CmoCh19G004420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Expressed protein) (Late embryogenesis abundant hydroxyproline-rich glycoprotein)
Location	Cmo_Chr19 : 5389392 .. 5394402 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTATCAAGAGGCGCCGCCCAGAGCCGCCCTCCGTACATCCCCAGATCCTCCTCCTCCTCCGCCTCCTTCAAGGGCTGCTGCTGCTGCCTGTTCCTCCTCTTCTCCTTCCTAGCTCTCTTAATCCTCGCCGTCGTCCTTGTCGTCGTCCTCGCCCTAAAGCCAAAGAAGCCCCAATTCGATCTCCAGCAGGTGGGCATCCAGTACATGAACATAACCACTCCCAATCCCACCGCCGCCTCCCTTTCCCTCGACATTCGAATGATTTTCACCGCCGTTAACCCCAACAAAGTGGGAATCAAGTACGGGGAGTCTCGGTTCACGGTCATGTACCGAGGGATTCCACTTGGGAGAGCTTCAATTCCCGGATTCTTTCAAGACCCACATAGCCAACGCCAGGTCGACGCCACCATCGCCGTCGATCGTGTCAGCCTCCTCCAAGCCGACGCCGCTGATTTGATCCGTGACGCCTCGTTAAACGACCGTGTGGAGCTGAGGATACTCGGCGATGTTGCCGCTAAGATCCGCCTCTTGTCCTTTGATTCCCCCGGCGTTCAGGTACCACTAATCTCTCTAAGGGCATCCTTGTAATTTCATCATTCTAATGCTCTGCCCCTGTCCTGTCCTGTCCTGTCCTTCCCTGCCCTATTGTCTCTGCCATTTGTCCCCCATTTTAATGCTCTTTTTCCCCCACATTTCTAAATCCTCAAGGCCACATTATGCATGACTAGAAAAGATTTAGATAGTTGTACTAAAACCCAATTAGGATCGAGCTAAACTCATTTTAACGAAAACCCAATTCCGATCGAGTTAAACTCATTTTAACGAAAACCCAATTATGATCGAGCTGAACTCATTTTAACGAAAACCCTTTGATGTATGATTGTTTTATAGGATAATACGAACCATGAAAAGGATTTGTGTTAAAAACGAGAAACAGAAGTGAGATTGAAAGTGTTATCTAATCGTATACAAGCTACCTAACTATCAGTGATGGTTTAAAAAATTTGATGAATTCAGACTACCCACCCAAACTATAAAAGTTGAGTTGTATTAGATTTATTTGTTTTTTTGATTGAAAATCTAAAAATTCAATCCAGTTTGCTAGTTGACAATTTTTTTTATCGAGTCAATTAGACCAATTTAAAAATAGGGTTACAATCTAGTGCAACGTGACTTTTGGATGAATATTTGTTAATGTTTAGGTATGGGTGGATTGTGCAATTGTGATTAGTCCAAGGAAGCAATCTCTCACATACAAGCAATGTGGTTTTGATGGCTTAAATGTATGACTCACTCCCTCTTCCCTTCCCATCTAAAAAAATTCTTTCATTACTTTGTCTTTTAACCCCTTCGTTTCGGTTCCTAAATAATTAGGTCATTCAGTCTTTACCAATAATTCGAAGGGCTTAAATAGATGAAAATTTAGAGACTAAATTGAATACTTCAAGATTTTTTTAGAAACCCGAAGTGTGTAATATAGTGGAGTAAATTATATTAAATGAAATATAATTATAAATTTTATACAATATTAATAATGTATTAAAAAATAATAAATAAAATATTTAAATGTATATATAAAATAATTATTACAATAGAATACTTATTTATTTTTTATTAATTATAATTAGAATTTGAATCAATTAATTATACCCCTAAAATATATCTAATTGAAAAAAGAAAATAGTTATAAAAGAGAGAGAAACAATACTAAACTTATATAGTTGAAAAAAAAAAATAATGTGTAACAAACCTAAATTTTTATATATTTAGAGTCGTTATTGATGTCTCTTAACGTAGAAATATAACTCTTAAATGAACATTATTTATAGCATATACTTTGAAAACATTCGGAACAACCTTAAATTTCCAGAAAATACGGTCGGTTTTACGTGTTTCGAACAAAAACACCGGAATTTAAAACAATAAAAATAATTACAAAATAAAATAATTTAAATGATGAAATGCCATCATCCTATTCTAACCAAAGACTAGGAAATTAAATATGTGACTACCTTATGCACGTGCCACAGTCTCTATTTGCGATGCTGCTGTCATCCGTATATGAGCGTCTTGCCTTTACCTGAAAAATGATATGACACACATCTTGAGTATTGAAGAATACTCAGTAAGTGATCCCACTATAGGGGCCATGTTAATGCAAACACATGCAATCCTGCTCTTGGGACCTATCTTTATTCTCTTGGGGTGGCCTCTAGTCTCAGACTAATTTGGATGCGTAGTACTTCCCTACTCACGACCCACACGTGCGAGTGTGAATCCCTAGGGGGCTTGCACACCCCCTGGACCCTCTCCGGTCAAGCGAATCTGTAAGGACGTCCGAAGGTCAACTGAACCTCTTGGTGTCATGCTCCCCATGAACACACTCATCATCATACTGTGCGTTCGCACTCATCGTCTTTGAGGAAGTATTTCTATGCTTATAAACATTCAACATGCATGAGATCCCTCTAATGTCTACCGTATCATCTCTTCTGACACAATCCTCTAGTTTCATTTATTTGTTACATTAACACATGCTCGTGAATATGTATATTAATATCATTTTCATGCTCTTAGGGTTGTGTCCTATGTCGATCTATCGACATGATGCAATATGACACTCATAATCATAAAGCATGCTTAACATGAAAAACATCAACATATTAAGATAAACATCATGTAATCATCATACTCATCATAATGTCATCAAATGCATCAAACATATCATGTACGTCATGCATCGGAACATAAATCACGTGCATATAACATGCATCACAGCTCAAACATCATACTCATGCATCATCATAGCTGATACATCATCATGCTCGTAAATATAACTCTAACGCATACAATTTTCTAGCCTATCCTATAGTAAGGCCACTTCCTTGGTTGGCCTTGGCCGAAGTACCCCCTAATTAGCTAAACGTAAGCTCTCGTTCCTTGTGAGCTGCTCCAAACGTTGCTGGAGTTTGTTTCCTATCACATCGTTCGTCACCTTCCATTAGTATTTCACAATTAAATTAATAATGAATTAATTAACGTGAAATATGGCCCAAAATGACCTCAGTTACCTTAATCGGGGTCGAAAATAGTCCAAAAGAATCGAAACAGTGGAAACTAGGCCAAAATCAAAGAGTCGAGCCAAACAGCCGCTGGGAGCCTCCGGAGAGCCTTCGAAAAATTTGTCGGAGAGCCGCTGGAGGAAGACTACGAGCCGTCTAAGCTGAGACGGGCCGAGAGATTGCCTGTGTTGCTGGGTGCCACGTGGCAGCAACAAAGCGTGCCACATCGTATAGGCACTCTGGGTCGAGGCACGGGTCGAAGGCTGGTTCGGGTCATGTCTGCAGGCTAGCTTCTGGACTTTGATTCACGGGCTGGGCCGCAGGTGAGTTTGGGTCGTGGTCTTAAGGATATTTAGTAATAAATTATAATTTACCATATCTATTATATTTGATATTTTATTATTGTCTTTCTTACCATAAGTATCTTTCCATTTATTACTTTTTCCATAACCTTGTAATTTATTTGATTATAAATAAGATAACTTTCACACCATTTAGGTGTGGTGGATTAAACAAAAATTCTCATGGTATCAGAGCCTTTCGGTTTAGCAACTTCGATCCTTTATTTTTAATGGCTTATGAATCCCCTACTCATCTTCTTCTCCACCACCCCTGCTGGCTTTGATGTCGCAGGCGTAGTCTCCATGGCTGCCGCAAGCGGAGCCGATTGATTACTCTTCGCTCCACTCTTTTGACCTCCAAATCACTCTTCGTCATACTCTATACATACAACCTCACCTTAGCTAACATAGCCTCTCTCATTTTCTTTCCAATCTTCCCTTCATCCTTCGTCAAAACCCTAACCTAAACCTATCGACCTTTTGCAGAGATTTACCTTTGGAATCTGGGTGCCGCACTGGCCTTTTCGCCAACCAAGTCGCTGCCGCCCTTCTCTCCAAAATTGGCTCCTTCGCCCACTGTGGCGACTCTTCCGGCTTCAACATTGTCTTTGTCCCTTGCTCTAGGTTTCCCATTCTACTTCTTGGGTTAGACATATTCTCACCAGAGCCAAGGCAGCATCGTCGCTACCTCTGCAATTTTCGATGGCCAAGAAAGTGTTTCTCTATGCCTCCTCTGAACCAGGTTGTTGACATCTTCACGAAAAGTGTTTCTCAACCTCTCTTCGAATTTTTCAGATCCAAGCTTCACGTTCATTTAAATCCGACGCTCAGCTTGCGGTGAGGTGTTAAAGATATTTAGTAATAACTTATAATTTACCATATATATTATATTTGATATTTTATTATTGTCTTTCTTACCATAGGTATCTTTCCATGTATTACTCTTTCCATATTCTTATAATTTATTTGATTATAAATAAGATAACTTTCACACTATGTAGGTGTGGTGGTGGGCTACTGGGCCGAAAGATTTTTGGGTCGAGCTAGAATTTGGGCCTCGGGTTTGCAGGCTGGACCGCAAGTTTGGGCCGCTGAACTTGGGTCGTGGGTATCCGATTCGGGTTGACTCGGATTCGACTGATCCTTCTTCCTTACCCAGTTTGTCGCGATTTTCTTACGTCAATTTTCTCTCTCTTCTGTGCGGTGGTTTTCGACGTCTTTTTCGATCAATTCTAGCACCTTCCTCTTTGTCTCCGTTAGCTTACTCTTCCCTAAGGTATTTCGAGGTCGTTTTTTTGCTTGTGACGCAAATCCGTCATCTCAAATCTGGTTTTGAAACCTACGACTTATGTGCAGCGTCCGATCGCCCGACGGTGAAGGTCACGGCCTAAACGTGACGTATTTGGTATTCTCAATCATGTCCTCTCTCTTTTATACCATCCCTAGAGTTATCCTCACGTATTTTCTCATCGAATTGTGTTCACCGGAAACTTACAAATCCTTTCTCTCTCTCTTTCTGAGTTTTTCTCTGTTTGCAGGAGTTGTGGGAAATGGTTGAAGGCTGGGAGGTGTTGGCGATCCATGGAGTTCGCTGTTGTGTGA

