CmoCh19G004360 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G004360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
LocationCmo_Chr19 : 5298415 .. 5301195 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACGATGAGGCAATAGAAGACTTTTCCATGAAGTTGACGACGACCTTTAGCAGCATCTGTTCACTAGGCGACGTTGTGGAGGAGATTTGCATTGTCAAGAAGTTTCTCCGAGCTATTACCCCAAGATTCATGCAGATTGTCACCTCCATCGAGCAGTTCTGCAACCTAATAAACATGTTGATTGAGGAGATCATTGTTCGTCTTAAGGTTCATGAGGAGAGACTTCGTGGCTACGAAGACAAAGAGGAGGAGAAAAACCTCTCACTCACACATGAGGAGTGGGTCGCATGGACGAAAAAGAAAGATGCAAATGACTCTTCTTTTTCAGGTATGAGCAGACATGGCAGCCATAACAAAGAAAAAAGAGGTCATGGACGTGGCCGCAGAGATGGAGGCAAAGGAGGTCGTGACAATATCTCACAAACCCATTAAAATGTCAACCCTTGGAAGGACAAGAGTATGATCAAGTGTTAATCTTGTAGAAAATATGGGCATTATGCAGTAGTGTGCCACAACAAGGAGAGTGATGAGGAGGCAAATCTTATCTTCTCAGATGATGAAGAGCCCACATTGATGTTGGTTGAGAAAATGCCCAACATGTTGATGCTCAATGAGGAGAAGGTTATGATGAACGATGTAACGATCAGAGTTTCTAGAATAAAATAAAATAAAATAAAAATAAAATAAATAATTAAATGTAATCTCTTCAGAAATCGAGAGATTTCCTGTGAGACTTTTATTGCCTAATAGAAACATTCCTATTGCTCTAAGTTTTCTTATCCTAAAACCCTAGAAAAAATCCTAGAATGCCTTATTGGGAAATGTCTTAAGATTATTTTTATATTTCTATGCCCAACCTTTTACATCCCTTGAAAACGATTCTCTCCAAACTTTCCTTCGGAACGTTGGGTTACTCTTCGGAGGAAGAATTGAGTGGAAGTAAGGTATTGATGTCGGGATCATTGTGTCAAAGAAGGTTGACCGTCGAAAATCGGTGTTCAAGACGTTGTGGGATCGTCGGTGCGTCGCCGGAATCGGGGAGGTGGAAATTAGGGTTTCGACTTGTCGGGTAAGGAAGGCGAGGTTTTTGGAATCGGGTCGAGCCGCAGATGGACGCTCAACAGCTCCAGCTGCTTCGCACACGTACACAGTGCGCCTCGCCTCGCATGTGTATGAAATCGGTTCGGTTCCGTCAATTCTCGCAACTCGACTTGGCGGCTTAGTTGGTCGGCTCGGTAGCTCGGCTTGGCAGCTTTGGTATCACTGTATTATATCGATTCCAAGGTTTTCGGTCCTTCCGAAGCCGTTTATGCCCTTAGTTTTACCATCCGAGGTCAGTATAGTTCCTAACTATCAAAGACAGATTGTATTGGGAGTTTATTTTGATAAATAGCATGAGATTAGCTAGGGTATGTTATGAAACGTCCCTAAGTTTTTTTTGTGGTTATTATAGGACGTATTTAACCGTTGGGATTAGCTCGTTGTGAGTGACTTCAACCAAAGCCATCGAGGTAAGTGACCTTACTGTTGGAGTTAGTTTACCACGTGTTGTATGATGGTGCGTGCCCTGTGGCCCCTGCATGCACCATGTTTTATTATGTGATATGACTATATGATTTATGAATTATGTAACTATTTATGCTATGAAACGTAATGGGTTATATTGACTGTTGACTGTTTATGCGATATGTTAGTAATATATGCCATGAAAATGTTGATCGATGCCTTGGATACATGTAGTATTATCAAGTCATGTCATGAGGTGTTTATGCAACTGGAATGTATTTTCATGTTATGTAATATGTCATGTAATGTAAGTCATGTGAGATGCCATGTAATGTAAGAAACGTATATGCGATGTTAGCACTGCTTATGTAATGCCATGTTAGATATGTTAAGGGACCTCATGCATATATGTATGTCACGTGCATCGGGATTCTTCCCCTTTATGATACGAAAGAATGAATTACAATATTTATGTTCGCTATGATGTCATGCGGGCCCTTTTCTGTTATGTGGTGTCCGGCGACGTGTAACACGTTGTGCCCGACCAAGCTAGGCCCAGGGGGTATGTATACGAGGCCGCCTGGTGAGTTCATGTACGTGTACATGTGCCGTGTGTGAAGGAGTACCACACACCCAACCCTACCTGGAATAGGAAAGCGCCCAAGACTATGTAAAGTTTATGAAAAGTTAGGTCTCACTCATATGTTGCATGTGTTTGCATTCCTAACCCCAACAGTGCGGTGACTTACTAAGTATTTTGTAAAATACTCAAGCCACGTGCTATCTACATTTTTCAGGTAAAGGCAAGGCGCCAATGTATGGTTGACGGCGGAGCTGGGGCCACCATGGAAGTTGGAGATGGGATATTTTTAGGAGTTTACTTCTATTTGACTGTTTTAAGTTATAACATTGAGTATTGTATTGGATTTATTTTGAATTCAATTATTGAAGGATTATTTTCCGAGATAGGGTTGTTTTGAATTTATGAATCTTTATGAAAGACTCTGTTAGTGTTTTTCCAAAGTTATTTACTATGAGCTTCCACATAATGAATTATGTATGCATAGGTGATGTCACTAATTAGGTTTAGAAAATTAGGGGTGTTACAAACTCCTTCATAGATGGAGAAGACCAAGTGGAGAGCAGCATTGGTACCTAGACAACGGAGCAAGTAACCACATGACCGGAGATCGAGAAAAGTTTAAGGACCTCTATGAGAAGTTCACTGAAAACGTGAACCTTTGCGACAGATCAATTGTACCGATCTAA

