CmoCh19G002110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G002110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAC transcription factor-like protein
Location	Cmo_Chr19 : 1410004 .. 1410660 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTTCGTTCTATGATTTTGATTTCAATTTTCGTTAGAATCTTTAACCTTTTGTTTGTATTCTTGGAACATTTTAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACGTGACCATCGATGAAGATATGAGTTCATAATTTTGACAATGAATGGAACTTTTGCATTTTTTTTTCTTTTTCCGTTTATTAGAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

mRNA sequence

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

Coding sequence (CDS)

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

Homology

[Close]

BLAST of CmoCh19G002110 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-28
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T NS +L  HIN KIGL N TWSGEN   PI+  K  +QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIH------QIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKR 130
           N  L EHHGEWIMHE S+H      +  D NY+LCR+ KN+R KRKL    EL++ +KKR
Sbjct: 131 NESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKKR 190

[Close]

BLAST of CmoCh19G002110 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-28
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T NS +L  HIN KIGL N TWSGEN   PI+  + D+QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIH-----QIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKRI 134
           N    EHHGEWIMHE ++H     +  D NY+LCR+ +NER +RKL    EL++ +KKRI
Sbjct: 131 NESSEEHHGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERARRKLEIQGELKQPNKKRI 190

[Close]

BLAST of CmoCh19G002110 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 71/128 (55.47%), Postives = 85/128 (66.41%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T N  +L  H+N KIGL N TWSGEN   PI+  +  ++II YRK FRY+
Sbjct: 101 LYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYE 160

Query: 75  NVQLSEHHGEWIMHEDSIHQI------EDSNYILCRLSKNERLKRKLGKNLELQ----RH 133
           N  L EHHGEWIMHE S+HQ        DSNY+LCR+ KNER+KRKL   LE+Q    + 
Sbjct: 161 NESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKL---LEIQGEAKQP 220

[Close]

BLAST of CmoCh19G002110 vs. TrEMBL
Match: A0A061FRF9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044619 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  + NS    + IN  +G+   TW GE+  KPI++  +  Q + ++K  RY+
Sbjct: 40  LYFFTKLKKKSQNS----SRINRSVGMG--TWMGEDSGKPIYSHLSAVQPLGFKKRLRYE 99

Query: 75  NVQLSEHHGEWIMHEDSIH----QIEDSNYILCRLSKNERLKRKLGKNLEL 122
              +    G+WIMHE S++       D  Y+LCRL KN+R ++K  K  +L
Sbjct: 100 G-GVPHQVGQWIMHEYSLNIDLVPENDQGYVLCRLRKNDREEKKAEKRRKL 143

[Close]

BLAST of CmoCh19G002110 vs. TrEMBL
Match: A0A061FS95_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-08
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  + N     + IN  +G+   TW GE+  KPI++  +  Q + ++K  RY+
Sbjct: 64  LYFFTKLKKKSQNG----SRINRSVGMG--TWMGEDSGKPIYSQLSAIQPLVFKKRLRYE 123

Query: 75  NVQLSEHHGEWIMHEDSIHQI----EDSNYILCRLSKNERLKRKLGKNLEL 122
              +    G+WIMHE S++ +     D  Y+LCRL KN+R ++K  K  +L
Sbjct: 124 G-GVPHQVGQWIMHEYSLNTVLVPGNDQGYVLCRLRKNDRDEKKAEKRRKL 167

[Close]

BLAST of CmoCh19G002110 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.3e-30
Identity = 75/125 (60.00%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T N   L AHI+ KIGLAN TWSGEN   PIFA + D+QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIHQI------EDSNYILCRLSKNERLKRKLGKNLELQRHSKKR 134
           N Q+ EHHGEWIMHE  +HQ        D NY+LCR+ KNER KRKL +  ELQ+ +KKR
Sbjct: 131 NDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKL-EIRELQQPNKKR 190

[Close]

BLAST of CmoCh19G002110 vs. NCBI nr
Match: gi|659085698|ref|XP_008443554.1| (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 9.5e-30
Identity = 75/125 (60.00%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTD-KQIISYRKCFRY 74
           LYFF KLK  T NS +L  HIN KIG AN TWSGEN   PI+A + D +QII YRK FRY
Sbjct: 71  LYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGENSATPIYANEDDHEQIIGYRKRFRY 130

Query: 75  KNVQLSEHHGEWIMHEDSIHQIE------DSNYILCRLSKNERLKRKLGKNLELQRHSKK 133
           +N QL EHHGEWIMHE S+HQ        D NY+LCR+ KNER KRKL    EL++ +KK
Sbjct: 131 ENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLCRIRKNERAKRKLKVQRELKQPNKK 190