mRNA sequence

ATGCCGTTATCAAGAGGCGCCGCCCAGAGCCGCCCTCCGTACATCCCCAGATCCTCCTCCTCCTCCGCCTCCTTCAAGGGCTGCTGCTGCTGCCTGTTCCTCCTCTTCTCCTTCCTAGCTCTCTTAATCCTCGCCGTCGTCCTTGTCGTCGTCCTCGCCCTAAAGCCAAAGAAGCCCCAATTCGATCTCCAGCAGGTGGGCATCCAGTACATGAACATAACCACTCCCAATCCCACCGCCGCCTCCCTTTCCCTCGACATTCGAATGATTTTCACCGCCGTTAACCCCAACAAAGTGGGAATCAAGTACGGGGAGTCTCGGTTCACGGTCATGTACCGAGGGATTCCACTTGGGAGAGCTTCAATTCCCGGATTCTTTCAAGACCCACATAGCCAACGCCAGGTCGACGCCACCATCGCCGTCGATCGTGTCAGCCTCCTCCAAGCCGACGCCGCTGATTTGATCCGTGACGCCTCGTTAAACGACCGTGTGGAGCTGAGGATACTCGGCGATGTTGCCGCTAAGATCCGCCTCTTGTCCTTTGATTCCCCCGGCGTTCAGGTACCACTAATCTCTCTAAGGGCATCCTTCGTCCGATCGCCCGACGGTGAAGGTCACGGCCTAAACGTGACGAGTTGTGGGAAATGGTTGAAGGCTGGGAGGTGTTGGCGATCCATGGAGTTCGCTGTTGTGTGA

