CmoCh19G003720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNADH-plastoquinone oxidoreductase subunit 5
LocationCmo_Chr19 : 3543481 .. 3546291 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACAAGCTTTTTAATGTTCCAAATTCTTCTTGATTCGGGACCACGAGAGTTCTTTGTTGCGATCTCTATCCTTATACCTGTAATAGTGGTATTTATCCAGATTTGGTTTTCTTCTCAGTTGACTAATCAGTCTTTTTTCTTAATCTTCAGTGAAATCAAAAAATGAATTGGACTTCCTCATACATTTGGGTTTTGGGAGAAGCAAGTAATGGAGTGATTCAAAGGGTTCTCGATGTCTTACACACTGTTTTCTTATCCAGACAGACTCTCCCGTCTTTGTCTTCGTCAGGCCCTTTCTTTCATTCATTCAATTAGATCTTAATGTAAATGAACCATAAGTAGCCGCCCTATCCCTAATAGATTGACCCCAAACAAAATAGCATATCCAAATTATAAGAAAACCCATAGAGCAATTATATATAGTCCAAGTAATAAATGCCCAAGTCTCTTTTAACAATTCCAATACGATCCCCATGTCTCATTAGCCGTACAGCCTCTGACTGAAAGAATACCTATGCTTAAAAAGAGAAACCAGCAACTAAGTTCTCTCTCTTCCTTCATGTATTGGAATCAAAGGAAAATCACGCATTTAATAAATGATCATTCTTTTTACCAAGAATTCTTATAGATAGAGTTTGGAAATGGAATCACTCTTACTTGCATCATTAAACAATGAGATTGGACAGCGGGAACTCATAGTGGAAATTGATGCATTTCAGTTAAAAACCTGTGAAGTAGCAAAACCTTGGGCAAAAATAGTACTTGGTGCAGTTATTGCCCTTAAATAAATAGTTTAATAATGGAGAAAGAAACCCCATGAAAGAAAGAAATAGTAATGTTTCATATAAATCACTTAATGGTAAATGCCTCAAATAAATCCAACGAGTAACTAATCATCCTCTTAGACAGAGAAAAAAGTAGCTATCATGCCCTTCCTTTTCTGACGAAGGAAGCATAGAGTCCTATGCTTTCATCGACTAATAAGGTTATCAAATTCATTGTTTAATGATTCCAAATGAATTTAATACAAATCAGTCTGATTTTACTCGATCTACTTGTAGACTTTTATGATTGATACCAAAAAGAGTCTTTTTTTCGTCTAATTATTCCTTCTTGCTCTATAGCGGGAAATTAGTGTAATGCACATACTATCTAATAATAATAAATAAAATTAGTAGTTTCTATATTGGATATTCTCATTTGTTATTAACTGATCCTTTTGAAAAGAGATAAGAGCTGGTGAATCATTAAAATTAATTAGGAATTCAATATTCATGGATCATACATACCTTTCATCTCACTTCCAATTACTATCTGACTTAATAGGAGTGGGACTTCTACTTTCTTTTTACGACCCCCCGCGACCAAACCCCTTCGACGTATGTACTCTTTTCCGAGTATTTGATTGGTAAGTATAGTGATCTTTCAGTTTATCTATCTATTGACCAAATAAATAGTAGTTATATCTATCCATATGTATGGTCTTGTACTATCAATAATGCTTTTTCTTTAGAGTTGGGCTACTTGATCGATCCACTTACTTGTATTATGTCCATATTCAGAACGATGGAATTATGCTTCTGTTCTTATTTATAGTGACAATTATATGTCTGTCTCACGATCAAGGATATTATTTGAGAGCGTATATGAGTTTGTTCAATACATCAATGTTGGGATTAGTTACTAGTGAGAATTTGATCGATCCATCTTTCTCTTTTTTGGGAATTGGTTGGAATGTGGTCTTATATATTACTATTAATAGGGTTTTGGTTCACTCCACCTACTACTGCTGCGGCAAATGCTTGTCAAAAGGCATTTGTAACTAATCGCCTGGGGGATTTATTTGGGTTTATTTATTATTAGGGATTTGAGGTCTTTATTGGACAACACGGAGTTTTGCATTTAGGGATTGATTTATAATAATGAGGTGAATTTCTTCTTTCTGACTTTCTACGCCGTCCTTCCTATGAGTTGCAGGTGCAGTTGCTAAATCTGCTCAATTTACTCTGAATCTATGGTTACCTGATGCTATGGAGATGGAGGGTCCTATCCCGATTTTGGCTCTTATACATCCTGCTACAATGTTAGGGGAAGTTTTCTTGTCGCTCGCCTTCTTCCTTTAATAGTAATACCTTACATCATGAATCTAATAACTAGTAGGGATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTCAGAGAAGTTTAGCTAGCCTATTCTACAATGTCTCAATTCGGTTATATATATGGATGATTCATCTTTGTTAGCTGCTTTGGGTATAGGGTCTTATCGAGCTGCTCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATCTGGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCTAGATAAAAGTCAGAATATGGTTCTTGTGCGGGGGTTAACCATGTGCCAATTACAAGAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGGCCAAAGATGCCATTCTTAATGATAGTGTGTGTAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCTACAGAAGGATTAACAGCATTTTATATCTTTCCTATCTACTTACTGACTTTTGAACTGACTTTTGAGGGACATTTACAACACATTTTCAAACAGGGGAAAAACAATTCCCTCTATTCAATATCATTATGGGGTAAAGAAGGATCAACAAAGAATAAACAAACACTTTCCCTTCTTATCACTATTAACTAA

