CmoCh19G003610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Polygalacturonase) (3.2.1.15) (3.2.1.67)
LocationCmo_Chr19 : 3257864 .. 3259714 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTATGAAACCTTAATGCTTCTTCTTTCCCTTCCGCTACTTTTACTTTTGAACCATGCCTTGGTTGATGGATTAACCTTAGATATTGTTAGTCTTGGAGCCAAACCTGATGGAAAGACCGATGCCTCGCCTGTACTTCAAATAGCATGGGCCAAGGCTTGTGACTCGACGAGACCAGCTACTATTCACGTGCCCAAAGGCATATTCTACGTTCAAAGTGGGAGCTTTAATGGGCCTTGTAAGAACAATGCTATTACTATTTGCATCGATGGTACTCTTGTGGCTTCCTCGACATTCAAGTTCTAGCTAAAACTAAAGCTTGGATTGGGTTTAAAGACGTAAATGGGCTTTCCATTCATGGTGGTGTTATTGATGGGAAAGGATCTGGCATATGAGATTGTAAACACTCAGGGAATAATTGTCCCGATGGAGCACGGGCATGCATTATTTAAGTTGGCTAGATATAACAAAATTTAAAAATTTGTCTTTAGGGAAAAGTTGAAAGAAAATGGATTGTACTAATTCTTGCTCTGAATTGTTTTGAATTTGTAGAATCTTGAAATCACAAATGCACAAAATGTTATCATCAATGGATTAACTTCAGTTAATAGCCAAATATTTAACATTGTGGTGCACGGTTGCCAAAATGTGAACATTCAAGGAGTGAAGGTTTCGGATCCTAGCAATAGTCCGAACACAGATGGCATCCATGTGCAGGAGTCATCAGATGTGACCATCCTCAGTTCCAACATCGGCCCCAGTGACGACTGCATCTCAATTGGTCGAGGGACCACCAACTTATGGATAAAAAGTGTTACATGTGGACCTGGGCACAGAATCAGGTAGGTGACAACAAATAATTTTTGGAAATTATTTTGTTGGTATGAAAAATATATTTGAAATTATAAAATCAAATATAAAATTAGATTTTGAATGAATAAAAACACGTTTTAGAAATTTTTTTTCTCTTGAACATGGTGATTTTAACTATTTCACTATTTGTTGAATATGTGTTTGTAGCATTGGGAGCTTGGGAAAGTTGGCGGATGAGCCTGGAGTGAAAAATGTGACAGTTACATCATCGACTTTTAGCAAGACTACGAATGGAGTGAGGATTAAGTCTTGGGGAAGACCAAGCAGTGGGTTTGCTACGGATATTCATTTTCAACACATTACTTTGGATAATGTGAAGAACCCTATCATAATTGATCAAGATTACTGTCCACATGACAAAGGTTGCCCACATCAGGTATATTTTCTCATTAATCCTCGACAGGTTGACTTCTTACAAATTATATTTAACTTTAAATTTGATTAATAGAGTTTAAATTTTATATTTCATGCGTAATTTATTTATTTTTTTATCTTCAACGAGTTGGAATTTATCTTGTTCAAGACGTGTGTTAAATTAGGAGCATTACTTCAGCTACACTTTTAGGTAATGAATTGTGGTGGACAATGTAACATTCACATATCTTCAAAAGAGTGTTATATTATTCACTTTGATCAACGTAAGCTTTTATGGCTTTATTTTTTTAGTTTTCACATAAAAGATCTTGTACCATTCGAGATAGTTGTCTTTATTCAATTTTCATGCTATATTTTGATTGTTCTTGTTGGCATGAATAGGATTCGGGAGTAAAAATTAGCGACGTAACCTACGAAGATATCAAGGGAACATCAGCCACTAAAATAGGAGTCAAATTTGATTGTAGCCCAACAAATCCTTGCACTGGACTCACCTTGGAAGACATTAAAGTGATTTATGATGGTCAAATTGCTAAAGCTTCATGCAAAGGTGCCAAAGGAACTACCTCGGTGTGGTTGAACCTGCTAGTTGCTTAG

