CmoCh19G004190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr19 : 5022681 .. 5023841 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCCAAATCGCCCCTCAGCAACAGCATCACCAAGGTATCATTCTGTACTTTTGTAGTTGATTGTTTTTGGCGTAGAAAAACAGGGAAAATGACATTTTGGTAGGTGTGGAAGGGGAAGAAGATGGGCAGCATCATGAGAAGCAGTCAGTGTTGAAGAAAGTGAAGGCTAAGGCTAAGAAGATTAAGGACAATATTACAAAGCATGGCGCCCATGACCATCCTCATGACTACGATGATGATGATGAAGAAGAAGATGATGAGGAGGTTCTTGAAGATTCTGGTATCTCTTTTCCCTTTTGGATGCTTAAAAAATAACTCAAATGGTTAGGAATCACGACCCTTCACAATGATATGGTATGATATTGTGTACGTTCAGCATGATCTCTCATGACTTTTCTGTGAGTCTCCGATCTTCCACTAAATTAGCCGACTCTCCCTAACCATTCTCCCCTCGAACAAAGTTTACCATAGAGCTTCTCCTAAGGTCTATGTAGCCCTCGAACAGCCTCCTTCCAATTGAGGCTCGACTCCTTTTTTTGGAGTCTTCGAACAAAGTACACCCTTTGTTCGACATATGAATCACTTTTGACTACATCTTTGAGGCTAGCAATTTCTTTCTTTGTTCGACGTTTGAGAATTCTATTGACATGACTAAATTAAGGATATGGTTCTGATACGTACCATGTTAGAAATCACAATCCTCCACAATAGTACGATATTGGTCTCGTACTAATGGAGAGAGTATTCCTATAAATCCATTATCTTCCACTAAATTCTTCACAATGGTACGATATTGGTCTCGTACTAATGGGGAGAATATTCCTATAAATCTAACAATGGTATGATAATGGTTCATACCCATGGAGAGAATATTCCTATAAACCCATCATCTTCCCCTAAATTAGCGAACGTGAGACTTTACCATGGTACGGTATTGGTCTCGTACTAATAAATCTAACAATGGTACGATATTGGTTCATATCCATGGAGAGAATATTCTTATAAACCCATATCTTCCCCTAAATTAGAGAACGTGAGACTGTATTGGTCTCGTACTCATGGAGAGAATATTCCTAGAAATCCAACAATGGTACGATATTGGTCGGAGGGAATATTTCTATAAACCCATCATCTTTCGCTAAAAAGATTAGCTAA

mRNA sequence

ATGGACTCCCAAATCGCCCCTCAGCAACAGCATCACCAAGGTGTGGAAGGGGAAGAAGATGGGCAGCATCATGAGAAGCAGTCAGTGTTGAAGAAAGTGAAGGCTAAGGCTAAGAAGATTAAGGACAATATTACAAAGCATGGCGCCCATGACCATCCTCATGACTACGATGATGATGATGAAGAAGAAGATGATGAGGAGATTAGCTAA

Coding sequence (CDS)

ATGGACTCCCAAATCGCCCCTCAGCAACAGCATCACCAAGGTGTGGAAGGGGAAGAAGATGGGCAGCATCATGAGAAGCAGTCAGTGTTGAAGAAAGTGAAGGCTAAGGCTAAGAAGATTAAGGACAATATTACAAAGCATGGCGCCCATGACCATCCTCATGACTACGATGATGATGATGAAGAAGAAGATGATGAGGAGATTAGCTAA

Homology

[Close]

BLAST of CmoCh19G004190 vs. TrEMBL
Match: A0A0B0MRR8_GOSAR (Low-temperature-induced 65 kDa-like protein OS=Gossypium arboreum GN=F383_28449 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 1  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG---AHDHPHDY- 60
          M++Q A   QH +G    ED QHHEK SVLKKVKAKAKKIKD I KHG    HDH H+Y 
Sbjct: 1  MNAQSAYPHQHGEG----EDDQHHEKNSVLKKVKAKAKKIKDTIKKHGHGHNHDHGHEYH 60

Query: 61 ------DDDDEEEDDEE 68
                D D +EEDDEE
Sbjct: 61 EGHIPDDHDLDEEDDEE 73

[Close]

BLAST of CmoCh19G004190 vs. TrEMBL
Match: A0A161WYT1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018199 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 1  MDSQIAPQQQHH--------------QGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITK 60
          M+SQ+     HH               GVEG  +  HHEK SVLKKVKAKAKKIK+ +TK
Sbjct: 1  MESQLPRTHGHHYEPTDLSTNPPALQSGVEGHSEA-HHEKPSVLKKVKAKAKKIKNTLTK 60