mRNA sequence

ATGAAGGACGATGAGGCAATAGAAGACTTTTCCATGAAGTTGACGACGACCTTTAGCAGCATCTGTTCACTAGGCGACGTTGTGGAGGAGATTTGCATTGTCAAGAAGTTTCTCCGAGCTATTACCCCAAGATTCATGCAGATTGTCACCTCCATCGAGCAGTTCTGCAACCTAATAAACATGTTGATTGAGGAGATCATTGTTCGTCTTAAGGTTCATGAGGAGAGACTTCGTGGCTACGAAGACAAAGAGGAGGAGAAAAACCTCTCACTCACACATGAGGAGTGGGTCGCATGGACGAAAAAGAAAGATGCAAATGACTCTTCTTTTTCAGGTATGAGCAGACATGGCAGCCATAACAAAGAAAAAAGAGGTCATGGACGTGGCCGCAGAGATGGAGGCAAAGGAGTAGTGTGCCACAACAAGGAGAGTGATGAGGAGGCAAATCTTATCTTCTCAGATGATGAAGAGCCCACATTGATGTTGGTTGAGAAAATGCCCAACATGTTGATGCTCAATGAGGAGAAGGTTGACCGTCGAAAATCGGTGTTCAAGACGTTGTGGGATCGTCGGTGCGTCGCCGGAATCGGGGAGGTGGAAATTAGGGTTTCGACTTGTCGGGTAAGGAAGGCGAGGTTTTTGGAATCGGGTCGAGCCGCAGATGGACGCTCAACAGCTCCAGCTGCTTCGCACACGTACACAGTGCGCCTCGCCTCGCATGTGTATGAAATCGGTTCGGTTCCGTCAATTCTCGCAACTCGACTTGGCGGCTTAGTTGGTCGGCTCGGTAGCTCGGCTTGGCAGCTTTGATGGAGAAGACCAAGTGGAGAGCAGCATTGGTACCTAGACAACGGAGCAAGTAACCACATGACCGGAGATCGAGAAAAGTTTAAGGACCTCTATGAGAAGTTCACTGAAAACGTGAACCTTTGCGACAGATCAATTGTACCGATCTAA

Coding sequence (CDS)