mRNA sequence

ATGGCTCTCTATGAAACCTTAATGCTTCTTCTTTCCCTTCCGCTACTTTTACTTTTGAACCATGCCTTGGTTGATGGATTAACCTTAGATATTGTTAGTCTTGGAGCCAAACCTGATGGAAAGACCGATGCCTCGCCTGTACTTCAAATAGCATGGGCCAAGGCTTGTGACTCGACGAGACCAGCTACTATTCACGTGCCCAAAGGCATATTCTACGTTCAAAGTGGGAGCTTTAATGGGCCTTGTAAGAACAATGCTATTACTATTTGCATCGATGTTAATAGCCAAATATTTAACATTGTGGTGCACGGTTGCCAAAATGTGAACATTCAAGGAGTGAAGGTTTCGGATCCTAGCAATAGTCCGAACACAGATGGCATCCATGTGCAGGAGTCATCAGATGTGACCATCCTCAGTTCCAACATCGGCCCCAGTGACGACTGCATCTCAATTGGTCGAGGGACCACCAACTTATGGATAAAAAGTGTTACATGTGGACCTGGGCACAGAATCAGCATTGGGAGCTTGGGAAAGTTGGCGGATGAGCCTGGAGTGAAAAATGTGACAGTTACATCATCGACTTTTAGCAAGACTACGAATGGAGTGAGGATTAAGTCTTGGGGAAGACCAAGCAGTGGGTTTGCTACGGATATTCATTTTCAACACATTACTTTGGATAATGTGAAGAACCCTATCATAATTGATCAAGATTACTGTCCACATGACAAAGGTTGCCCACATCAGGATTCGGGAGTAAAAATTAGCGACGTAACCTACGAAGATATCAAGGGAACATCAGCCACTAAAATAGGAGTCAAATTTGATTGTAGCCCAACAAATCCTTGCACTGGACTCACCTTGGAAGACATTAAAGTGATTTATGATGGTCAAATTGCTAAAGCTTCATGCAAAGGTGCCAAAGGAACTACCTCGGTGTGGTTGAACCTGCTAGTTGCTTAG

Coding sequence (CDS)

ATGGCTCTCTATGAAACCTTAATGCTTCTTCTTTCCCTTCCGCTACTTTTACTTTTGAACCATGCCTTGGTTGATGGATTAACCTTAGATATTGTTAGTCTTGGAGCCAAACCTGATGGAAAGACCGATGCCTCGCCTGTACTTCAAATAGCATGGGCCAAGGCTTGTGACTCGACGAGACCAGCTACTATTCACGTGCCCAAAGGCATATTCTACGTTCAAAGTGGGAGCTTTAATGGGCCTTGTAAGAACAATGCTATTACTATTTGCATCGATGTTAATAGCCAAATATTTAACATTGTGGTGCACGGTTGCCAAAATGTGAACATTCAAGGAGTGAAGGTTTCGGATCCTAGCAATAGTCCGAACACAGATGGCATCCATGTGCAGGAGTCATCAGATGTGACCATCCTCAGTTCCAACATCGGCCCCAGTGACGACTGCATCTCAATTGGTCGAGGGACCACCAACTTATGGATAAAAAGTGTTACATGTGGACCTGGGCACAGAATCAGCATTGGGAGCTTGGGAAAGTTGGCGGATGAGCCTGGAGTGAAAAATGTGACAGTTACATCATCGACTTTTAGCAAGACTACGAATGGAGTGAGGATTAAGTCTTGGGGAAGACCAAGCAGTGGGTTTGCTACGGATATTCATTTTCAACACATTACTTTGGATAATGTGAAGAACCCTATCATAATTGATCAAGATTACTGTCCACATGACAAAGGTTGCCCACATCAGGATTCGGGAGTAAAAATTAGCGACGTAACCTACGAAGATATCAAGGGAACATCAGCCACTAAAATAGGAGTCAAATTTGATTGTAGCCCAACAAATCCTTGCACTGGACTCACCTTGGAAGACATTAAAGTGATTTATGATGGTCAAATTGCTAAAGCTTCATGCAAAGGTGCCAAAGGAACTACCTCGGTGTGGTTGAACCTGCTAGTTGCTTAG
Homology
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BLAST of CmoCh19G003610 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.1e-80
Identity = 145/227 (63.88%), Postives = 177/227 (77.97%), Query Frame = 1 

Query: 84  NNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIG 143
           N  ++    +NSQ+F+IV++  QNV +QGV+VS   NSPNTDGIHVQ SS VTIL+S I 
Sbjct: 157 NIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIA 216

Query: 144 PSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVR 203
             DDC+SIG GT+NLWI+ V CGPGH ISIGSLGK  +E GV+NVTV + TFS T NG+R
Sbjct: 217 TGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLR 276

Query: 204 IKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIK 263
           IKSWGRPS+GFA +I FQH T+ NV+NPI+IDQ YCP +KGCP Q SGV+ISDVTYEDI 
Sbjct: 277 IKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIH 336

Query: 264 GTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTT 311
           GTSAT++ VKFDCSP +PC  + LED+K+ Y  Q A++SC  A GTT
Sbjct: 337 GTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTT 383

