CmoCh19G004020 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ankyrin repeat protein
Location	Cmo_Chr19 : 4710159 .. 4711485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGAAACCATCCTTAGCCAAGAAGCTTAACCCAGAGGGCTATACCCCTATCCACTTGGCATTGCAAAATAACCAAACGAAAACCGTGCTGCGACTCGTCGATATCGATCGAGATCTCGTAAGCATACAAGGGAGAGAGGGCTTAACTCCATTGCACATTGCAGCTTTGGGAGGCATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATGGTAATGAGTTCTGCTCTACATATTGCGGTTAAAAGTGAAGATATTGAATCGGTTAAAACCTTGCTAGAATGGATCCAACAAACTTGCATGGCCTCAATACTTGATTGGTGTAATGACGAAGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACCAAATTGAGGTCAGTATTAGAGGTTGTTTTTAACCCTTTGTGTATGACCATATGAAGAAAAGCATGTCTTTGGTGCAGATGGAAGAAAGAGGAAATCAAGCTTAATCAGAGTTTACAAGCCAGGGGAATGAGGTCAGGGAATACACGCAGCCGAGACTTGAATTTAAAGTCCAGTTAGATTTGACGATCTAATACGGGAAGTTGATGTTGATGTTGTTGGGTGCCCCTTGCGAGGAAAAGAAGTTCACGACCCGTAGGCCTCCCGGTATTTAGAGCTGTTTTCCTTTCTTTCCCTTATTTCTGGAGGTAACATAGGCTGGATGGATGAGAAGAGGGTCAAGCTCCGGAATAGGAGAGTTCAGACTCAAGCTCCTACTGATTGAACAAGGAAGGTAAACTGGAGAGAGGGTCAAGCTCATTCACCTATCGGTCAGGTAATATCGGGGCAGAGGAAGGGTCAGGATCAAGAATCCATCAACCAGAATTTTCCAAAGCTTTTCATGAACTTAGTGGATATCAAAGCAAAGAATTTTTGGAAGGCAAGACAGTAGAAGACATAATGAAAGAACATGGTCGTGTGGAAGACAAAGAGGTAAAAGAGTCATTACATGTCTAAAGAGGATCGGAATGCCATATTTCAATACTCTGGTATTTGTTGCTTTAATGATAGAGATTTGTGTTCATCTTCCTTATGGGATTGGCTATGCTCTCCATTTGGTTCTCCCTTTGGTGATTTGCTATACATTTTGCAATGATTTTTGGGCTTACTTGGTCCAAAATTAAATTGGGTTGATTGGACAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACTTGGTGGTCTCTTCATGCGCACCATTAGCATGGAGAAAGAATTGACTCTAACAAGTGTGAACTTTGGTCACAATGTTAGAGCTTAA

mRNA sequence

ATGAAGTTGAAACCATCCTTAGCCAAGAAGCTTAACCCAGAGGGCTATACCCCTATCCACTTGGCATTGCAAAATAACCAAACGAAAACCGTGCTGCGACTCGTCGATATCGATCGAGATCTCGTAAGCATACAAGGGAGAGAGGGCTTAACTCCATTGCACATTGCAGCTTTGGGAGGCATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACCAAATTGAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACTTGGTGGTCTCTTCATGCGCACCATTAGCATGGAGAAAGAATTGACTCTAACAAGTGTGAACTTTGGTCACAATGTTAGAGCTTAA

Coding sequence (CDS)

ATGAAGTTGAAACCATCCTTAGCCAAGAAGCTTAACCCAGAGGGCTATACCCCTATCCACTTGGCATTGCAAAATAACCAAACGAAAACCGTGCTGCGACTCGTCGATATCGATCGAGATCTCGTAAGCATACAAGGGAGAGAGGGCTTAACTCCATTGCACATTGCAGCTTTGGGAGGCATGGTTGATATATTGGCAAAGTTTCTAACTTCATGCCCAAAATCAATTAAAGAATTGACCAATGGAAACAATGCCATGCATCTTGCGGCCCTTGGAAACCAAATTGAGAAAATGAAGGGAGATCTTCCGCTAAAGAAGCTTAGGAAACTTGGTGGTCTCTTCATGCGCACCATTAGCATGGAGAAAGAATTGACTCTAACAAGTGTGAACTTTGGTCACAATGTTAGAGCTTAA

Homology

[Close]