mRNA sequence

ATGGATACAAGCTTTTTAATGTTCCAAATTCTTCTTGATTCGGGACCACGAGAGTTCTTTGTTGCGATCTCTATCCTTATACCTGTAATAGTGGATCTGGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCTAGATAAAAGTCAGAATATGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGGCCAAAGATGCCATTCTTAATGATAGTGTGTGTAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCTACAGAAGGATTAACAGCATTTTATATCTTTCCTATCTACTTACTGACTTTTGAACTGACTTTTGAGGGACATTTACAACACATTTTCAAACAGGGGAAAAACAATTCCCTCTATTCAATATCATTATGGGGTAAAGAAGGATCAACAAAGAATAAACAAACACTTTCCCTTCTTATCACTATTAACTAA

Coding sequence (CDS)

ATGGATACAAGCTTTTTAATGTTCCAAATTCTTCTTGATTCGGGACCACGAGAGTTCTTTGTTGCGATCTCTATCCTTATACCTGTAATAGTGGATCTGGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCTAGATAAAAGTCAGAATATGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGGCCAAAGATGCCATTCTTAATGATAGTGTGTGTAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCTACAGAAGGATTAACAGCATTTTATATCTTTCCTATCTACTTACTGACTTTTGAACTGACTTTTGAGGGACATTTACAACACATTTTCAAACAGGGGAAAAACAATTCCCTCTATTCAATATCATTATGGGGTAAAGAAGGATCAACAAAGAATAAACAAACACTTTCCCTTCTTATCACTATTAACTAA
Homology
[Close]
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match: NU5C_CICAR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cicer arietinum GN=ndhF PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-34
Identity = 85/142 (59.86%), Postives = 94/142 (66.20%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSME++VGYS DKSQNMV                    LSLCGIPP ACFW+KD ILN
Sbjct: 363 IIHSMEAIVGYSPDKSQNMVLMGGLTKHAPITKNAFLIGTLSLCGIPPFACFWSKDGILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQGKNNSLYSISL 156
           DS   WLYSPIFAIIACST GLTAFY+F IYLL FE     H QH F   KN+S YSISL
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYLLVFEGYLNVHFQH-FNGKKNSSFYSISL 482