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BLAST of CmoCh19G003610 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.9e-66
Identity = 126/228 (55.26%), Postives = 162/228 (71.05%), Query Frame = 1 

Query: 84  NNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIG 143
           N  I+    +NSQ F+IV+    NVNI GVKVS   NSPNTDGIHV+ S  V I +S IG
Sbjct: 163 NIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIG 222

Query: 144 PSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVR 203
             DDCISIG G+TN++I+++ CGPGH ISIGSLG+  +E GV NVTV++  F  T NGVR
Sbjct: 223 TGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVR 282

Query: 204 IKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIK 263
           IK+WG+ S+ FA +I FQHI +  VKNPIIIDQ YC H K CP Q+SGVK+S+V YEDI 
Sbjct: 283 IKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLH-KPCPKQESGVKVSNVRYEDIH 342

Query: 264 GTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
           GTS T++ V  DCS   PCTG+ ++D+ ++   + A+ASC  A G+ +
Sbjct: 343 GTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSAN 389

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BLAST of CmoCh19G003610 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-53
Identity = 100/223 (44.84%), Postives = 154/223 (69.06%), Query Frame = 1 

Query: 94  NSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIGR 153
           +S++F+I V  C+N+ ++ +K+  P  SPNTDGIH+ +S  V I++S+I   DDCISIG 
Sbjct: 169 DSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGD 228

Query: 154 GTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSSG 213
           GT N+ IK +TCGPGH ISIGSLGK  +E  V+ + +++ T + T+NG RIK+W     G
Sbjct: 229 GTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGG 288

Query: 214 FATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGVK 273
             ++IHF+ IT++NV +PI+IDQ YCP +K   +++S VK+S++++++I+GTSA    +K
Sbjct: 289 AVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIK 348

Query: 274 FDCSPTNPCTGLTLEDIKVIYDG-QIAKASCKGAKGTTSVWLN 316
           F CS ++PC  + L DI + ++G + A + C   K  TS  LN
Sbjct: 349 FICSGSSPCQNVELADIDIKHNGAEPATSQCLNVKPITSGKLN 391

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BLAST of CmoCh19G003610 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.0e-53
Identity = 99/223 (44.39%), Postives = 153/223 (68.61%), Query Frame = 1 

Query: 94  NSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIGR 153
           +S++F+I V  C+N+ ++ +K+  P  SPNTDGIH+ +S  V I++S+I   DDCISIG 
Sbjct: 169 DSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGD 228

Query: 154 GTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSSG 213
           GT N+ IK +TCGPGH ISIGSLGK  +E  V+ + +++ T + T+NG RIK+W     G
Sbjct: 229 GTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGG 288

Query: 214 FATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGVK 273
             ++IHF+ IT++NV +PI+IDQ YCP +K   +++S VK+S++++++I+GTSA    +K
Sbjct: 289 AVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIK 348

Query: 274 FDCSPTNPCTGLTLEDIKVIYDG-QIAKASCKGAKGTTSVWLN 316
           F CS ++PC  + L DI + ++G + A + C   K  T   LN
Sbjct: 349 FICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLN 391

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BLAST of CmoCh19G003610 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.9e-51
Identity = 94/215 (43.72%), Postives = 143/215 (66.51%), Query Frame = 1 

Query: 94  NSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIGR 153
           +S+ F+++V GC+N+   G  ++ P +SPNTDGIH+ +S+DV IL++NIG  DDC+SIG 
Sbjct: 167 DSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGD 226

Query: 154 GTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSW-GRPSS 213
           G+  + ++ V CGPGH +S+GSLGK   E  V+ +TV + T + T NGVRIK+W   P +
Sbjct: 227 GSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGT 286

Query: 214 GFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGV 273
              +DIHF+ IT+ NVKNP+IIDQ+Y P ++      S +K+S ++++++KGTS T  GV
Sbjct: 287 ITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGV 346

Query: 274 KFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAK 308
              CS   PC G+ L ++ + ++G    A C   K
Sbjct: 347 VLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNVK 381

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BLAST of CmoCh19G003610 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 5.3e-84
Identity = 146/219 (66.67%), Postives = 183/219 (83.56%), Query Frame = 1 

Query: 93  VNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIG 152
           +NSQ+FNIVV+GC+NV IQGV VS   +SPNTDGIHVQ+S +V I S++IG  DDCISIG
Sbjct: 164 INSQMFNIVVYGCENVQIQGVNVSSAGDSPNTDGIHVQQSLNVNISSTSIGTGDDCISIG 223