Coding sequence (CDS)

ATGCCGTTATCAAGAGGCGCCGCCCAGAGCCGCCCTCCGTACATCCCCAGATCCTCCTCCTCCTCCGCCTCCTTCAAGGGCTGCTGCTGCTGCCTGTTCCTCCTCTTCTCCTTCCTAGCTCTCTTAATCCTCGCCGTCGTCCTTGTCGTCGTCCTCGCCCTAAAGCCAAAGAAGCCCCAATTCGATCTCCAGCAGGTGGGCATCCAGTACATGAACATAACCACTCCCAATCCCACCGCCGCCTCCCTTTCCCTCGACATTCGAATGATTTTCACCGCCGTTAACCCCAACAAAGTGGGAATCAAGTACGGGGAGTCTCGGTTCACGGTCATGTACCGAGGGATTCCACTTGGGAGAGCTTCAATTCCCGGATTCTTTCAAGACCCACATAGCCAACGCCAGGTCGACGCCACCATCGCCGTCGATCGTGTCAGCCTCCTCCAAGCCGACGCCGCTGATTTGATCCGTGACGCCTCGTTAAACGACCGTGTGGAGCTGAGGATACTCGGCGATGTTGCCGCTAAGATCCGCCTCTTGTCCTTTGATTCCCCCGGCGTTCAGGTACCACTAATCTCTCTAAGGGCATCCTTCGTCCGATCGCCCGACGGTGAAGGTCACGGCCTAAACGTGACGAGTTGTGGGAAATGGTTGAAGGCTGGGAGGTGTTGGCGATCCATGGAGTTCGCTGTTGTGTGA

Homology

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BLAST of CmoCh19G004420 vs. TrEMBL
Match: A0A0A0K5H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G223380 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 168/203 (82.76%), Postives = 179/203 (88.18%), Query Frame = 1


Query: 12  PPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYM 71
           P Y PRSSSSSA+FKGCCCCLFLLFSFLALL+LA+VLVVVLALKPKKPQFDLQQV +QY+
Sbjct: 14  PRYNPRSSSSSATFKGCCCCLFLLFSFLALLVLAIVLVVVLALKPKKPQFDLQQVKVQYV 73

Query: 72  NITTPNPTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASIPGFFQDPHS 131
            IT PNPT ASLSL+IRMIFTAVNPNKVGIKY ESRFTVMYRGIPLGRAS+PGFFQDPHS
Sbjct: 74  GITNPNPTTASLSLNIRMIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHS 133

Query: 132 QRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFDSPGVQVPLI 191
           QRQVDATIAVDRV+LLQADAADLIRDASLNDRVELRILGDVAAKIRLLSF+SPGVQV   
Sbjct: 134 QRQVDATIAVDRVNLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV--- 193

Query: 192 SLRASFVRSPDGEGHGLNVTSCG 215
           S+  + V SP      L    CG
Sbjct: 194 SVDCAIVISP--RKQSLTYKQCG 211

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BLAST of CmoCh19G004420 vs. TrEMBL
Match: A0A061DZ99_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 OS=Theobroma cacao GN=TCM_006430 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.5e-75
Identity = 156/220 (70.91%), Postives = 175/220 (79.55%), Query Frame = 1


Query: 9   QSRPPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGI 68
           Q   PY PRSSSSSASFKGCCCCLFLLFSFLALL+LAVVL++VLA+KPKKPQFDLQQVG+
Sbjct: 38  QRHHPYYPRSSSSSASFKGCCCCLFLLFSFLALLVLAVVLIIVLAVKPKKPQFDLQQVGV 97

Query: 69  QYMNITTPNPTA--------------ASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRG 128
           QYM I+T NP+A              ASLSL I M+FTAVNPNKVGIKYGESRFTVMYRG
Sbjct: 98  QYMGISTSNPSAFDGAAAAVTTTPTTASLSLTIHMLFTAVNPNKVGIKYGESRFTVMYRG 157