[Close]

BLAST of CmoCh19G002110 vs. NCBI nr
Match: gi|449448878|ref|XP_004142192.1| (PREDICTED: NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T NS +L  HIN KIGL N TWSGEN   PI+  K  +QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIH------QIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKR 130
           N  L EHHGEWIMHE S+H      +  D NY+LCR+ KN+R KRKL    EL++ +KKR
Sbjct: 131 NESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKKR 190

[Close]

BLAST of CmoCh19G002110 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T NS +L  HIN KIGL N TWSGEN   PI+  + D+QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIH-----QIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKRI 134
           N    EHHGEWIMHE ++H     +  D NY+LCR+ +NER +RKL    EL++ +KKRI
Sbjct: 131 NESSEEHHGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERARRKLEIQGELKQPNKKRI 190

[Close]

BLAST of CmoCh19G002110 vs. NCBI nr
Match: gi|449442783|ref|XP_004139160.1| (PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 71/128 (55.47%), Postives = 85/128 (66.41%), Query Frame = 1


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T N  +L  H+N KIGL N TWSGEN   PI+  +  ++II YRK FRY+
Sbjct: 75  LYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYE 134

Query: 75  NVQLSEHHGEWIMHEDSIHQI------EDSNYILCRLSKNERLKRKLGKNLELQ----RH 133
           N  L EHHGEWIMHE S+HQ        DSNY+LCR+ KNER+KRKL   LE+Q    + 
Sbjct: 135 NESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKL---LEIQGEAKQP 194

The following BLAST results are available for this feature:

BLAST of CmoCh19G002110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM1_CUCSA	2.1e-28	57.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1	[more]
A0A0A0LFJ5_CUCSA	3.6e-28	54.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1	[more]
A0A0A0M0I5_CUCSA	2.4e-27	55.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1	[more]
A0A061FRF9_THECC	3.2e-08	37.84	Uncharacterized protein OS=Theobroma cacao GN=TCM_044619 PE=4 SV=1	[more]
A0A061FS95_THECC	4.2e-08	36.94	Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1	[more]

BLAST of CmoCh19G002110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131362\|ref\|XP_008465646.1\|	4.3e-30	60.00	PREDICTED: NAC domain-containing protein 72-like [Cucumis melo]	[more]
gi\|659085698\|ref\|XP_008443554.1\|	9.5e-30	60.00	PREDICTED: protein SOMBRERO-like [Cucumis melo]	[more]
gi\|449448878\|ref\|XP_004142192.1\|	3.1e-28	57.02	PREDICTED: NAC transcription factor 29-like [Cucumis sativus]	[more]
gi\|778688961\|ref\|XP_011652873.1\|	5.2e-28	54.84	PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus]	[more]
gi\|449442783\|ref\|XP_004139160.1\|	3.4e-27	55.47	PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003441	NAC-dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002110.1	CmoCh19G002110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PROFILE	PS51005	NAC	coord: 1..108 score: 10
IPR003441	NAC domain	unknown	SSF101941	NAC domain	coord: 8..106 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G002110	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G002110	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G002110	Bottle gourd (USVL1VR-Ls)	cmolsiB448
CmoCh19G002110	Cucumber (Gy14) v2	cgybcmoB348
CmoCh19G002110	Melon (DHL92) v3.6.1	cmomedB528
CmoCh19G002110	Silver-seed gourd	carcmoB1055
CmoCh19G002110	Cucumber (Chinese Long) v3	cmocucB0598
CmoCh19G002110	Watermelon (97103) v2	cmowmbB524
CmoCh19G002110	Watermelon (97103) v2	cmowmbB529
CmoCh19G002110	Wax gourd	cmowgoB0654
CmoCh19G002110	Cucurbita moschata (Rifu)	cmocmoB387
CmoCh19G002110	Cucumber (Gy14) v1	cgycmoB0413
CmoCh19G002110	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G002110	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G002110	Wild cucumber (PI 183967)	cmocpiB506
CmoCh19G002110	Cucumber (Chinese Long) v2	cmocuB500
CmoCh19G002110	Melon (DHL92) v3.5.1	cmomeB457
CmoCh19G002110	Watermelon (Charleston Gray)	cmowcgB440
CmoCh19G002110	Watermelon (Charleston Gray)	cmowcgB469
CmoCh19G002110	Watermelon (97103) v1	cmowmB464
CmoCh19G002110	Watermelon (97103) v1	cmowmB483