Query: 153 RGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSS 212
            GTTNLW++++ CGPGH ISIGSLG+  +E GV+NVTVT++TF+ T NGVRIKSWGRPS+
Sbjct: 224 PGTTNLWMENIKCGPGHGISIGSLGRQVEEAGVENVTVTTATFTGTQNGVRIKSWGRPSN 283

Query: 213 GFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGV 272
            FA  I FQHI   NV NPI+IDQ+YCP+++GCP Q SGVK+SDVTY+D+ GTSA+++ +
Sbjct: 284 AFANKILFQHIRFYNVNNPILIDQNYCPNNQGCPGQASGVKVSDVTYQDVNGTSASEVAI 343

Query: 273 KFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            FDCSPTNPCTG+TLEDI++ Y+ QI KASCK A+GT S
Sbjct: 344 NFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNARGTAS 382

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BLAST of CmoCh19G003610 vs. TrEMBL
Match: B9N8Q6_POPTR (Polygalacturonase family protein OS=Populus trichocarpa GN=POPTR_0017s03740g PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 5.8e-83
Identity = 153/245 (62.45%), Postives = 189/245 (77.14%), Query Frame = 1 

Query: 67  PKGIFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDG 126
           P+G   ++  + N    N AIT    +NSQ+F+IV+HGCQNV +QGVKVS   NSPNTDG
Sbjct: 147 PRGATSLEFSNSN----NIAITGLASLNSQLFHIVIHGCQNVKVQGVKVSAAGNSPNTDG 206

Query: 127 IHVQESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVK 186
           IHVQ S+ VTIL+S IG  DDC+SIG GT++LWI++V CGPGH ISIGSLGK + E GV+
Sbjct: 207 IHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLGKESQEAGVQ 266

Query: 187 NVTVTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCP 246
           NVTV +STF+ T NG+RIKSWGRPS+GFA DI FQH  ++NV+NPI+IDQ+YCP +K CP
Sbjct: 267 NVTVKTSTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCP 326

Query: 247 HQDSGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGA 306
            Q SGVKISDVTY+DI G+SAT++ VKFDCS   PCTG+ LED+K+ Y  Q A+ASC  A
Sbjct: 327 GQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNA 386

Query: 307 KGTTS 312
            G  S
Sbjct: 387 GGVAS 387

[Close]
BLAST of CmoCh19G003610 vs. TrEMBL
Match: B9N8R2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03870g PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 9.9e-83
Identity = 151/229 (65.94%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 83  KNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNI 142
           KN AIT    +NSQ+F+IV++GCQNV +QGVKVS   NSPNTDGIHVQ S+ VTIL+S I
Sbjct: 152 KNIAITGLASLNSQMFHIVINGCQNVKLQGVKVSADGNSPNTDGIHVQLSTAVTILNSRI 211

Query: 143 GPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGV 202
           G  DDCISIG GT+NLWI++V CGPGH ISIGSLGK + E GV++VTV ++TF+ T NG+
Sbjct: 212 GTGDDCISIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVRDVTVKTTTFTGTENGL 271

Query: 203 RIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDI 262
           RIK+WGRPS+GFAT+I FQH+ ++NVKNPI+IDQ+YCP +K CP Q SGVKISDVTY+DI
Sbjct: 272 RIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNYCPGNKNCPGQASGVKISDVTYQDI 331

Query: 263 KGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            GTSAT++ VKFDCS   PCTG+ LED+K+ YD + A+ASC  A G  S
Sbjct: 332 HGTSATELAVKFDCSRKYPCTGIKLEDVKLTYDNKPAEASCSNAGGVAS 380

[Close]
BLAST of CmoCh19G003610 vs. TrEMBL
Match: U5FH48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03770g PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.8e-82
Identity = 153/242 (63.22%), Postives = 188/242 (77.69%), Query Frame = 1 

Query: 70  IFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHV 129
           +F VQS  F+    N AIT    +NSQ+F+IV++GCQNV +QGVKVS   NSPNTDGIHV
Sbjct: 166 LFTVQSLEFSNS-NNIAITGLASLNSQLFHIVINGCQNVKVQGVKVSAAGNSPNTDGIHV 225

Query: 130 QESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVT 189
           Q S+ VTIL+S IG  DDC+SIG GT++LWI+SV CGPGH ISIGSLGK + E GV+NVT
Sbjct: 226 QSSTGVTILNSRIGTGDDCVSIGPGTSSLWIESVACGPGHGISIGSLGKESQEAGVQNVT 285

Query: 190 VTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQD 249
           V ++TF+ T NG+RIKSWGRPS+ FA DI FQH  ++NV+NPI+IDQ+YCP +K CP Q 
Sbjct: 286 VMTTTFTGTENGLRIKSWGRPSNRFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCPGQV 345

