004430	Bottle gourd (USVL1VR-Ls)	cmolsiB472
CmoCh19G004430	Cucumber (Gy14) v2	cgybcmoB356
CmoCh19G004430	Melon (DHL92) v3.6.1	cmomedB530
CmoCh19G004430	Cucumber (Chinese Long) v3	cmocucB0607