ATGAAGGACGATGAGGCAATAGAAGACTTTTCCATGAAGTTGACGACGACCTTTAGCAGCATCTGTTCACTAGGCGACGTTGTGGAGGAGATTTGCATTGTCAAGAAGTTTCTCCGAGCTATTACCCCAAGATTCATGCAGATTGTCACCTCCATCGAGCAGTTCTGCAACCTAATAAACATGTTGATTGAGGAGATCATTGTTCGTCTTAAGGTTCATGAGGAGAGACTTCGTGGCTACGAAGACAAAGAGGAGGAGAAAAACCTCTCACTCACACATGAGGAGTGGGTCGCATGGACGAAAAAGAAAGATGCAAATGACTCTTCTTTTTCAGGTATGAGCAGACATGGCAGCCATAACAAAGAAAAAAGAGGTCATGGACGTGGCCGCAGAGATGGAGGCAAAGGAGTAGTGTGCCACAACAAGGAGAGTGATGAGGAGGCAAATCTTATCTTCTCAGATGATGAAGAGCCCACATTGATGTTGGTTGAGAAAATGCCCAACATGTTGATGCTCAATGAGGAGAAGGTTGACCGTCGAAAATCGGTGTTCAAGACGTTGTGGGATCGTCGGTGCGTCGCCGGAATCGGGGAGGTGGAAATTAGGGTTTCGACTTGTCGGGTAAGGAAGGCGAGGTTTTTGGAATCGGGTCGAGCCGCAGATGGACGCTCAACAGCTCCAGCTGCTTCGCACACGTACACAGTGCGCCTCGCCTCGCATGTGTATGAAATCGGTTCGGTTCCGTCAATTCTCGCAACTCGACTTGGCGGCTTAGTTGGTCGGCTCGGTAGCTCGGCTTGGCAGCTTTGA
Homology
[Close]
BLAST of CmoCh19G004360 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 65/165 (39.39%), Postives = 101/165 (61.21%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           MK+ E+I+DF+MKLT+  S I +LG+ V+E  +VKK LR +  +F+Q+V++IEQF +   
Sbjct: 118 MKEGESIDDFAMKLTSIISKIRALGEKVDEAYVVKKLLRVMPQKFLQVVSTIEQFGDFKT 177

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSGMSRHGSHN 120
           M +EE+I RLK +EER+  Y + E E +L LT  EW A   K    +  F   ++   +N
Sbjct: 178 MTMEEVIGRLKAYEERICVYANNEGE-HLLLTRAEWRAKEAKGGKRNRKFD-KAKEKCYN 237

Query: 121 KEKRGHGRGRRDGGKGVVCHNKESDEEANLI-FSDDEEPTLMLVE 165
            +K GH            CH ++ +E+A ++  S+DEEPTL++ E
Sbjct: 238 CQKYGH--------YSYECHPEQKEEKAYIVDKSEDEEPTLLMAE 272

[Close]
BLAST of CmoCh19G004360 vs. TrEMBL
Match: W5G1G9_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.8e-14
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           MK+ E+++DF+++LTT  + I +LG+ +EE   VKKFLRA+  +++QI ++IEQF +L  
Sbjct: 647 MKETESVDDFAVRLTTVVNKIHALGEHIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNT 706

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVA 99
           M ++E+I RLKVHEERL G     E++N  LT  EW+A
Sbjct: 707 MTLQEVIGRLKVHEERL-GRLGATEKENELLTRAEWIA 743

[Close]
BLAST of CmoCh19G004360 vs. TrEMBL
Match: T1NBQ9_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-14
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           MK+ E+++DF+++LTT  + I +LG+ +EE   VKKFLRA+  +++QI ++IEQF +L  
Sbjct: 641 MKETESVDDFAVRLTTVVNMIHALGEHIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNT 700

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVA 99
           M ++E+I RLKVHEERL G     E++N  LT  EW+A
Sbjct: 701 MTLQEVIGRLKVHEERL-GRLGATEKENELLTRAEWIA 737

[Close]
BLAST of CmoCh19G004360 vs. TrEMBL
Match: M0V144_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.8e-14
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           MK+ E+++DF+++LTT  + I +LG+ +EE   VKKFLRA+  +++QI ++IEQF +L  
Sbjct: 121 MKETESVDDFAVRLTTVVNKIHALGEHIEEPYAVKKFLRAVPNKYLQIASTIEQFGDLNA 180

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVA 99
           M ++E+I RLKVHEERL G     E++N  LT  EW+A
Sbjct: 181 MTLQEVIGRLKVHEERL-GRLGAAEKENELLTRAEWIA 217

[Close]
BLAST of CmoCh19G004360 vs. TrEMBL
Match: W5FLN4_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.3e-14
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           MK+ E+ +DF+++LTT  + I +LG+ +EE   VKKFLRA+  +++QI ++IEQF +L  
Sbjct: 647 MKETESTDDFAVRLTTVVNKIHALGERIEEPYTVKKFLRAVPNKYLQIASTIEQFGDLNT 706

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVA 99
           M ++E+I RLKVHEERL G     E++N  LT  EW+A
Sbjct: 707 MTLQEVIGRLKVHEERL-GRLGAAEKENELLTRAEWIA 743