Query: 129 IPLGRASIPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAA 188
           IPLG+A++PGFFQ+ HS R V+ATIAVDR +L+QADAADLIRDASLNDRVELR+LGDV A
Sbjct: 158 IPLGKAAVPGFFQEAHSTRNVEATIAVDRANLMQADAADLIRDASLNDRVELRVLGDVGA 217

Query: 189 KIRLLSFDSPGVQVPLISLRASFVRSPDGEGHGLNVTSCG 215
           KIR+L FDSPGVQV   S+  + V SP      L    CG
Sbjct: 218 KIRVLDFDSPGVQV---SIDCAIVISP--RKQSLTYKQCG 252

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BLAST of CmoCh19G004420 vs. TrEMBL
Match: A0A061DYB0_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_006430 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.7e-74
Identity = 148/193 (76.68%), Postives = 165/193 (85.49%), Query Frame = 1


Query: 9   QSRPPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGI 68
           Q   PY PRSSSSSASFKGCCCCLFLLFSFLALL+LAVVL++VLA+KPKKPQFDLQQVG+
Sbjct: 97  QRHHPYYPRSSSSSASFKGCCCCLFLLFSFLALLVLAVVLIIVLAVKPKKPQFDLQQVGV 156

Query: 69  QYMNITTPNPTA--------------ASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRG 128
           QYM I+T NP+A              ASLSL I M+FTAVNPNKVGIKYGESRFTVMYRG
Sbjct: 157 QYMGISTSNPSAFDGAAAAVTTTPTTASLSLTIHMLFTAVNPNKVGIKYGESRFTVMYRG 216

Query: 129 IPLGRASIPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAA 188
           IPLG+A++PGFFQ+ HS R V+ATIAVDR +L+QADAADLIRDASLNDRVELR+LGDV A
Sbjct: 217 IPLGKAAVPGFFQEAHSTRNVEATIAVDRANLMQADAADLIRDASLNDRVELRVLGDVGA 276

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BLAST of CmoCh19G004420 vs. TrEMBL
Match: M5Y567_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010161mg PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.1e-74
Identity = 156/219 (71.23%), Postives = 176/219 (80.37%), Query Frame = 1


Query: 13  PYIPR---SSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQ 72
           PY P    SSSSSASFKGCCCCLFLLFSFLALL+LAVVLV++LA+KPKKPQFDLQQVG+Q
Sbjct: 42  PYYPTTSSSSSSSASFKGCCCCLFLLFSFLALLVLAVVLVIILAVKPKKPQFDLQQVGVQ 101

Query: 73  YMNITTPNPT--------------AASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGI 132
           YM I +PNPT              +ASLSL IRM+F+AVNPNKVGI+YGESRFTVMYRGI
Sbjct: 102 YMGINSPNPTPAAAATADPNQNPTSASLSLSIRMLFSAVNPNKVGIRYGESRFTVMYRGI 161

Query: 133 PLGRASIPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAK 192
           PLG+AS+PGFFQD H+ RQV ATI+VDRV+LLQADAADLIRDASLNDRVELR+LGDV AK
Sbjct: 162 PLGKASVPGFFQDAHTVRQVVATISVDRVNLLQADAADLIRDASLNDRVELRVLGDVGAK 221

Query: 193 IRLLSFDSPGVQVPLISLRASFVRSPDGEGHGLNVTSCG 215
           IR+L+FDSPGVQV   S+  + V SP      L    CG
Sbjct: 222 IRVLNFDSPGVQV---SVDCAIVISP--RKQSLTYKQCG 255

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BLAST of CmoCh19G004420 vs. TrEMBL
Match: W9RV36_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024155 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.0e-73
Identity = 147/190 (77.37%), Postives = 166/190 (87.37%), Query Frame = 1


Query: 14  YIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYMNI 73
           Y   SSSSSASF+GCCCCLFLLFSFLALL+LA+VLV++LA+KPKKPQFDLQQVG+QYM I
Sbjct: 34  YPTTSSSSSASFRGCCCCLFLLFSFLALLVLAIVLVIILAVKPKKPQFDLQQVGVQYMGI 93