Query: 250 SGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGT 309
           SGVKISDVTY+DI G+SAT++ VKFDCS   PCTG+ LED+K+ Y  Q A+ASC  A G 
Sbjct: 346 SGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGV 405

Query: 310 TS 312
            S
Sbjct: 406 AS 406

[Close]
BLAST of CmoCh19G003610 vs. TrEMBL
Match: U5FKL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03850g PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 8.4e-82
Identity = 151/245 (61.63%), Postives = 189/245 (77.14%), Query Frame = 1 

Query: 67  PKGIFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDG 126
           P+G   ++  + N    N AIT    +NSQ+F+IV++GCQNV +QGVKVS   NSPNTDG
Sbjct: 148 PRGATSLEFSNSN----NIAITGLASLNSQLFHIVINGCQNVKVQGVKVSAAGNSPNTDG 207

Query: 127 IHVQESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVK 186
           IHVQ S+ VTIL+S IG  DDC+SIG GT++LWI++V CGPGH ISIGSLGK + E GV+
Sbjct: 208 IHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLGKESQEAGVQ 267

Query: 187 NVTVTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCP 246
           NVTV ++TF+ T NG+RIKSWGRPS+GFA DI FQH  ++NV+NPI+IDQ+YCP +K CP
Sbjct: 268 NVTVKTTTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCP 327

Query: 247 HQDSGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGA 306
            Q SGVKISDVTY+DI G+SAT++ VKFDCS   PCTG+ LED+K+ Y  Q A+ASC  A
Sbjct: 328 GQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNA 387

Query: 307 KGTTS 312
            G  S
Sbjct: 388 GGVAS 388

[Close]
BLAST of CmoCh19G003610 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 280.8 bits (717), Expect = 1.1e-75
Identity = 130/227 (57.27%), Postives = 171/227 (75.33%), Query Frame = 1 

Query: 83  KNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNI 142
           +N  I+    +NSQ+F++ ++GC NV + GVKVS   NSPNTDGIHVQ SS V+IL+S I
Sbjct: 151 RNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKI 210

Query: 143 GPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGV 202
              DDC+SIG GT  LWI++V CGPGH ISIGSLGK + E GV+N+TV ++TF+ T NGV
Sbjct: 211 STGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKESVEVGVQNITVKTATFTGTENGV 270

Query: 203 RIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDI 262
           RIKSW RPS+GFA +I FQH  ++NV+NPI+IDQ+YCP ++ CP+Q SG+KISDV + DI
Sbjct: 271 RIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDI 330

Query: 263 KGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGT 310
            GTSAT++GVK DCS   PCTG+ ++D+K+ Y  + A   C  A G+
Sbjct: 331 HGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRNKPATTDCSHAGGS 377

[Close]
BLAST of CmoCh19G003610 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 278.5 bits (711), Expect = 5.2e-75
Identity = 134/225 (59.56%), Postives = 168/225 (74.67%), Query Frame = 1 

Query: 84  NNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIG 143
           N  ++    +NSQ+F++V++GC NV +QGVKV    NSPNTDGIHVQ SS V+I ++ I 
Sbjct: 150 NVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSSVSIFNTKIS 209

Query: 144 PSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVR 203
             DDC+SIG GT  LWI++V CGPGH ISIGSLGK + E GV+NVTV + TF+ T NGVR
Sbjct: 210 TGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQNVTVKTVTFTGTDNGVR 269

Query: 204 IKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIK 263
           IKSW RPSSGFA +I FQH  ++NV+NPIIIDQ+YCP D  CP Q SG+KISDV + DI 
Sbjct: 270 IKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCP-DHDCPRQVSGIKISDVLFVDIH 329

Query: 264 GTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKG 309
           GTSAT++GVK DCS   PCTG+ LED+K+ Y  + A ++C  A G
Sbjct: 330 GTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASACTHAGG 373

[Close]
BLAST of CmoCh19G003610 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-72
Identity = 134/254 (52.76%), Postives = 175/254 (68.90%), Query Frame = 1 

Query: 58  STRPATIHVPKGIFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSD 117
           S R    H P+G    +S SF+  C N  ++     NSQ  ++ VH   NV I+ V++  
Sbjct: 136 SCRKKGSHCPQG---ARSISFSW-CNNVLLSGLSSFNSQNMHVTVHHSSNVRIENVRIRA 195

Query: 118 PSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLG 177
           PS SPNTDGIHVQ SS VTI    I   DDCI++ +G+ N+WI+ V CGPGH ISIGSLG
Sbjct: 196 PSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLG 255