Query: 157 WGKEGSTKNKQTLSL--LITIN 159
           WGKE   K K+ + L  L+T+N
Sbjct: 483 WGKEEKKKLKKKIHLLALLTMN 500

[Close]
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match: NU5C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lotus japonicus GN=ndhF PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 87/142 (61.27%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNM---------VPF---------LSLCGIPPLACFWAKDAILN 96
           IIHSME++VGYS +KSQNM         VP          LSLCGIPP ACFW+KD ILN
Sbjct: 363 IIHSMEAIVGYSPNKSQNMLLMGGLTKHVPITKTAFLIGTLSLCGIPPFACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQGKNNSLYSISL 156
           DS   WLYSPIFAIIACST GLTAFY+F IYLL FE  F  H Q+ F   KN+S YSISL
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYLLVFEGYFNVHFQN-FNGKKNSSFYSISL 482

Query: 157 WGKEG--STKNKQTLSLLITIN 159
           WGKEG    KNK  L  L+T+N
Sbjct: 483 WGKEGKKKLKNKIHLLSLLTMN 500

[Close]
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 90/145 (62.07%), Postives = 97/145 (66.90%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCG+PPLACFW+KD ILN
Sbjct: 363 IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGVPPLACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTF+GHL    K   GK NNSLYS
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFDGHLNLYCKNYSGKTNNSLYS 482

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K+      L+T+N
Sbjct: 483 ISLWGKEGSKIIKKNFPFFSLLTMN 500

[Close]
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match: NU5C_MANES (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta GN=ndhF PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 83/143 (58.04%), Postives = 94/143 (65.73%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSME+++GYS DKSQNMV                    LSLCGIPP ACFW+KD ILN
Sbjct: 363 IIHSMEAILGYSPDKSQNMVLMGGLTKHIPITKTAFLLGTLSLCGIPPFACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQGKNNSLYSISL 156
           D   SWLYSPIFAIIAC T GLTAFY+F +YLLTF+  F  H Q  +   KN+S YSISL
Sbjct: 423 D---SWLYSPIFAIIACFTAGLTAFYMFRVYLLTFDGHFNAHFQS-YSGKKNSSFYSISL 482

Query: 157 WGKEGS---TKNKQTLSLLITIN 159
           WGKEGS    KN + L+LL   N
Sbjct: 483 WGKEGSKMLNKNLRLLALLTMNN 501

[Close]
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match: NU5C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhF PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 85/142 (59.86%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSME++VGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 363 IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQGKNNSLYSISL 156
           DS   WLYSPIFAIIACST GLTAFY+F IYLLTFE  F  H Q+ +   K++S YSISL
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHFNVHFQN-YNGQKSSSCYSISL 482

Query: 157 WGKE--GSTKNKQTLSLLITIN 159
           WGKE   + KN   L  L+T+N
Sbjct: 483 WGKEVPKTIKNHFCLLSLLTMN 500

[Close]
BLAST of CmoCh19G003720 vs. TrEMBL
Match: W8W2M7_9ROSI (NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 33  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 92

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 93  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLFFKNYSGKTNNSLYS 152

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 153 ISLWGKEGSKIIKNNLSFLSLLTMN 170

[Close]
BLAST of CmoCh19G003720 vs. TrEMBL
Match: W8W2M6_9ROSI (NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 18  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 77

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 78  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKNYSGKTNNSLYS 137

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 138 ISLWGKEGSKIIKNNLSFLSLLTMN 155

[Close]
BLAST of CmoCh19G003720 vs. TrEMBL
Match: W8W1W6_9ROSI (NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 33  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 92

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 93  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKNYSGKTNNSLYS 152

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 153 ISLWGKEGSKIIKNNLSFLSLLTMN 170

[Close]
BLAST of CmoCh19G003720 vs. TrEMBL
Match: Q29S48_9ROSI (NADH dehydrogenase subunit F (Fragment) OS=Seyrigia humbertii GN=ndhF PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-34
Identity = 96/146 (65.75%), Postives = 99/146 (67.81%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KDAILN
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDAILN 89