Query: 74  TTPNPTA---------------ASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLG 133
           T PNPT+               ASLSL+IRM+FTAVNPNKVGIKYGESRF+VMYRGIPLG
Sbjct: 94  TAPNPTSAMTTTTDPNPNPTTTASLSLNIRMLFTAVNPNKVGIKYGESRFSVMYRGIPLG 153

Query: 134 RASIPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRL 189
           +AS+PGF+Q+ HS RQV ATIAVDRV+LLQADAADLIRDASLNDRVELR+LGDV AKIR+
Sbjct: 154 KASVPGFYQEAHSVRQVVATIAVDRVNLLQADAADLIRDASLNDRVELRVLGDVGAKIRV 213

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BLAST of CmoCh19G004420 vs. TAIR10
Match: AT2G01080.1 (AT2G01080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 264.6 bits (675), Expect = 5.6e-71
Identity = 136/187 (72.73%), Postives = 163/187 (87.17%), Query Frame = 1


Query: 7   AAQSRPPYIPR-SSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQ 66
           AAQ++ PY    SSSSSAS KGCCCCLFLLF+FLALL+LAVVL+V+LA+KPKKPQFDLQQ
Sbjct: 18  AAQNQQPYYRSYSSSSSASLKGCCCCLFLLFAFLALLVLAVVLIVILAVKPKKPQFDLQQ 77

Query: 67  VGIQYMNITTPN----PTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRAS 126
           V + YM I+ P+    PT ASLSL IRM+FTAVNPNKVGI+YGES FTVMY+G+PLGRA+
Sbjct: 78  VAVVYMGISNPSAVLDPTTASLSLTIRMLFTAVNPNKVGIRYGESSFTVMYKGMPLGRAT 137

Query: 127 IPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSF 186
           +PGF+QD HS + V+ATI+VDRV+L+QA AADL+RDASLNDRVEL + GDV AKIR+++F
Sbjct: 138 VPGFYQDAHSTKNVEATISVDRVNLMQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNF 197

Query: 187 DSPGVQV 189
           DSPGVQV
Sbjct: 198 DSPGVQV 204

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BLAST of CmoCh19G004420 vs. NCBI nr
Match: gi|659092733|ref|XP_008447190.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 5.5e-84
Identity = 166/181 (91.71%), Postives = 174/181 (96.13%), Query Frame = 1


Query: 12  PPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYM 71
           P Y PRSSSSSA+FKGCCCCLFLLFSFLALL+LA+VLVVVLALKPKKPQFDLQQVG+QYM
Sbjct: 67  PRYNPRSSSSSATFKGCCCCLFLLFSFLALLVLAIVLVVVLALKPKKPQFDLQQVGVQYM 126

Query: 72  NITTPNPTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASIPGFFQDPHS 131
            IT PNPT ASLSL+IRMIFTAVNPNKVGIKY ESRFTVMYRGIPLGRAS+PGFFQDPHS
Sbjct: 127 GITNPNPTTASLSLNIRMIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHS 186

Query: 132 QRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFDSPGVQVPLI 191
           QRQVDATIAVDRV+LLQADAADLIRDASLNDRVELRILGDVAAKIRLLSF+SPGVQV LI
Sbjct: 187 QRQVDATIAVDRVNLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQVLLI 246

Query: 192 S 193
           S
Sbjct: 247 S 247

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BLAST of CmoCh19G004420 vs. NCBI nr
Match: gi|659092735|ref|XP_008447191.1| (PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 1.2e-83
Identity = 170/203 (83.74%), Postives = 180/203 (88.67%), Query Frame = 1


Query: 12  PPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYM 71
           P Y PRSSSSSA+FKGCCCCLFLLFSFLALL+LA+VLVVVLALKPKKPQFDLQQVG+QYM
Sbjct: 67  PRYNPRSSSSSATFKGCCCCLFLLFSFLALLVLAIVLVVVLALKPKKPQFDLQQVGVQYM 126

Query: 72  NITTPNPTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASIPGFFQDPHS 131
            IT PNPT ASLSL+IRMIFTAVNPNKVGIKY ESRFTVMYRGIPLGRAS+PGFFQDPHS
Sbjct: 127 GITNPNPTTASLSLNIRMIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHS 186