BLAST of CmoCh19G004020 vs. Swiss-Prot
Match: ANK2_MOUSE (Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-06
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 7   LAKKLNPE-----GYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGGM 66
           L K+ NP      G+TP+H+A + N+ K +  LV     + +I    GLTP+H+AA  G 
Sbjct: 385 LDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAIT-ESGLTPIHVAAFMGH 444

Query: 67  VDILAKFLTSCPKSIKELTNGNNAMHLAALGNQIEKMK 100
           ++I+   L +          G  A+H+AA   Q+E ++
Sbjct: 445 LNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVR 481

[Close]

BLAST of CmoCh19G004020 vs. Swiss-Prot
Match: ANK2_HUMAN (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4)

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-06
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 7   LAKKLNPE-----GYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGGM 66
           L K+ NP      G+TP+H+A + N+ K +  LV     + +I    GLTP+H+AA  G 
Sbjct: 385 LDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAIT-ESGLTPIHVAAFMGH 444

Query: 67  VDILAKFLTSCPKSIKELTNGNNAMHLAALGNQIEKMK 100
           ++I+   L +          G  A+H+AA   Q+E ++
Sbjct: 445 LNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVR 481

[Close]

BLAST of CmoCh19G004020 vs. Swiss-Prot
Match: ANK3_HUMAN (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 31/101 (30.69%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 4   KPSLAKKLNPE-----GYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAAL 63
           K  L KK NP      G+TP+H+A + N+ K +  L+     + ++    GLTP+H+AA 
Sbjct: 384 KVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVT-ESGLTPIHVAAF 443

Query: 64  GGMVDILAKFLTSCPKSIKELTNGNNAMHLAALGNQIEKMK 100
            G V+I+++ +            G  A+H+AA   Q E ++
Sbjct: 444 MGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVR 483

[Close]

BLAST of CmoCh19G004020 vs. Swiss-Prot
Match: ANK3_RAT (Ankyrin-3 OS=Rattus norvegicus GN=Ank3 PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-06
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 4   KPSLAKKLNPE-----GYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAAL 63
           K  L KK NP      G+TP+H+A + N+ + +  L+     + ++    GLTP+H+AA 
Sbjct: 392 KVLLDKKANPNAKALNGFTPLHIACKKNRIRVMELLLKHGASIQAVT-ESGLTPIHVAAF 451

Query: 64  GGMVDILAKFLTSCPKSIKELTNGNNAMHLAALGNQIEKMK 100
            G V+I+++ +            G  A+H+AA   Q E ++
Sbjct: 452 MGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVR 491

[Close]

BLAST of CmoCh19G004020 vs. TrEMBL
Match: V4U0P0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023468mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-24
Identity = 52/97 (53.61%), Postives = 78/97 (80.41%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   N +E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNNNVE 149

[Close]

BLAST of CmoCh19G004020 vs. TrEMBL
Match: V4T633_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024160mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 EIHLLREFLSTCPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. TrEMBL
Match: V4U0P5_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023439mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDLDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. TrEMBL
Match: V4TVG4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024221mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. TrEMBL
Match: V4VRP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023280mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-23
Identity = 51/97 (52.58%), Postives = 78/97 (80.41%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT  VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 24  IRLKPSFARKLNQDGFSPVHLALQNDQTHLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 83

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 84  DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 120

[Close]

BLAST of CmoCh19G004020 vs. TAIR10
Match: AT5G54620.1 (AT5G54620.1 Ankyrin repeat family protein)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           M LKP+ AKKLN +G +P+HLA++N+Q +  L LV I+ DLV + GR+G+TPLH+    G
Sbjct: 57  MVLKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKG 116

Query: 61  MVDILAKFLTSCPKSIKEL-TNGNNAMHLAALGNQIEKMK 100
             ++L +FL +CP+SIK+   NG  A+H+A + ++ E++K
Sbjct: 117 DANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELK 156

[Close]

BLAST of CmoCh19G004020 vs. TAIR10
Match: AT5G54610.1 (AT5G54610.1 ankyrin)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           M LKPS AKKLN  G +P+HLA++N+Q +  L LV +D  LV I+GR G+TPLH+ A  G
Sbjct: 57  MILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKG 116

Query: 61  MVDILAKFLTSCPKSIKEL-TNGNNAMHLAALGNQIEKMK 100
            VD+L  FL +CP+SIK++  NG   +H+  + ++ E++K
Sbjct: 117 DVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLK 156

[Close]

BLAST of CmoCh19G004020 vs. TAIR10
Match: AT4G10720.1 (AT4G10720.1 Ankyrin repeat family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           M LKPS A+KLN  G +P+HLA++  QT+ VL L+ +D DLV ++GREG+TP H     G
Sbjct: 57  MNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRG 116