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IY+    LTFEGHL   FK   GK NNSLYS
Sbjct: 90  DS---WLYSPIFAIIACSTAGLTAFYMFRIYV----LTFEGHLNLYFKNYSGKTNNSLYS 149

Query: 157 ISLWGKEGS---TKNKQTLSLLITIN 159
           ISLWGKEGS    KN   LSLL   N
Sbjct: 150 ISLWGKEGSKIIKKNFDFLSLLTMKN 168

[Close]
BLAST of CmoCh19G003720 vs. TrEMBL
Match: A0A0S2IGR2_CUCPE (NdhF OS=Cucurbita pepo subsp. ovifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-34
Identity = 96/146 (65.75%), Postives = 99/146 (67.81%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 363 IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQ--GK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK+  GK NNSLYS
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKKYSGKTNNSLYS 482

Query: 157 ISLWGKEGS---TKNKQTLSLLITIN 159
           ISLWGKEGS    KN   LSLL   N
Sbjct: 483 ISLWGKEGSKIIKKNFPFLSLLTMNN 501

[Close]
BLAST of CmoCh19G003720 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-32
Identity = 81/145 (55.86%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSME++VGYS DKSQNM+                    LSLCGIPPLACFW+KD ILN
Sbjct: 363 IIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIF---KQGKNNSLYS 156
           DS+   L+SPIFAIIACST GLTAFY+F IYL    LTFEGHL   F      K+ S YS
Sbjct: 423 DSL---LFSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNTYFLNYSGKKSGSFYS 482

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           +SLWGKE   K  +   L  L+T+N
Sbjct: 483 LSLWGKEEEKKLNKNFGLVPLLTMN 500

[Close]
BLAST of CmoCh19G003720 vs. NCBI nr
Match: gi|597565443|emb|CCQ71863.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 33  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 92

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 93  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLFFKNYSGKTNNSLYS 152

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 153 ISLWGKEGSKIIKNNLSFLSLLTMN 170

[Close]
BLAST of CmoCh19G003720 vs. NCBI nr
Match: gi|597565433|emb|CCQ71858.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 18  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 77

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 78  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKNYSGKTNNSLYS 137

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 138 ISLWGKEGSKIIKNNLSFLSLLTMN 155

[Close]
BLAST of CmoCh19G003720 vs. NCBI nr
Match: gi|597565427|emb|CCQ71855.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 33  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 92

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK   GK NNSLYS
Sbjct: 93  DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKNYSGKTNNSLYS 152

Query: 157 ISLWGKEGSTKNKQTLSL--LITIN 159
           ISLWGKEGS   K  LS   L+T+N
Sbjct: 153 ISLWGKEGSKIIKNNLSFLSLLTMN 170

[Close]
BLAST of CmoCh19G003720 vs. NCBI nr
Match: gi|70780105|gb|AAZ08371.1| (NADH dehydrogenase subunit F, partial [Seyrigia humbertii])

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 96/146 (65.75%), Postives = 99/146 (67.81%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KDAILN
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDAILN 89

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFK--QGK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IY+    LTFEGHL   FK   GK NNSLYS
Sbjct: 90  DS---WLYSPIFAIIACSTAGLTAFYMFRIYV----LTFEGHLNLYFKNYSGKTNNSLYS 149

Query: 157 ISLWGKEGS---TKNKQTLSLLITIN 159
           ISLWGKEGS    KN   LSLL   N
Sbjct: 150 ISLWGKEGSKIIKKNFDFLSLLTMKN 168

[Close]
BLAST of CmoCh19G003720 vs. NCBI nr
Match: gi|952955069|gb|ALO22422.1| (NdhF (plastid) [Cucurbita okeechobeensis])

HSP 1 Score: 152.5 bits (384), Expect = 6.1e-34
Identity = 96/146 (65.75%), Postives = 99/146 (67.81%), Query Frame = 1 

Query: 37  IIHSMESVVGYSLDKSQNMVPF------------------LSLCGIPPLACFWAKDAILN 96
           IIHSMESVVGYS DKSQNMV                    LSLCGIPPLACFW+KD ILN
Sbjct: 363 IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWSKDEILN 422