Query: 132 QRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFDSPGVQVPLI 191
           QRQVDATIAVDRV+LLQADAADLIRDASLNDRVELRILGDVAAKIRLLSF+SPGVQV   
Sbjct: 187 QRQVDATIAVDRVNLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV--- 246

Query: 192 SLRASFVRSPDGEGHGLNVTSCG 215
           S+  + V SP      L    CG
Sbjct: 247 SVDCAIVISP--RKQSLTYKQCG 264

[Close]

BLAST of CmoCh19G004420 vs. NCBI nr
Match: gi|449444084|ref|XP_004139805.1| (PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 3.0e-82
Identity = 168/203 (82.76%), Postives = 179/203 (88.18%), Query Frame = 1


Query: 12  PPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYM 71
           P Y PRSSSSSA+FKGCCCCLFLLFSFLALL+LA+VLVVVLALKPKKPQFDLQQV +QY+
Sbjct: 14  PRYNPRSSSSSATFKGCCCCLFLLFSFLALLVLAIVLVVVLALKPKKPQFDLQQVKVQYV 73

Query: 72  NITTPNPTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASIPGFFQDPHS 131
            IT PNPT ASLSL+IRMIFTAVNPNKVGIKY ESRFTVMYRGIPLGRAS+PGFFQDPHS
Sbjct: 74  GITNPNPTTASLSLNIRMIFTAVNPNKVGIKYEESRFTVMYRGIPLGRASVPGFFQDPHS 133

Query: 132 QRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFDSPGVQVPLI 191
           QRQVDATIAVDRV+LLQADAADLIRDASLNDRVELRILGDVAAKIRLLSF+SPGVQV   
Sbjct: 134 QRQVDATIAVDRVNLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFNSPGVQV--- 193

Query: 192 SLRASFVRSPDGEGHGLNVTSCG 215
           S+  + V SP      L    CG
Sbjct: 194 SVDCAIVISP--RKQSLTYKQCG 211

[Close]

BLAST of CmoCh19G004420 vs. NCBI nr
Match: gi|590683364|ref|XP_007041580.1| (Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 [Theobroma cacao])

HSP 1 Score: 290.0 bits (741), Expect = 3.6e-75
Identity = 156/220 (70.91%), Postives = 175/220 (79.55%), Query Frame = 1


Query: 9   QSRPPYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGI 68
           Q   PY PRSSSSSASFKGCCCCLFLLFSFLALL+LAVVL++VLA+KPKKPQFDLQQVG+
Sbjct: 38  QRHHPYYPRSSSSSASFKGCCCCLFLLFSFLALLVLAVVLIIVLAVKPKKPQFDLQQVGV 97

Query: 69  QYMNITTPNPTA--------------ASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRG 128
           QYM I+T NP+A              ASLSL I M+FTAVNPNKVGIKYGESRFTVMYRG
Sbjct: 98  QYMGISTSNPSAFDGAAAAVTTTPTTASLSLTIHMLFTAVNPNKVGIKYGESRFTVMYRG 157

Query: 129 IPLGRASIPGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAA 188
           IPLG+A++PGFFQ+ HS R V+ATIAVDR +L+QADAADLIRDASLNDRVELR+LGDV A
Sbjct: 158 IPLGKAAVPGFFQEAHSTRNVEATIAVDRANLMQADAADLIRDASLNDRVELRVLGDVGA 217

Query: 189 KIRLLSFDSPGVQVPLISLRASFVRSPDGEGHGLNVTSCG 215
           KIR+L FDSPGVQV   S+  + V SP      L    CG
Sbjct: 218 KIRVLDFDSPGVQV---SIDCAIVISP--RKQSLTYKQCG 252

[Close]

BLAST of CmoCh19G004420 vs. NCBI nr
Match: gi|658008149|ref|XP_008339262.1| (PREDICTED: uncharacterized protein LOC103402303 [Malus domestica])

HSP 1 Score: 285.8 bits (730), Expect = 6.7e-74
Identity = 155/212 (73.11%), Postives = 174/212 (82.08%), Query Frame = 1