Query: 178 KLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQD 237
             A+E GV+NVTVTSS F+KT NGVRIK+W RPS GF  ++ F+++ ++NV+NP+IIDQ+
Sbjct: 256 DYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQN 315

Query: 238 YCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQ 297
           YCP+ KGCP Q SGVKIS VT+ +IKGTS T I +K DCS +N CTGL L+DIK+ Y  +
Sbjct: 316 YCPNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTYMRR 375

Query: 298 IAKASCKGAKGTTS 312
            + + C+ A G  S
Sbjct: 376 SSASYCRNAHGRAS 385

[Close]
BLAST of CmoCh19G003610 vs. TAIR10
Match: AT2G43860.1 (AT2G43860.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-67
Identity = 126/228 (55.26%), Postives = 162/228 (71.05%), Query Frame = 1 

Query: 84  NNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIG 143
           N  I+    +NSQ F+IV+    NVNI GVKVS   NSPNTDGIHV+ S  V I +S IG
Sbjct: 163 NIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIG 222

Query: 144 PSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVR 203
             DDCISIG G+TN++I+++ CGPGH ISIGSLG+  +E GV NVTV++  F  T NGVR
Sbjct: 223 TGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVR 282

Query: 204 IKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIK 263
           IK+WG+ S+ FA +I FQHI +  VKNPIIIDQ YC H K CP Q+SGVK+S+V YEDI 
Sbjct: 283 IKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLH-KPCPKQESGVKVSNVRYEDIH 342

Query: 264 GTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
           GTS T++ V  DCS   PCTG+ ++D+ ++   + A+ASC  A G+ +
Sbjct: 343 GTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSAN 389

[Close]
BLAST of CmoCh19G003610 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-66
Identity = 129/252 (51.19%), Postives = 174/252 (69.05%), Query Frame = 1 

Query: 58  STRPATIHVPKGIFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSD 117
           S R +  + P G   V+S SFN   K+  I+    +NSQ+ ++ ++GC NV ++ VK+  
Sbjct: 133 SCRKSGQNCPPG---VRSISFNS-AKDVIISGVKSMNSQVTHMTLNGCTNVVVRNVKLVA 192

Query: 118 PSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLG 177
           P NSPNTDG HVQ S+ VT   S +   DDC++IG GT NL I  + CGPGH +SIGSL 
Sbjct: 193 PGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGVSIGSLA 252

Query: 178 KLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQD 237
           K   E GV+NVTV+SS F+ + NGVRIKSW RPS+GF   + FQ + + NV+NPIIIDQ+
Sbjct: 253 KELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQN 312

Query: 238 YCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYD-G 297
           YCP  +GCP++ SGVKIS VTY++I+GTSAT+  +K  CS ++PCTG+TL+DIK+ Y+ G
Sbjct: 313 YCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKG 372

Query: 298 QIAKASCKGAKG 309
             A + C  A G
Sbjct: 373 TPATSFCFNAVG 380

[Close]
BLAST of CmoCh19G003610 vs. NCBI nr
Match: gi|659121214|ref|XP_008460550.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 6.8e-85
Identity = 153/219 (69.86%), Postives = 180/219 (82.19%), Query Frame = 1 

Query: 93  VNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIG 152
           VNSQ+FNIVV+GCQNV IQGV VS  S+SPNTDGIHVQ+S +V I +SNIG  DDCISIG
Sbjct: 164 VNSQMFNIVVYGCQNVQIQGVNVSSASDSPNTDGIHVQQSLNVNISNSNIGTGDDCISIG 223

Query: 153 RGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSS 212
            GTTNLW++++ CGPGH ISIGSLGK A+E GV+NVTVT++TF  T NGVRIKSWGRPS 
Sbjct: 224 PGTTNLWMENINCGPGHGISIGSLGKQAEEAGVQNVTVTTATFRGTQNGVRIKSWGRPSD 283

Query: 213 GFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGV 272
           GFAT I FQHI   NV NPI IDQ+YCPH + CP Q SGVKISDVTY+DI GTSAT++ +
Sbjct: 284 GFATKILFQHILFYNVSNPIFIDQNYCPHQQSCPGQASGVKISDVTYQDINGTSATEVAI 343

Query: 273 KFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            FDCSP+NPCTG+ LEDI + Y+ QI +ASC+ A+GT S
Sbjct: 344 NFDCSPSNPCTGIHLEDINLNYNDQIPQASCENAQGTAS 382

[Close]
BLAST of CmoCh19G003610 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 7.6e-84
Identity = 146/219 (66.67%), Postives = 183/219 (83.56%), Query Frame = 1 

