CmoCh19G003260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G003260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant protein of unknown function (DUF639)
Location	Cmo_Chr19 : 2585126 .. 2586787 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGGTTGTCTTACCATTTGATGATAATGAATTGAAGCCATCTTCAACTCAGCAAAAGGAAGTTGAGCAGCAACAAAAGCCAAAAGATTAGACAAATGGCCGTGACTACGGGAAGGATTCCTCTTTAGATAATAGGTACTGTAACTAGTATTCCTGTGATCGGTTTAGTCGATATTTTCTTTTATAGTTCATATTCCGGATTAGGTTCATCTCTGTAATGATCGGATGAACTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCTTCGAATCAGAAAAAAAAGAGGGGTAGGTCTCGTTGAGGGTTGCTCTCAATTTCTTTAGTGCATAAGAAAGAACTGTAAATTAATATATATACTAATAGGGTTGTTTCTAATGCAAGTTCCCTCTTGGAAAGAGAAAGAAATCAGCTTCTTTCTTGGGTGCTGGTAGTGCTTTCTTTGCTTGACAAGCTGCAGAAAGATTGTGTTGATTTGTTTTGAAGTCCTTTTTCTTTGTTACTTTGGGTTATAAACTCTAATATTGTTGAACTGTTAATTAATTTCGTTACACAATCGGAATGAAAACACCACGTATTTGTTTTAGGGATTGGCGACTTATCCATTTAGTGACTGTCACTGGATGTTCCGAAAATGGGGTACTATCGGATTGGGTGGCATTCCAGCCTTCTTCTCCTTTTAGGGCCTACCCAAAAGAGAATCTAGTGTTTTTTGGTCGTGAATGAATAGGATGAACCGCCCCGTAGTTCGCTTCGGAACTAAACAATTAGAATTAGGCTCATTGAAATGGAATGTGTATTATCCATACAGGGGATCTTTCAATGGAGAAGATTCATCGACCTAAGAGGAAGAGAAGGTCTATCTATTTTATTTAATTATTCAGTTAAACCAATGATTTATTACGAATTGTAACAGATAGCAACAAATATTTCATCCGGCATGTATATTTTTTCGTTTTCGGAAGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGTAAATTTCATCTATTAGTTATTGTTTAAATCGTTTTGGCCCATATCGTTCAGTTCAGACCATGCGGTGATGCGTTCATATAGAGTGTTACTTCAAGAACGTCTTAGATTTCTTGATGAATCTTGTGGAAGTTTTTCTGTTTTACTTACTTAAACTTCTAAGCTTGCCTAGTTACAGTGTGTCACTACATTGTGGTATTTATATTGGCATATTACATTCAACTTCTGGTTGCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAGAGTCTAGAGTTTAAGGTTCGAGGTTCAAATGTAACTTCGTGCTCAAGTCTCTGTAGCAATGACTGAATTATGAAATTCCTGTCACCATCAGAGAATTTTAAGGGTTTAAATCTTTTTATGTTATTATGGTTTATGCTTGG

mRNA sequence

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAGAGTCTAGAGTTTAAGGTTCGAGGTTCAAATGTAACTTCGTGCTCAAGTCTCTGTAGCAATGACTGAATTATGAAATTCCTGTCACCATCAGAGAATTTTAAGGGTTTAAATCTTTTTATGTTATTATGGTTTATGCTTGG

Coding sequence (CDS)

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAG

Homology

[Close]

BLAST of CmoCh19G003260 vs. TrEMBL
Match: A0A0A0M0R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665340 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYVLS LIFDLFTRELQFRQ+TVKRFMKFLRERWDSVP
Sbjct: 388 QITTEVALVLLSSAIILLIVPFKYVLSGLIFDLFTRELQFRQQTVKRFMKFLRERWDSVP 447

Query: 64  AAPVMNKS 72
           A+P  N++
Sbjct: 448 ASPKWNEN 455

[Close]