Query: 13  PYIPRSSSSSASFKGCCCCLFLLFSFLALLILAVVLVVVLALKPKKPQFDLQQVGIQYMN 72
           P    SSSSSASFKGCCCCLFLLFSFLALL+LAVVLV+VLALKPKKPQFDLQQVG+QYM 
Sbjct: 55  PTTSSSSSSSASFKGCCCCLFLLFSFLALLVLAVVLVIVLALKPKKPQFDLQQVGVQYMG 114

Query: 73  ITTPN----------PTAASLSLDIRMIFTAVNPNKVGIKYGESRFTVMYRGIPLGRASI 132
           I +PN          PT+ASLSL+IRM+F+A NPNKVGIKYGESRFTVMYRGIPLG+ASI
Sbjct: 115 INSPNPTPTADPNQNPTSASLSLNIRMLFSAANPNKVGIKYGESRFTVMYRGIPLGKASI 174

Query: 133 PGFFQDPHSQRQVDATIAVDRVSLLQADAADLIRDASLNDRVELRILGDVAAKIRLLSFD 192
           PGF+QD H+ RQV ATIAVDRV+LLQADA DL+RDASLNDRVELR+LGDV AKIR+L+FD
Sbjct: 175 PGFYQDAHTVRQVVATIAVDRVNLLQADAXDLVRDASLNDRVELRVLGDVGAKIRVLNFD 234

Query: 193 SPGVQVPLISLRASFVRSPDGEGHGLNVTSCG 215
           SPGVQV   S+  + V SP      L+   CG
Sbjct: 235 SPGVQV---SVDCAIVISP--RKQSLSYKQCG 261

The following BLAST results are available for this feature:

BLAST of CmoCh19G004420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G004420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5H7_CUCSA	2.1e-82	82.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G223380 PE=4 SV=1	[more]
A0A061DZ99_THECC	2.5e-75	70.91	Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 OS...	[more]
A0A061DYB0_THECC	4.7e-74	76.68	Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 2 (F...	[more]
M5Y567_PRUPE	6.1e-74	71.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010161mg PE=4 SV=1	[more]
W9RV36_9ROSA	4.0e-73	77.37	Uncharacterized protein OS=Morus notabilis GN=L484_024155 PE=4 SV=1	[more]

BLAST of CmoCh19G004420 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01080.1	5.6e-71	72.73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CmoCh19G004420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092733\|ref\|XP_008447190.1\|	5.5e-84	91.71	PREDICTED: uncharacterized protein LOC103489700 isoform X1 [Cucumis melo]	[more]
gi\|659092735\|ref\|XP_008447191.1\|	1.2e-83	83.74	PREDICTED: uncharacterized protein LOC103489700 isoform X2 [Cucumis melo]	[more]
gi\|449444084\|ref\|XP_004139805.1\|	3.0e-82	82.76	PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus]	[more]
gi\|590683364\|ref\|XP_007041580.1\|	3.6e-75	70.91	Late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1 [T...	[more]
gi\|658008149\|ref\|XP_008339262.1\|	6.7e-74	73.11	PREDICTED: uncharacterized protein LOC103402303 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004420.1	CmoCh19G004420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 94..176 score: 1.1
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 9..188 score: 8.1E
None	No IPR available	PANTHER	PTHR31234:SF8	EXPRESSED PROTEIN	coord: 9..188 score: 8.1E
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 40..172 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G004420	CmaCh19G004350	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004420	Cp4.1LG15g03300	Cucurbita pepo (Zucchini)	cmocpeB481

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004420	Bottle gourd (USVL1VR-Ls)	cmolsiB472
CmoCh19G004420	Cucumber (Gy14) v2	cgybcmoB356
CmoCh19G004420	Melon (DHL92) v3.6.1	cmomedB530
CmoCh19G004420	Cucumber (Chinese Long) v3	cmocucB0607
CmoCh19G004420	Cucumber (Gy14) v1	cgycmoB0868
CmoCh19G004420	Cucumber (Chinese Long) v2	cmocuB507
CmoCh19G004420	Melon (DHL92) v3.5.1	cmomeB459