Query: 61 HG---AHDHPHDYDDDDEEEDDEEI 69
          HG    HDH HD+D+ +E+EDDE +
Sbjct: 61 HGHEHEHDHDHDHDEYEEDEDDEMV 84

[Close]

BLAST of CmoCh19G004190 vs. TrEMBL
Match: A0A0D2T867_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G277500 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 12  HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG---AHDHPHDY------------ 69
           HQ  EGE+D  HHEK SVLKKVKAKAKKIKD I KHG    HDH H+Y            
Sbjct: 56  HQHGEGEDD--HHEKNSVLKKVKAKAKKIKDTIKKHGHGHNHDHGHEYHEGHIPDDHDLD 115

[Close]

BLAST of CmoCh19G004190 vs. TrEMBL
Match: A0A059DJY8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02790 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-06
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 1  MDSQIAPQQQH-----------HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG- 60
          M+SQ+A    H           H   EG ++  HHEK+SVLKKVKAKAKK+KD ITKHG 
Sbjct: 1  MESQVAHPHGHGYGQDPNAVGLHSAGEGGDNEHHHEKKSVLKKVKAKAKKLKDTITKHGH 60

Query: 61 --AHDHPH-----DYDDDDEEEDDEEI 69
             HDHP      D+D D+E+++DEE+
Sbjct: 61 GDDHDHPEGHVPDDHDLDEEDDEDEEV 87

[Close]

BLAST of CmoCh19G004190 vs. TAIR10
Match: AT5G52300.1 (AT5G52300.1 CAP160 protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.4e-06
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 1  MDSQIAPQQQHHQGVEG-----EEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHP 60
          M+SQ+     H Q  E       E+ +HHEK    VLKKVK KAKKIK+++TKHG + H 
Sbjct: 1  MESQLTRPYGHEQAEEPIRIHHPEEEEHHEKGASKVLKKVKEKAKKIKNSLTKHG-NGHD 60

Query: 61 HDYDDDDEEEDDEE 68
          HD +DDD+E D+++
Sbjct: 61 HDVEDDDDEYDEQD 73

[Close]

BLAST of CmoCh19G004190 vs. NCBI nr
Match: gi|778689071|ref|XP_011652891.1| (PREDICTED: low-temperature-induced 65 kDa protein [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 1  MDSQIAPQQQHHQG---------VEGEE-----DGQHHEKQSVLKKVKAKAKKIKDNITK 60
          MDSQI P   HH           VEG+E     D +HHEK+SVLKKVKAKAKKIKD ITK
Sbjct: 1  MDSQIPPHHHHHHHHPLGLHQSHVEGKEELQEGDQEHHEKKSVLKKVKAKAKKIKDTITK 60

Query: 61 HGAHDHPHDYDDDDEEEDDEE 68
          HG   H HD+ D+++  DDEE
Sbjct: 61 HG---HGHDHHDEEDVSDDEE 78

[Close]

BLAST of CmoCh19G004190 vs. NCBI nr
Match: gi|728819872|gb|KHG03450.1| (Low-temperature-induced 65 kDa -like protein [Gossypium arboreum])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 1  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG---AHDHPHDY- 60
          M++Q A   QH +G    ED QHHEK SVLKKVKAKAKKIKD I KHG    HDH H+Y 
Sbjct: 1  MNAQSAYPHQHGEG----EDDQHHEKNSVLKKVKAKAKKIKDTIKKHGHGHNHDHGHEYH 60

Query: 61 ------DDDDEEEDDEE 68
                D D +EEDDEE
Sbjct: 61 EGHIPDDHDLDEEDDEE 73

[Close]

BLAST of CmoCh19G004190 vs. NCBI nr
Match: gi|1021037174|gb|KZM94957.1| (hypothetical protein DCAR_018199 [Daucus carota subsp. sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 1  MDSQIAPQQQHH--------------QGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITK 60
          M+SQ+     HH               GVEG  +  HHEK SVLKKVKAKAKKIK+ +TK
Sbjct: 1  MESQLPRTHGHHYEPTDLSTNPPALQSGVEGHSEA-HHEKPSVLKKVKAKAKKIKNTLTK 60

Query: 61 HG---AHDHPHDYDDDDEEEDDEEI 69
          HG    HDH HD+D+ +E+EDDE +
Sbjct: 61 HGHEHEHDHDHDHDEYEEDEDDEMV 84

[Close]