Query: 97  DSVCSWLYSPIFAIIACSTEGLTAFYIFPIYLLTFELTFEGHLQHIFKQ--GK-NNSLYS 156
           DS   WLYSPIFAIIACST GLTAFY+F IYL    LTFEGHL   FK+  GK NNSLYS
Sbjct: 423 DS---WLYSPIFAIIACSTAGLTAFYMFRIYL----LTFEGHLNLYFKKYSGKTNNSLYS 482

Query: 157 ISLWGKEGS---TKNKQTLSLLITIN 159
           ISLWGKEGS    KN   LSLL   N
Sbjct: 483 ISLWGKEGSKIIKKNFPFLSLLTMNN 501

The following BLAST results are available for this feature:
BLAST of CmoCh19G003720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU5C_CICAR1.6e-3459.86NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cicer arietinum GN=nd... [more]
NU5C_LOTJA2.1e-3461.27NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lotus japonicus GN=nd... [more]
NU5C_CUCSA3.5e-3462.07NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU5C_MANES1.0e-3358.04NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta GN=... [more]
NU5C_EUCGG1.0e-3359.86NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus s... [more]
BLAST of CmoCh19G003720 vs. TrEMBL
Match NameE-valueIdentityDescription
W8W2M7_9ROSI1.5e-3465.52NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1[more]
W8W2M6_9ROSI1.9e-3465.52NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1[more]
W8W1W6_9ROSI1.9e-3465.52NdhF protein (Fragment) OS=Trichosanthes cucumerina GN=ndhF PE=4 SV=1[more]
Q29S48_9ROSI2.5e-3465.75NADH dehydrogenase subunit F (Fragment) OS=Seyrigia humbertii GN=ndhF PE=4 SV=1[more]
A0A0S2IGR2_CUCPE4.2e-3465.75NdhF OS=Cucurbita pepo subsp. ovifera GN=ndhF PE=3 SV=1[more]
BLAST of CmoCh19G003720 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01010.17.9e-3255.86ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein[more]
BLAST of CmoCh19G003720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|597565443|emb|CCQ71863.1|2.1e-3465.52NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina][more]
gi|597565433|emb|CCQ71858.1|2.7e-3465.52NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina][more]
gi|597565427|emb|CCQ71855.1|2.7e-3465.52NADH dehydrogenase subunit F, partial (chloroplast) [Trichosanthes cucumerina][more]
gi|70780105|gb|AAZ08371.1|3.6e-3465.75NADH dehydrogenase subunit F, partial [Seyrigia humbertii][more]
gi|952955069|gb|ALO22422.1|6.1e-3465.75NdhF (plastid) [Cucurbita okeechobeensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001750ND/Mrp_mem
IPR002128NADH_UbQ_OxRdtase_chlpt_su5_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003720.1CmoCh19G003720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 55..99
score: 1.
IPR002128NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminalPFAMPF01010Proton_antipo_Ccoord: 108..154
score: 1.
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 37..136
score: 1.3
NoneNo IPR availablePANTHERPTHR22773:SF82NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 5, CHLOROPLASTICcoord: 37..136
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G003720Watermelon (97103) v2cmowmbB533
CmoCh19G003720Wax gourdcmowgoB0648
CmoCh19G003720Cucurbita moschata (Rifu)cmocmoB393
CmoCh19G003720Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G003720Cucurbita maxima (Rimu)cmacmoB509
CmoCh19G003720Cucurbita maxima (Rimu)cmacmoB510
CmoCh19G003720Cucurbita maxima (Rimu)cmacmoB511
CmoCh19G003720Cucurbita maxima (Rimu)cmacmoB604
CmoCh19G003720Watermelon (Charleston Gray)cmowcgB443
CmoCh19G003720Watermelon (97103) v1cmowmB474
CmoCh19G003720Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G003720Cucurbita pepo (Zucchini)cmocpeB504
CmoCh19G003720Bottle gourd (USVL1VR-Ls)cmolsiB476