Query: 93  VNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNIGPSDDCISIG 152
           +NSQ+FNIVV+GC+NV IQGV VS   +SPNTDGIHVQ+S +V I S++IG  DDCISIG
Sbjct: 164 INSQMFNIVVYGCENVQIQGVNVSSAGDSPNTDGIHVQQSLNVNISSTSIGTGDDCISIG 223

Query: 153 RGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGVRIKSWGRPSS 212
            GTTNLW++++ CGPGH ISIGSLG+  +E GV+NVTVT++TF+ T NGVRIKSWGRPS+
Sbjct: 224 PGTTNLWMENIKCGPGHGISIGSLGRQVEEAGVENVTVTTATFTGTQNGVRIKSWGRPSN 283

Query: 213 GFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDIKGTSATKIGV 272
            FA  I FQHI   NV NPI+IDQ+YCP+++GCP Q SGVK+SDVTY+D+ GTSA+++ +
Sbjct: 284 AFANKILFQHIRFYNVNNPILIDQNYCPNNQGCPGQASGVKVSDVTYQDVNGTSASEVAI 343

Query: 273 KFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            FDCSPTNPCTG+TLEDI++ Y+ QI KASCK A+GT S
Sbjct: 344 NFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNARGTAS 382

[Close]
BLAST of CmoCh19G003610 vs. NCBI nr
Match: gi|566211201|ref|XP_006372674.1| (Polygalacturonase precursor family protein [Populus trichocarpa])

HSP 1 Score: 315.8 bits (808), Expect = 8.4e-83
Identity = 153/245 (62.45%), Postives = 189/245 (77.14%), Query Frame = 1 

Query: 67  PKGIFYVQSGSFNGPCKNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDG 126
           P+G   ++  + N    N AIT    +NSQ+F+IV+HGCQNV +QGVKVS   NSPNTDG
Sbjct: 147 PRGATSLEFSNSN----NIAITGLASLNSQLFHIVIHGCQNVKVQGVKVSAAGNSPNTDG 206

Query: 127 IHVQESSDVTILSSNIGPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVK 186
           IHVQ S+ VTIL+S IG  DDC+SIG GT++LWI++V CGPGH ISIGSLGK + E GV+
Sbjct: 207 IHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLGKESQEAGVQ 266

Query: 187 NVTVTSSTFSKTTNGVRIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCP 246
           NVTV +STF+ T NG+RIKSWGRPS+GFA DI FQH  ++NV+NPI+IDQ+YCP +K CP
Sbjct: 267 NVTVKTSTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCP 326

Query: 247 HQDSGVKISDVTYEDIKGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGA 306
            Q SGVKISDVTY+DI G+SAT++ VKFDCS   PCTG+ LED+K+ Y  Q A+ASC  A
Sbjct: 327 GQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNA 386

Query: 307 KGTTS 312
            G  S
Sbjct: 387 GGVAS 387

[Close]
BLAST of CmoCh19G003610 vs. NCBI nr
Match: gi|566211225|ref|XP_006372686.1| (hypothetical protein POPTR_0017s03870g [Populus trichocarpa])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 151/229 (65.94%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 83  KNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNI 142
           KN AIT    +NSQ+F+IV++GCQNV +QGVKVS   NSPNTDGIHVQ S+ VTIL+S I
Sbjct: 152 KNIAITGLASLNSQMFHIVINGCQNVKLQGVKVSADGNSPNTDGIHVQLSTAVTILNSRI 211

Query: 143 GPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGV 202
           G  DDCISIG GT+NLWI++V CGPGH ISIGSLGK + E GV++VTV ++TF+ T NG+
Sbjct: 212 GTGDDCISIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVRDVTVKTTTFTGTENGL 271

Query: 203 RIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDI 262
           RIK+WGRPS+GFAT+I FQH+ ++NVKNPI+IDQ+YCP +K CP Q SGVKISDVTY+DI
Sbjct: 272 RIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNYCPGNKNCPGQASGVKISDVTYQDI 331

Query: 263 KGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            GTSAT++ VKFDCS   PCTG+ LED+K+ YD + A+ASC  A G  S
Sbjct: 332 HGTSATELAVKFDCSRKYPCTGIKLEDVKLTYDNKPAEASCSNAGGVAS 380

[Close]
BLAST of CmoCh19G003610 vs. NCBI nr
Match: gi|743921034|ref|XP_011004576.1| (PREDICTED: polygalacturonase-like [Populus euphratica])

HSP 1 Score: 314.7 bits (805), Expect = 1.9e-82
Identity = 150/229 (65.50%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 83  KNNAITICIDVNSQIFNIVVHGCQNVNIQGVKVSDPSNSPNTDGIHVQESSDVTILSSNI 142
           KN AIT    +NSQ+F+IV++GCQNV +QGVKVS   NSPNTDGIHVQ S+ VTIL+S I
Sbjct: 159 KNIAITGLASLNSQMFHIVINGCQNVKLQGVKVSADGNSPNTDGIHVQLSTAVTILNSRI 218