BLAST of CmoCh19G004190 vs. NCBI nr
Match: gi|823214818|ref|XP_012440168.1| (PREDICTED: low-temperature-induced 65 kDa protein-like [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 12 HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG---AHDHPHDY------------ 69
          HQ  EGE+D  HHEK SVLKKVKAKAKKIKD I KHG    HDH H+Y            
Sbjct: 9  HQHGEGEDD--HHEKNSVLKKVKAKAKKIKDTIKKHGHGHNHDHGHEYHEGHIPDDHDLD 68

[Close]

BLAST of CmoCh19G004190 vs. NCBI nr
Match: gi|763785723|gb|KJB52794.1| (hypothetical protein B456_008G277500 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 12  HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG---AHDHPHDY------------ 69
           HQ  EGE+D  HHEK SVLKKVKAKAKKIKD I KHG    HDH H+Y            
Sbjct: 56  HQHGEGEDD--HHEKNSVLKKVKAKAKKIKDTIKKHGHGHNHDHGHEYHEGHIPDDHDLD 115

The following BLAST results are available for this feature:

BLAST of CmoCh19G004190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G004190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0MRR8_GOSAR	1.2e-06	58.44	Low-temperature-induced 65 kDa-like protein OS=Gossypium arboreum GN=F383_28449 ...	[more]
A0A161WYT1_DAUCA	1.6e-06	49.41	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018199 PE=4 SV=1	[more]
A0A0D2T867_GOSRA	1.6e-06	58.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G277500 PE=4 SV=1	[more]
A0A059DJY8_EUCGR	3.6e-06	48.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02790 PE=4 SV=1	[more]

BLAST of CmoCh19G004190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52300.1	9.4e-06	47.30	CAP160 protein	[more]

BLAST of CmoCh19G004190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689071\|ref\|XP_011652891.1\|	2.1e-07	55.56	PREDICTED: low-temperature-induced 65 kDa protein [Cucumis sativus]	[more]
gi\|728819872\|gb\|KHG03450.1\|	1.8e-06	58.44	Low-temperature-induced 65 kDa -like protein [Gossypium arboreum]	[more]
gi\|1021037174\|gb\|KZM94957.1\|	2.3e-06	49.41	hypothetical protein DCAR_018199 [Daucus carota subsp. sativus]	[more]
gi\|823214818\|ref\|XP_012440168.1\|	2.3e-06	58.33	PREDICTED: low-temperature-induced 65 kDa protein-like [Gossypium raimondii]	[more]
gi\|763785723\|gb\|KJB52794.1\|	2.3e-06	58.33	hypothetical protein B456_008G277500 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004190.1	CmoCh19G004190.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004190	Cucumber (Chinese Long) v3	cmocucB0600
CmoCh19G004190	Cucumber (Chinese Long) v3	cmocucB0607
CmoCh19G004190	Watermelon (97103) v2	cmowmbB530
CmoCh19G004190	Wax gourd	cmowgoB0645
CmoCh19G004190	Cucurbita moschata (Rifu)	cmocmoB392
CmoCh19G004190	Cucumber (Gy14) v1	cgycmoB0867
CmoCh19G004190	Cucumber (Gy14) v1	cgycmoB0868
CmoCh19G004190	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004190	Cucurbita maxima (Rimu)	cmacmoB603
CmoCh19G004190	Wild cucumber (PI 183967)	cmocpiB508
CmoCh19G004190	Cucumber (Chinese Long) v2	cmocuB502
CmoCh19G004190	Cucumber (Chinese Long) v2	cmocuB507
CmoCh19G004190	Melon (DHL92) v3.5.1	cmomeB459
CmoCh19G004190	Melon (DHL92) v3.5.1	cmomeB463
CmoCh19G004190	Watermelon (Charleston Gray)	cmowcgB439
CmoCh19G004190	Watermelon (97103) v1	cmowmB465
CmoCh19G004190	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G004190	Cucurbita pepo (Zucchini)	cmocpeB503
CmoCh19G004190	Bottle gourd (USVL1VR-Ls)	cmolsiB475
CmoCh19G004190	Cucumber (Gy14) v2	cgybcmoB350
CmoCh19G004190	Cucumber (Gy14) v2	cgybcmoB356
CmoCh19G004190	Melon (DHL92) v3.6.1	cmomedB530
CmoCh19G004190	Melon (DHL92) v3.6.1	cmomedB534
CmoCh19G004190	Silver-seed gourd	carcmoB0300
CmoCh19G004190	Silver-seed gourd	carcmoB0969