[Close]
BLAST of CmoCh19G004360 vs. NCBI nr
Match: gi|721687389|ref|XP_010239235.1| (PREDICTED: uncharacterized protein LOC104585033 [Brachypodium distachyon])

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 66/214 (30.84%), Postives = 118/214 (55.14%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           M +DEA++ F+ ++ T  + I  LG+ + EI +V++FLRA +P+++QIVTSIEQ  +L  
Sbjct: 125 MGEDEAVDAFAARVRTLVNGIRDLGETLSEISVVRRFLRAASPKYIQIVTSIEQCVDLKT 184

Query: 61  MLIEEIIVRLKVHEERLR-GYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSG------- 120
           + +E+++ R K H+ERLR  + D +++++L +T  +W A   +K  + SS SG       
Sbjct: 185 LTVEDLVGRYKAHDERLRMVFGDGKDDEHLMMTRAQWSAMAARKTGDSSSSSGRRDQAKG 244

Query: 121 ----MSRHGSHNKEKRGHGRGRRDGGKGVVCHN------------KESDEEANLIFSDDE 180
                ++      E++G    ++   K V CHN            K   E+A +   +D+
Sbjct: 245 GGRAQAKKAPQGTEEKGAAPKKKFDRKKVRCHNCGIYGHFKSECRKPQKEKAYMAREEDD 304

Query: 181 EPTLMLVEKMPNMLMLNEEKVDRRKSVFKTLWDR 191
           +P L++VE M  ++   +E+V   KS   TL ++
Sbjct: 305 DPALLMVE-MCELMEEGQEEVIEEKSESVTLVEK 337

[Close]
BLAST of CmoCh19G004360 vs. NCBI nr
Match: gi|721687640|ref|XP_010239308.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypodium distachyon])

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 66/215 (30.70%), Postives = 118/215 (54.88%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           M +DEA++ F+ ++TT  + I  LG+ + EI +V++FLR  +P+++QIVTSIEQ  +L  
Sbjct: 125 MGEDEAVDVFAARVTTLVNGIRDLGETLIEISVVRRFLRTASPKYIQIVTSIEQCVDLKT 184

Query: 61  MLIEEIIVRLKVHEERLR-GYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSG------- 120
           + +E+++   K H+ERLR  + D +++++L +T  +W A   +K  + SS SG       
Sbjct: 185 LTVEDLVGCYKAHDERLRMVFGDGKDDEHLMMTRAQWSAMAARKTGDSSSSSGRRDQAKG 244

Query: 121 ----MSRHGSHNKEKRGHGRGRRDGGKGVVCHN------------KESDEEANLIFSDDE 180
                ++      E++G    ++   K V CHN            K   E+A +   +D+
Sbjct: 245 EGRAQAKKAPQGTEEKGAAPKKKIDRKKVKCHNCGIYGHFKSECRKPQKEKAYMAREEDD 304

Query: 181 EPTLMLVEKMPNMLMLNEEKVDRRKSVFKTLWDRR 192
           +P L++VE M  ++   +EKV   KS   TL +++
Sbjct: 305 DPALLMVE-MCELMEKGQEKVIEEKSETVTLVEKK 338

[Close]
BLAST of CmoCh19G004360 vs. NCBI nr
Match: gi|721628281|ref|XP_010229716.1| (PREDICTED: uncharacterized protein LOC104582087 [Brachypodium distachyon])

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 65/215 (30.23%), Postives = 118/215 (54.88%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           M +DEA++ F+ ++ T  + I  LG+ + EI +V++FLRA +P+++QIVTSIEQ  +L  
Sbjct: 125 MGEDEAVDAFAARVRTLVNGIRDLGETLSEISVVRRFLRAASPKYIQIVTSIEQCVDLKT 184

Query: 61  MLIEEIIVRLKVHEERLR-GYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSG------- 120
           + +E+++ R K H+ERLR  + D +++++L +T  +W A   +K  + SS SG       
Sbjct: 185 LTVEDLVGRYKAHDERLRMVFGDGKDDEHLMMTRAQWSAMAARKTGDSSSSSGRRDQAKG 244

Query: 121 ----MSRHGSHNKEKRGHGRGRRDGGKGVVCHN------------KESDEEANLIFSDDE 180
                ++      E++     ++   K V CHN            K   E+A +   +D+
Sbjct: 245 GGRAQAKKAPQGTEEKAAAPKKKFDRKKVRCHNCGIYGHFKSECRKPQKEKAYMAREEDD 304

Query: 181 EPTLMLVEKMPNMLMLNEEKVDRRKSVFKTLWDRR 192
           +P L++VE M  ++   +E+V   KS   TL +++
Sbjct: 305 DPALLMVE-MCELMEEGQEEVIEEKSESVTLVEKK 338

