CmoCh19G003500 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G003500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibosomal protein L23
LocationCmo_Chr19 : 3033093 .. 3041594 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGTATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCGGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCGTGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCATATATTTGCAAATTGCTATGAAATATTGGTGTCTTGAGAGGCTGCATTATATTTTGCCAAAACTCATGATTTGTACCATGATAACATCTTACACAAGAATCATTAGAAGTGGCATATTCTAACAGTTTGTGTACGACTTTTGGCTAGCATTTTAATGGGATAATCTGATTAAGAGAATGATTCGAATGCTTTGACCAATTTATTCTTTTGACATTCTTCACCATTACCACTTGGTTCAAGTCAAAGATTTAGTTCGACATATTCTCTTTATAAGGCATTTGTGGATCTAATTCGAATGCTTTGACCATTGATTTTTTTTTTATAAGGCACTTGGTTCAAGTCAACCTCTTTATAAGGCATGATGTGATGTACTGATAATATTGTTGGATCGATATGACAACCCTAGAGGGGTGAATAGGGTTTCAACAATATAAATATTAAAATTTTCTAGTAACAATAAAACTTATATTATGCAATAAAACTTAACAATAATTTAGAATTTAAATAGGAAAAGAGTTAGAAAATATAACACCATGGTTTGGTCAAACTCGACCTACTCCACTCCCCAAGCTCCTCTTGGGAATTTGAATAAAATTTTCTAACTCTTTCCTCAGATCAGAGTCCAACCGCTACTTTTATGAGTGCAAGAGCAAACTCAATTCTTTCCACAGCTCAGGATCAAACCGGTACACCGTTCTTTTTACGAGTTCAAGAGCAAACACAATCCTTTTCACGGCTCAGGATCAAACCGGTACAACTATCTGAAATCTTATAGAAACACACAACTCGAAACACACAACTCTCTGAAGTAATAGATTTACAATTTTCTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCATAAATAGAATTGGACGCTTCGGAGAGATTTCTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCAGAAATAGAATTGGAAGCTTCGGAGAGATTTCTCACAATACAATATAGAATTGGAAGCTTTGGAGAGATTTTTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCAGAAATATAATTAGAAGCTTTTGGAGAGATTTCTTATAATAGACATCTCTCTCAAGAACAAGATAAACCAGAAATAGAATTGGAAGCTTTGGAGAGATTTCTCACACTACAATAGACATCTCTCTCAATAATAAGATAAACCAGAAATAAAATTGGAAACTTGGGGGAGAGCAACAATGGAAGCTTTTAAAAAAGTTGTGTATTGTGTTCTATGTTCTGTGTGTTGTGTTTTCGATTGATCCACGATGTCAATTTTGCCGTTGGTCCATGATGTTAATTTTGTCACCACATCATCGTGTCCGATATCTTGTTTTGAATTCGATTGGTCCATGATGTCAATTTTGCTCCCACATCATCACGTCGGGTATCTTGTTTTGACTGAAAGTTCTTCGTTTTAGCTCTAATTTGAGTGAACCAAAAAAGACGTTGAAATCGTTATTCCCAACCTTACACTGTCTAAAAAATACTGAGAATTGTTAATAATTGAAGATAGGTTTGTTATCATCAAAACATCAATTAATTAATTAATTAAAATTAATTAATTTGAAATTAAGGAAAAAAAAAAAAAAAACAACAACTATGATAAATGTTATGGTGTAACACGTTTGGCGATATAGTACATGTTATATGATATGCTGATGATATATATATATATATATATACATCTTTGGTATTGATCTTTTACAGGGGAGGGAAGGTAATATCGCTGTACCCTGTAAGAATCAATAGGTGATTGAAGGAATAAATAGGGAGAGGAGCGAGCGAAGCAGACTGATAGTTTACGAGGGGCAGACAATAGAATTGTGAGACCGATAGGTGAATGGGCAGGTTCTAGAGCAAAATGGATACAAATTAGTGGCTGCTACTTAGTATGGGCAATGGGTCTGAAAAAGTCTCTAAACTCAAAATGGTGAGATATTTGTACCCTGTCGAAGTAAGGAACCATGACATATATGTTTGGAATAGATTCCTTTACCAATTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTGATCAAGGCATTTAGATAAAGACTCGTTTTTTCCTCTTTTCGGATGGTAAATCTTTCTCAGAACATGGAGTGTGAATCAAAGCCCCATCTTTGAATTGAAATTGAGATATTGATGCAAGTTCTTCCCCTCTGAATAAGATAGATTCATATCTGAAAGAGGTTGACAATAAGTTTTTTCAAAATTGACTTTTTGTCCCTCTGTTAGGTTAGATGTGTTCTAGAAATGTCTATGATCGAGTAAATAGCTCGACGAACGAATGGATTGAATCGAATTGGAAAATGGAAAAATTTGTACAAGTTATACCTTTCCACTTTGTGTAAAATAGTCAGGTATGAATATGTTAGATACTTGTGACTTGATTGGTTAAATAGTATCTCTCTCCCAGCAGCATGTTTTTTTTACGGCCGCACAAAGAAAAGATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATACGTCAAATCATAATTATTGATACGGGTCTTTTCCACATAACCAACATACATCAAAAGGGAATCTTTTGTTACAATAGAAGCAGAGTAGATAGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAGAGTGTTATCAAAGGATTTCCTGTGATTCTTTCTAGTATGGAATGAGTAAATCATTTACTTTGCTATCTTATCGAAGAAAAAGAAATTGTTATATTGTTCTTGATCAAGAATTTCTCTTTTTGGGAAGTCTCATGATCATCCAATAAGAAGGGTTTCCATTTTGTCAAATTCAAACTCTTTGAAGACCTATTGATTCTAACAACTGATTTTAGAGTTGATCATTCGGACCTTTCAATTCATAGATGTAGATCTCGGACCTATTAATGGAGATATTCTCGAAACTCATAAAGAAAAAAGGAAGTGAGTTAGAATAGAAGAAACTTGGACAAAAAGAAAGGAAGTGACTTAGACAGACAAATCCTTTTTATAGATAACATCATACCAATCCAGCGAATATAGATTAATATGTAATCGATCCAACACTACTTGAAAATGGCTCTTTCGCTCAGAAATGAAATATTCCTGGAAATTCTTGCTCCCACTCCCATTGGACCATTTCTATCTATATGCATTAGAATCCCGATTCATGGATCTCTCGAGAAAGAAAAATAAGAGGAAGAGGATCAAACCATTTCTTCTGACCCTTTTTCTTGATAAATCTTGGTTGATCGTATATTGCATTATAGTTCTATGATTAAGAGAAGAGTCTCATTTCCTATTTGATCCATTTTCATTCTATATTCTAAGTTGCGATCGGATCTATAAAAAGAATCGATTCAATACTTATGGTACTTATATTGGATTTGAATCTGATTTTGGATCAATATAGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTCAAAATCATTCCCGGGGGAGGTCCGTACCCATTTTTTTTTGCTGATCCTTCGATTCATTCTCTTCATAAAAAAGAAAGAAAAGGTAGAACCAAGACATCCTTCTTTTTTGATGATATGAATCCAACAACTGATCACTTCCATGTACCTGAACGAGCAATTACAAGAAGTAATACAAATAAGATTCAAGAATCAAATCAAGAAAATAATGGAGTGGCTGATATTGGAAAGTAATTAGAAGACTTGCTTGGTAGTTGAATTACCAATTAAGGAAATTTATGAAAAGTAATTAGAAGACTTGACTTTGTTAGTTGAATTATCAATTAAAGGAATTTATTAATGTCTTATTTGCTTCAATTTGTATTTAATAGCATTCGTTACCATTTATTAGTGATTGGTGGCTGAACTTTATTTTGTTAGGGTTATCTCTTGAGCCTATTTAAAGACATGTAATATTTTGGGGGATTTTGGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAACCTTGCTTTATGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTTGATCTAAGAGTCATTCATCTTCTAACCAACTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTTCTCGGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGTTTATCATTTCGATTCATCCCTTTACTCATGAAAGAATTCTTTTTGATCCAATCTGTAGGAATCAAGGCAAATCCCTTATGATACACCACATCCGGCTCGGTTATTAATAGAGTGAATAGATCTTCCATTTCTTTCAATCTCTCTTCTGATTCAAAATTGTGGTGTAAGGTGTATCCCCTCCAGTTCCGGTCATGGAATAGATGAAATAAATAAATGGATTTTTGTGAAAGAATGAAATCTTATTGTAACGGTCCATATCCAATTCAGCCTTCGGAACAATATCACACCCCGAATCTGATTCAATAGGATGAATTGAGACGTTATTTTGATAACACGTATATATCTTGAATATATTAACTATTTCTTTCTTTTCCGATCGCCTGGAAGGAAGGGACAAAAGATCTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCTTAGTAGGATTCGAACCCATATTCAGTTCTTACCATTTGTCAGACAGAAAAGAACAAATGGATCTTGTAGGATTCCCGAGAAATTCTACAATTTCTTCCCCGGAATCGGATGATTATTCATCTGCTTCTCACTCACATTCTTTGAATAGCCGAGACATTGAGCAATATCCAGAAAAGCATTTTGGGAATCGGTCTGATTCTATCTCTGTTCGTTCTGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTTGTTGTTGAATCTCTCTTTGATTGAGAAATGTATGGTACTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCATTAGATTCTTTCAATTGGCTAGAATCCGTTACTTGAACGAAACTAGATCTTGCTTGTGGAATCATATTGAATATTTGACAAGACATTCCGTACCTTGCTAAAAAATCGATCCTTATTTACCAACCAATTGTCTAACCAAATCCGATTCGTGCAGATGGATTCTTCCCCTAACTAATGAAGGAAGAGATCTTGGAGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAAATAGACCACTTCTTTCTCGAGAAGAGATGGGAAAGAAAGATGCTCAATATCATTTGATTGAATAGTTCTCCCATCTCCTTGTTGTTTGAAGAAGCTCAATTGGTCTTTTTTCATGAAAAGCAAGAGATAAGAAATCCAGTCTTTCACTAAGATTTCAAATAGCTGTCCCGAATTCAAGTTGATGCTCTTTTGCCTCTTCCTCGGAGAAAGACGATCAAACAATTACCAATCATGGTCCTTGCCTCTTTCTCTTTGAATGAGATCTCATCAATTCCAGCGACGGTTTCATTAGATATATTACAATGAGCAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTGAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAAGAGCTCTCAGAGATCCTTTTTCCTTTTTGAAGATGAGCAAAACAATCCACCTATTGATATAGTATAGGAAGAGCCAAAATCTTCTTCCAATGTCTCATTTCTGGGTCCAATGAATAGGTAGAGGAAGAAACCCTATCAAATAGAGTTTCCTTTCGATTGTTAATACGTGATAGATATAAGGAAGGACCACTACTACAAATAGTACTACACCCTTGATCGTGAAATATTGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGTATACTCTAAATTCGGGAGTCTAAGAGTTTTATAAAACGGGATGGATGAAAACAAATGTGAATGAAAGATACCAGGCCATGAATCTAAAAAATAGTAAGAATGATTGATCTCTCTCAATTAGAAAATCCAAGATTGGAATTGATGTCCTTTCATTGAGGCCTCCTAAATTGCATTGATTTCTCCTAAAGATTGAATTGCAAATTGGAATTTGGTTATTCACCATGTACAAGGATCCTCCGCTAAGCATCCATGGCTGAATGGTTAAACCGCCCAACTCATAATTGACGAATTCGTAGGTTCAATTCGTACGGATGCACACCAATGGGACCCTACAATAAGTCTATCTCATCATCTAGACATATTGGTGTGGTGTATATTCATTATGAACTTGAACTTGCATTCTTATTGAGACTCGAACTCATACAGAAGCGGAAAGGCTAGAAGGAAGAATGAATGGGACCCTATTACAAAAGTACTCGGTTATTGGGACCCTATCTATTATGGGACATACAATACATTACAGACAAAAGTACTCAGTTATTGGGACTATATTATACGACATACAATGCTATATATTCAATATGGATATACATGGGACTCTATTATAGGACATACAATAGGACTCTATTATAGGACATACAATAGGACTTTGTTATAGGACATACAATGCTATATATTCAATATGCGGGACCCTATTATGCACCCTATTATAGGGCATTGGTTATGGGACTCCATTATAGGATGCATTATAGACAAAATATGCACCCTATTATAGTATTGGGACTCGAACTCATAGGGAAACGGAAAGGCTAGAAGGAAGAATGAATGGGACCCTATTATGAGACATACAATGCATTACAAACAAAATATGCTGTATTTACAGACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGGTTATTGGAGAAAAAGAAATATACTTCTAATGTCGAACTTGTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCTATTATATTCCACCTCTTAGAAAGAAAAGAACTGAAAGAAAATTAATAGCATACTATTCTTTCGGAGCACGAGTTTTCGGTTTTGTCTTTCCTTCTCAAGAGAATTAAAGGTGAGGGGAGAGTCAATTCAATCCTCAGCCTATTTACCGAGTTCAATGAAAGAAGGGACAGGTGAATGAACTTGACCTTCAGATCATACAACCTATTTACCTTGTGAAAGAAGTAATAGTCCGAGCAATGGATTGAATCAAAGCCAATTTACCGAGTTCTCGAAGCGAGAGGAAAGAAAAGCAAAGAGAAGAGAAAGAATAAAACACCTAGTTACTTATACCTTGTGAAATCTGGGAGTGAACGATCATGAATAAGGAGTCTTTGTTTACGTTTACAGTTCAATCAGGCGGAGAGAGAGAGGAAATGAATTAGCGGCTTTACCCCCAAAATAAGGGAAGGGAATAGAGGGGAAGAAGCTTGACCGGATGATCATACAACCTATTTACCTCGTGAAAGAAGTAATAGTCCTGTTAAACTCGAATTCATCTTGCTTGAGTGGAGTGGTTACAGTCTTTGAATAACTCACAAGAACTTCCTGAGAATAACTCACAAGAACGGAAGGGAATAGAGGTTCTGTCGAATGAATAGGAGTATTGATCTTTTACTGTTCAGGGCGAGTAAATGAATTGAATATGCTTTACCTTCTTCAATGACCCTAAAAATAGGGAGAGCCGAAGTAGTTCTGTCTCATTCATAAGGAGTTGAGTCTTGACTTCCTGTTCTGTCTCTTTGTAATTACCTCTGAAATGGCCTCAAAAATAGGAGAGAAGTCAACTCTCGAGAATCATTCTTACTTACAATAGAGTAAGTGAAAGAATTAAGGTTTCTTCTTATTCTCATTCATTCAGCCTATTTACCGAGTTTGTGAAGTAGTTCAGGAGAATGAATCTTCAGTCTTAGTTGAAGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA

mRNA sequence

ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA

Coding sequence (CDS)

ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA
BLAST of CmoCh19G003500 vs. TrEMBL
Match: W8RN00_PRACL (50S ribosomal protein L23, chloroplastic OS=Praxelis clematidea GN=rpl23 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 1

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRL GKARR     ++       +  + +   +     R   TYYG
Sbjct: 39  VELFFGVKVIAMNSHRLRGKARRMG--PIMGQTMHYRRMIITLQPGYSIPPLRKKRTYYG 98

Query: 107 TYNALQTYDHYASTG 122
           T NALQTYDHYASTG
Sbjct: 99  TDNALQTYDHYASTG 111

BLAST of CmoCh19G003500 vs. TrEMBL
Match: A0A109X1C7_9ASPA (50S ribosomal protein L23, chloroplastic OS=Bletilla ochracea GN=rpl23 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 36/75 (48.00%), Postives = 36/75 (48.00%), Query Frame = 1

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRLPGK RR                                G   G
Sbjct: 39  VELFFGVKVIAMNSHRLPGKGRRM-------------------------------GPIMG 82

Query: 107 TYNALQTYDHYASTG 122
             NALQTYDHYASTG
Sbjct: 99  HINALQTYDHYASTG 82

BLAST of CmoCh19G003500 vs. NCBI nr
Match: gi|598324186|ref|YP_009020805.1| (ribosomal protein L23 (chloroplast) [Praxelis clematidea])

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 1

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRL GKARR     ++       +  + +   +     R   TYYG
Sbjct: 39  VELFFGVKVIAMNSHRLRGKARRMG--PIMGQTMHYRRMIITLQPGYSIPPLRKKRTYYG 98

Query: 107 TYNALQTYDHYASTG 122
           T NALQTYDHYASTG
Sbjct: 99  TDNALQTYDHYASTG 111

BLAST of CmoCh19G003500 vs. NCBI nr
Match: gi|1002166123|ref|YP_009236244.1| (50S ribosomal protein L23 (chloroplast) [Bletilla ochracea])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 36/75 (48.00%), Postives = 36/75 (48.00%), Query Frame = 1

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRLPGK RR                                G   G
Sbjct: 39  VELFFGVKVIAMNSHRLPGKGRRM-------------------------------GPIMG 82

Query: 107 TYNALQTYDHYASTG 122
             NALQTYDHYASTG
Sbjct: 99  HINALQTYDHYASTG 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W8RN00_PRACL2.5e-0953.3350S ribosomal protein L23, chloroplastic OS=Praxelis clematidea GN=rpl23 PE=3 SV... [more]
A0A109X1C7_9ASPA5.9e-0648.0050S ribosomal protein L23, chloroplastic OS=Bletilla ochracea GN=rpl23 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|598324186|ref|YP_009020805.1|3.7e-0953.33ribosomal protein L23 (chloroplast) [Praxelis clematidea][more]
gi|1002166123|ref|YP_009236244.1|8.4e-0648.0050S ribosomal protein L23 (chloroplast) [Bletilla ochracea][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0044424 intracellular part
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003500.1CmoCh19G003500.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None