Query: 143 GPSDDCISIGRGTTNLWIKSVTCGPGHRISIGSLGKLADEPGVKNVTVTSSTFSKTTNGV 202
           G  DDC+SIG GT+NLWI++V CGPGH ISIGSLGK + E GV++VTV ++TF+ T NG+
Sbjct: 219 GTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKESQEAGVRDVTVKTTTFTGTENGL 278

Query: 203 RIKSWGRPSSGFATDIHFQHITLDNVKNPIIIDQDYCPHDKGCPHQDSGVKISDVTYEDI 262
           RIK+WGRPSSGFAT+I FQH  ++NVKNPI+IDQ+YCP +K CP Q SGVKISDVTY+DI
Sbjct: 279 RIKTWGRPSSGFATNILFQHAVMNNVKNPILIDQNYCPGNKNCPGQASGVKISDVTYQDI 338

Query: 263 KGTSATKIGVKFDCSPTNPCTGLTLEDIKVIYDGQIAKASCKGAKGTTS 312
            GTSAT++ VKFDCS  +PCTG+ L+D+K+ YD + A+ASC  A G  S
Sbjct: 339 HGTSATELAVKFDCSRKSPCTGIKLQDVKLTYDNKPAEASCSNAGGVAS 387

The following BLAST results are available for this feature:
BLAST of CmoCh19G003610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_PRUPE5.1e-8063.88Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH1.9e-6655.26Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S... [more]
PGLR_GOSHI1.8e-5344.84Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_GOSBA9.0e-5344.39Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_MEDSA2.9e-5143.72Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
BLAST of CmoCh19G003610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN91_CUCSA5.3e-8466.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1[more]
B9N8Q6_POPTR5.8e-8362.45Polygalacturonase family protein OS=Populus trichocarpa GN=POPTR_0017s03740g PE=... [more]
B9N8R2_POPTR9.9e-8365.94Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03870g PE=3 SV=1[more]
U5FH48_POPTR3.8e-8263.22Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03770g PE=3 SV=1[more]
U5FKL6_POPTR8.4e-8261.63Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03850g PE=3 SV=1[more]
BLAST of CmoCh19G003610 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59850.11.1e-7557.27 Pectin lyase-like superfamily protein[more]
AT2G43870.15.2e-7559.56 Pectin lyase-like superfamily protein[more]
AT2G43880.12.4e-7252.76 Pectin lyase-like superfamily protein[more]
AT2G43860.11.1e-6755.26 Pectin lyase-like superfamily protein[more]
AT1G05660.12.0e-6651.19 Pectin lyase-like superfamily protein[more]
BLAST of CmoCh19G003610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121214|ref|XP_008460550.1|6.8e-8569.86PREDICTED: polygalacturonase-like [Cucumis melo][more]
gi|449445220|ref|XP_004140371.1|7.6e-8466.67PREDICTED: polygalacturonase [Cucumis sativus][more]
gi|566211201|ref|XP_006372674.1|8.4e-8362.45Polygalacturonase precursor family protein [Populus trichocarpa][more]
gi|566211225|ref|XP_006372686.1|1.4e-8265.94hypothetical protein POPTR_0017s03870g [Populus trichocarpa][more]
gi|743921034|ref|XP_011004576.1|1.9e-8265.50PREDICTED: polygalacturonase-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003610.1CmoCh19G003610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 93..308
score: 1.2
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 132..153
score: 3300.0coord: 215..236
score: 3400.0coord: 105..131
score: 28.0coord: 249..276
score: 10000.0coord: 185..206
score:
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 15..314
score: 1.15
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 16..88
score: 4.3E-10coord: 89..311
score: 4.3
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..311
score: 5.2E
NoneNo IPR availablePANTHERPTHR31375:SF2POLYGALACTURONASE/PECTINASEcoord: 1..311
score: 5.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G003610ClCG09G014760Watermelon (Charleston Gray)cmowcgB444
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G003610Watermelon (Charleston Gray)cmowcgB452
CmoCh19G003610Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G003610Cucurbita moschata (Rifu)cmocmoB109
CmoCh19G003610Cucurbita maxima (Rimu)cmacmoB147
CmoCh19G003610Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G003610Cucurbita maxima (Rimu)cmacmoB509
CmoCh19G003610Cucurbita maxima (Rimu)cmacmoB510
CmoCh19G003610Cucurbita maxima (Rimu)cmacmoB511