[Close]
BLAST of CmoCh19G004360 vs. NCBI nr
Match: gi|721649220|ref|XP_010233064.1| (PREDICTED: uncharacterized protein LOC104583064 [Brachypodium distachyon])

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 61/188 (32.45%), Postives = 105/188 (55.85%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           M +DEA++ F+ ++TT  + I  LG+ + EI +V++FLRA +P+++QIVTSIEQ  +L  
Sbjct: 1   MGEDEAVDAFAARVTTLVNRIRDLGETLSEISVVRQFLRAASPKYIQIVTSIEQCVDLKT 60

Query: 61  MLIEEIIVRLKVHEERLR-GYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSG------- 120
           + +E+++ R K H+ERLR  + D +E+++L +T  +W A   +K  + SS SG       
Sbjct: 61  LTVEDLVGRYKAHDERLRMVFGDGKEDEHLMMTRAQWSAMAARKIGDSSSSSGRRDQAKG 120

Query: 121 ----MSRHGSHNKEKRGHGRGRRDGGKGVVCHN------------KESDEEANLIFSDDE 165
                ++      E++G    ++   K V CHN            K   E+A     +D+
Sbjct: 121 GGRAQAKKAPQGTEEKGAAPKKKFDRKKVRCHNCGIYGHFKSECRKPQKEKAYKAREEDD 180

[Close]
BLAST of CmoCh19G004360 vs. NCBI nr
Match: gi|802634548|ref|XP_012078055.1| (PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = 1 

Query: 1   MKDDEAIEDFSMKLTTTFSSICSLGDVVEEICIVKKFLRAITPRFMQIVTSIEQFCNLIN 60
           M D E ++DFS KLT   + + SLG+ VE+  +VKK LR+++ +F+QIV++IE+F +L  
Sbjct: 137 MSDSENVDDFSGKLTIIVNKLRSLGNTVEDEKVVKKLLRSVSSKFLQIVSTIEEFSDLST 196

Query: 61  MLIEEIIVRLKVHEERLRGYEDKEEEKNLSLTHEEWVAWTKKKDANDSSFSGMSRHGSHN 120
             +E++I  LK HEERL     K EE  L LT  EW A   K++A  ++ +     G   
Sbjct: 197 KSVEDVIGSLKAHEERLLSCGGKSEE-TLLLTRAEWKA---KEEAKKNNKASADTRGGRG 256

Query: 121 KEKRGHGRGR 131
           +E+ G GRG+
Sbjct: 257 RERGGRGRGK 262

The following BLAST results are available for this feature:
BLAST of CmoCh19G004360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G004360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9DE89_ARUDO4.2e-1839.39Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
W5G1G9_WHEAT2.8e-1447.96Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
T1NBQ9_TRIUA3.7e-1447.96Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
M0V144_HORVD4.8e-1447.96Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
W5FLN4_WHEAT8.3e-1447.96Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
BLAST of CmoCh19G004360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G004360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|721687389|ref|XP_010239235.1|1.1e-1630.84PREDICTED: uncharacterized protein LOC104585033 [Brachypodium distachyon][more]
gi|721687640|ref|XP_010239308.1|2.6e-1630.70PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypo... [more]
gi|721628281|ref|XP_010229716.1|4.4e-1630.23PREDICTED: uncharacterized protein LOC104582087 [Brachypodium distachyon][more]
gi|721649220|ref|XP_010233064.1|1.3e-1532.45PREDICTED: uncharacterized protein LOC104583064 [Brachypodium distachyon][more]
gi|802634548|ref|XP_012078055.1|9.1e-1440.77PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043167 ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G004360.1CmoCh19G004360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 63..83
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..164
score: 1.4
NoneNo IPR availablePANTHERPTHR11439:SF173SUBFAMILY NOT NAMEDcoord: 1..164
score: 1.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..78
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G004360Cucumber (Gy14) v1cgycmoB0868
CmoCh19G004360Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G004360Cucumber (Chinese Long) v2cmocuB507
CmoCh19G004360Melon (DHL92) v3.5.1cmomeB459
CmoCh19G004360Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G004360Bottle gourd (USVL1VR-Ls)cmolsiB472
CmoCh19G004360Cucumber (Gy14) v2cgybcmoB356
CmoCh19G004360Melon (DHL92) v3.6.1cmomedB530
CmoCh19G004360Silver-seed gourdcarcmoB0300
CmoCh19G004360Cucumber (Chinese Long) v3cmocucB0607