Query: 61  MVDILAKFLTSCPKSIKEL-TNGNNAMHLAALGNQIEKMK 100
             D++ +FL +CP  IK+   NG  A+H+A   ++ E+++
Sbjct: 117 ETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELE 156

[Close]

BLAST of CmoCh19G004020 vs. TAIR10
Match: AT5G15500.2 (AT5G15500.2 Ankyrin repeat family protein)

HSP 1 Score: 90.5 bits (223), Expect = 8.6e-19
Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           M LKPS A+KLN +G TP+HLA+++     VL +V +D  LV I+GR G+TPL +A    
Sbjct: 58  MNLKPSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRK 117

Query: 61  MVDILAKFLTSCPKSIKEL-TNGNNAMHLAALGNQIEKMKGDLPLKKLRKLGGLFMRTIS 120
            +D++++F   CP+SI +   NG NA+H+A   N  ++ +G   L  L+ L G  +R   
Sbjct: 118 KIDLMSEFFLGCPESIVDANVNGENALHIAV--NNYDQREG---LSVLKVLMGWILRLCQ 177

Query: 121 MEKELTLTSV 130
            + E   T V
Sbjct: 178 KDAEWIETRV 182

[Close]

BLAST of CmoCh19G004020 vs. TAIR10
Match: AT1G14500.1 (AT1G14500.1 Ankyrin repeat family protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 41/97 (42.27%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           + LKPS A+KLN  GY+P+HLA++ +  + +  L+  D  LV ++GREG+TP H+ A+ G
Sbjct: 57  LNLKPSFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRG 116

Query: 61  MVDILAKFLTSCPKSIKELT-NGNNAMHLAALGNQIE 97
            V+++A+ L  CP  I++++ NG+NA+HLA + ++ E
Sbjct: 117 DVNLVAECLKYCPVCIQDVSVNGHNALHLAVMNDRFE 153

[Close]

BLAST of CmoCh19G004020 vs. NCBI nr
Match: gi|567899936|ref|XP_006442456.1| (hypothetical protein CICLE_v10023468mg, partial [Citrus clementina])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 52/97 (53.61%), Postives = 78/97 (80.41%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   N +E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNNNVE 149

[Close]

BLAST of CmoCh19G004020 vs. NCBI nr
Match: gi|567899930|ref|XP_006442453.1| (hypothetical protein CICLE_v10024160mg [Citrus clementina])

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 EIHLLREFLSTCPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. NCBI nr
Match: gi|567899946|ref|XP_006442461.1| (hypothetical protein CICLE_v10023439mg, partial [Citrus clementina])

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDLDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. NCBI nr
Match: gi|567899924|ref|XP_006442450.1| (hypothetical protein CICLE_v10024221mg [Citrus clementina])

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 149

[Close]

BLAST of CmoCh19G004020 vs. NCBI nr
Match: gi|568883915|ref|XP_006494686.1| (PREDICTED: ankyrin repeat-containing protein At2g01680-like [Citrus sinensis])

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 51/97 (52.58%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1   MKLKPSLAKKLNPEGYTPIHLALQNNQTKTVLRLVDIDRDLVSIQGREGLTPLHIAALGG 60
           ++LKPS A+KLN +G++P+HLALQN+QT+ VL+L+DID DLV +QGREG+TPLH  +  G
Sbjct: 53  IRLKPSFARKLNQDGFSPVHLALQNDQTQLVLQLIDIDPDLVRVQGREGITPLHFVSEKG 112

Query: 61  MVDILAKFLTSCPKSIKELTN-GNNAMHLAALGNQIE 97
            + +L +FL++CPKS++++TN G  A+H+A   +++E
Sbjct: 113 DIHLLREFLSACPKSLEDVTNKGETALHIALKNDKVE 149

The following BLAST results are available for this feature:

BLAST of CmoCh19G004020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ANK2_MOUSE	2.1e-06	31.63	Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2	[more]
ANK2_HUMAN	2.1e-06	31.63	Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4	[more]
ANK3_HUMAN	2.7e-06	30.69	Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3	[more]
ANK3_RAT	6.0e-06	29.70	Ankyrin-3 OS=Rattus norvegicus GN=Ank3 PE=1 SV=3	[more]