BLAST of CmoCh19G003260 vs. TrEMBL
Match: M5XJZ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+ ILL+ PFKYVL+ LIFDLFTREL+FR+E V RFM FL+ERWD+VP
Sbjct: 621 QITTEVALVLLSSATILLIFPFKYVLAFLIFDLFTRELEFRREMVTRFMNFLKERWDTVP 680

Query: 64  AAPVMNKSFRIPNGAHFPRKDRR 87
           AAPV+   F   +GA  P   R+
Sbjct: 681 AAPVVVLPF--GSGAPIPEPVRK 701

[Close]

BLAST of CmoCh19G003260 vs. TrEMBL
Match: A0A061DXD0_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_006404 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 2   PFQITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDS 61
           P QITTEVAL  L S+ ILLVVPFKYVL+ L+ DLFTREL+FR+E V+RF+ FL+ERWD+
Sbjct: 729 PQQITTEVALVLLSSATILLVVPFKYVLAFLLCDLFTRELEFRREMVRRFISFLKERWDT 788

Query: 62  VPAAPVM 69
           VPAAPV+
Sbjct: 789 VPAAPVI 795

[Close]

BLAST of CmoCh19G003260 vs. TrEMBL
Match: V4V0B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000484mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+ ILL+VPFKY+L+ L+FDLFTREL+FR+E VKRF+  L+ERWD++P
Sbjct: 591 QITTEVALVLLSSATILLIVPFKYILAFLLFDLFTRELEFRREMVKRFITILKERWDTIP 650

Query: 64  AAPVM 69
           AAPV+
Sbjct: 651 AAPVI 655

[Close]

BLAST of CmoCh19G003260 vs. TrEMBL
Match: A0A061DX14_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006404 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+ ILLVVPFKYVL+ L+ DLFTREL+FR+E V+RF+ FL+ERWD+VP
Sbjct: 730 QITTEVALVLLSSATILLVVPFKYVLAFLLCDLFTRELEFRREMVRRFISFLKERWDTVP 789

Query: 64  AAPVM 69
           AAPV+
Sbjct: 790 AAPVI 794

[Close]

BLAST of CmoCh19G003260 vs. TAIR10
Match: AT1G71240.1 (AT1G71240.1 Plant protein of unknown function (DUF639))

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-17
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVALA L  + +L++VPFKYVL+ +++D FTREL+FR+E VK+F  FLRERW+ VP
Sbjct: 733 QITTEVALAMLSIATVLVIVPFKYVLAFVLYDQFTRELEFRKEMVKKFNAFLRERWEMVP 792

Query: 64  AAPVM 69
           AAPV+
Sbjct: 793 AAPVI 797

[Close]

BLAST of CmoCh19G003260 vs. NCBI nr
Match: gi|659086615|ref|XP_008444028.1| (PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPF YVLS+LIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 807 QITTEVALVLLASAIILLIVPFNYVLSVLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 866

Query: 64  AAPVM 69
           A+PV+
Sbjct: 867 ASPVV 871

[Close]

BLAST of CmoCh19G003260 vs. NCBI nr
Match: gi|700211626|gb|KGN66722.1| (hypothetical protein Csa_1G665340 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYVLS LIFDLFTRELQFRQ+TVKRFMKFLRERWDSVP
Sbjct: 388 QITTEVALVLLSSAIILLIVPFKYVLSGLIFDLFTRELQFRQQTVKRFMKFLRERWDSVP 447

Query: 64  AAPVMNKS 72
           A+P  N++
Sbjct: 448 ASPKWNEN 455

[Close]

BLAST of CmoCh19G003260 vs. NCBI nr
Match: gi|778664216|ref|XP_011660244.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYVLS LIFDLFTRELQFRQ+TVKRFMKFLRERWDSVP
Sbjct: 726 QITTEVALVLLSSAIILLIVPFKYVLSGLIFDLFTRELQFRQQTVKRFMKFLRERWDSVP 785

Query: 64  AAPVM 69
           A+PV+
Sbjct: 786 ASPVV 790

[Close]