BLAST of CmoCh19G004020 vs. TrEMBL


Match Name	E-value	Identity	Description
V4U0P0_9ROSI	7.6e-24	53.61	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023468mg PE=...	[more]
V4T633_9ROSI	1.7e-23	52.58	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024160mg PE=4 SV=1	[more]
V4U0P5_9ROSI	2.2e-23	52.58	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023439mg PE=...	[more]
V4TVG4_9ROSI	2.2e-23	52.58	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024221mg PE=4 SV=1	[more]
V4VRP0_9ROSI	3.8e-23	52.58	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023280mg PE=...	[more]

BLAST of CmoCh19G004020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54620.1	4.9e-22	46.00	Ankyrin repeat family protein	[more]
AT5G54610.1	4.9e-22	48.00	ankyrin	[more]
AT4G10720.1	1.2e-20	44.00	Ankyrin repeat family protein	[more]
AT5G15500.2	8.6e-19	39.23	Ankyrin repeat family protein	[more]
AT1G14500.1	1.5e-18	42.27	Ankyrin repeat family protein	[more]

BLAST of CmoCh19G004020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567899936\|ref\|XP_006442456.1\|	1.1e-23	53.61	hypothetical protein CICLE_v10023468mg, partial [Citrus clementina]	[more]
gi\|567899930\|ref\|XP_006442453.1\|	2.4e-23	52.58	hypothetical protein CICLE_v10024160mg [Citrus clementina]	[more]
gi\|567899946\|ref\|XP_006442461.1\|	3.2e-23	52.58	hypothetical protein CICLE_v10023439mg, partial [Citrus clementina]	[more]
gi\|567899924\|ref\|XP_006442450.1\|	3.2e-23	52.58	hypothetical protein CICLE_v10024221mg [Citrus clementina]	[more]
gi\|568883915\|ref\|XP_006494686.1\|	3.2e-23	52.58	PREDICTED: ankyrin repeat-containing protein At2g01680-like [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004020.1	CmoCh19G004020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	PFAM	PF00023	Ank	coord: 49..65 score: 0
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 48..78 score: 0.36coord: 14..43 score:
IPR002110	Ankyrin repeat	PROFILE	PS50088	ANK_REPEAT	coord: 48..69 score:
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 12..96 score: 1.4
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 14..99 score:
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 9..96 score: 6.37
None	No IPR available	PANTHER	PTHR24128	FAMILY NOT NAMED	coord: 1..99 score: 9.1
None	No IPR available	PANTHER	PTHR24128:SF24	ANKYRIN REPEAT FAMILY PROTEIN-RELATED	coord: 1..99 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004020	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G004020	Cucurbita pepo (Zucchini)	cmocpeB501
CmoCh19G004020	Bottle gourd (USVL1VR-Ls)	cmolsiB475
CmoCh19G004020	Cucumber (Gy14) v2	cgybcmoB350
CmoCh19G004020	Melon (DHL92) v3.6.1	cmomedB531
CmoCh19G004020	Melon (DHL92) v3.6.1	cmomedB534
CmoCh19G004020	Silver-seed gourd	carcmoB0300
CmoCh19G004020	Silver-seed gourd	carcmoB1056
CmoCh19G004020	Cucumber (Chinese Long) v3	cmocucB0600
CmoCh19G004020	Cucumber (Chinese Long) v3	cmocucB0610
CmoCh19G004020	Watermelon (97103) v2	cmowmbB530
CmoCh19G004020	Wax gourd	cmowgoB0645
CmoCh19G004020	Wax gourd	cmowgoB0649
CmoCh19G004020	Cucurbita moschata (Rifu)	cmocmoB391
CmoCh19G004020	Cucumber (Gy14) v1	cgycmoB0867
CmoCh19G004020	Cucumber (Gy14) v1	cgycmoB0869
CmoCh19G004020	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004020	Cucurbita maxima (Rimu)	cmacmoB602
CmoCh19G004020	Wild cucumber (PI 183967)	cmocpiB508
CmoCh19G004020	Wild cucumber (PI 183967)	cmocpiB514
CmoCh19G004020	Cucumber (Chinese Long) v2	cmocuB502
CmoCh19G004020	Cucumber (Chinese Long) v2	cmocuB508
CmoCh19G004020	Melon (DHL92) v3.5.1	cmomeB460
CmoCh19G004020	Melon (DHL92) v3.5.1	cmomeB463
CmoCh19G004020	Watermelon (Charleston Gray)	cmowcgB439
CmoCh19G004020	Watermelon (97103) v1	cmowmB465
CmoCh19G004020	Watermelon (97103) v1	cmowmB477