BLAST of CmoCh19G003260 vs. NCBI nr
Match: gi|778664223|ref|XP_011660246.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYVLS LIFDLFTRELQFRQ+TVKRFMKFLRERWDSVP
Sbjct: 694 QITTEVALVLLSSAIILLIVPFKYVLSGLIFDLFTRELQFRQQTVKRFMKFLRERWDSVP 753

Query: 64  AAPVM 69
           A+PV+
Sbjct: 754 ASPVV 758

[Close]

BLAST of CmoCh19G003260 vs. NCBI nr
Match: gi|778664226|ref|XP_011660247.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYVLS LIFDLFTRELQFRQ+TVKRFMKFLRERWDSVP
Sbjct: 587 QITTEVALVLLSSAIILLIVPFKYVLSGLIFDLFTRELQFRQQTVKRFMKFLRERWDSVP 646

Query: 64  AAPVM 69
           A+PV+
Sbjct: 647 ASPVV 651

The following BLAST results are available for this feature:

BLAST of CmoCh19G003260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G003260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0R6_CUCSA	1.4e-20	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665340 PE=4 SV=1	[more]
M5XJZ8_PRUPE	2.5e-17	63.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1	[more]
A0A061DXD0_THECC	1.6e-16	71.64	Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_006404 PE=4 SV=1	[more]
V4V0B9_9ROSI	4.6e-16	69.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000484mg PE=4 SV=1	[more]
A0A061DX14_THECC	6.0e-16	72.31	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006404 PE=4 SV=1	[more]

BLAST of CmoCh19G003260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71240.1	3.7e-17	64.62	Plant protein of unknown function (DUF639)	[more]

BLAST of CmoCh19G003260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086615\|ref\|XP_008444028.1\|	1.2e-20	86.15	PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo]	[more]
gi\|700211626\|gb\|KGN66722.1\|	2.0e-20	82.35	hypothetical protein Csa_1G665340 [Cucumis sativus]	[more]
gi\|778664216\|ref\|XP_011660244.1\|	2.6e-20	86.15	PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus]	[more]
gi\|778664223\|ref\|XP_011660246.1\|	2.6e-20	86.15	PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus]	[more]
gi\|778664226\|ref\|XP_011660247.1\|	2.6e-20	86.15	PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006927	DUF639

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003260.1	CmoCh19G003260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006927	Protein of unknown function DUF639	PFAM	PF04842	DUF639	coord: 4..70 score: 3.6
None	No IPR available	PANTHER	PTHR31860	FAMILY NOT NAMED	coord: 4..68 score: 1.5
None	No IPR available	PANTHER	PTHR31860:SF3	SUBFAMILY NOT NAMED	coord: 4..68 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G003260	Cla003462	Watermelon (97103) v1	cmowmB467
CmoCh19G003260	Carg24599	Silver-seed gourd	carcmoB0890

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G003260	Silver-seed gourd	carcmoB1001
CmoCh19G003260	Cucumber (Chinese Long) v3	cmocucB0619
CmoCh19G003260	Watermelon (97103) v2	cmowmbB532
CmoCh19G003260	Watermelon (97103) v2	cmowmbB539
CmoCh19G003260	Wax gourd	cmowgoB0656
CmoCh19G003260	Cucurbita moschata (Rifu)	cmocmoB109
CmoCh19G003260	Cucumber (Gy14) v1	cgycmoB0528
CmoCh19G003260	Cucurbita maxima (Rimu)	cmacmoB147
CmoCh19G003260	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G003260	Wild cucumber (PI 183967)	cmocpiB522
CmoCh19G003260	Cucumber (Chinese Long) v2	cmocuB515
CmoCh19G003260	Melon (DHL92) v3.5.1	cmomeB470
CmoCh19G003260	Watermelon (Charleston Gray)	cmowcgB442
CmoCh19G003260	Watermelon (Charleston Gray)	cmowcgB444
CmoCh19G003260	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G003260	Cucurbita pepo (Zucchini)	cmocpeB493
CmoCh19G003260	Bottle gourd (USVL1VR-Ls)	cmolsiB466
CmoCh19G003260	Cucumber (Gy14) v2	cgybcmoB764
CmoCh19G003260	Melon (DHL92) v3.6.1	cmomedB542