CmoCh19G001730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G001730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr19 : 1079789 .. 1080702 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAATTATTGGAAAAGGGGCACATGGGCCAAGAAGCTCTACGCAATTCTCACGATCACGGTCGATCATGGTTCAACTCGATATCGTGAAAGTGAACCGAAGAATTTCTGGATCAGATACAAGTTATGAACCAGTATCTATCAGAGTTCCCAATTGTGGCCATGGATATCGAGTTTCAAAGTAAAAATTAAAGTTGGTGGTGAGAAGTCATTTAGTGATTTTTTGAGTTTTGTCTGTGACGTATCTTTTTTAAGATAGTAAGATGGACTACAAGTCGTTTCAAACGAAAAATTCTATTAATGCTTTTGATTTAATGTGAATCGACTGAGCATCCTCCCGTTAGGACTCACACTTATATTTTTTTTTAGAATTTTTAAAATGGACTCCGAAAGGTGATTCAGAAGGAGAATTCTATGAATGCCTCCAATTTAACCTGAATCGACTTAGTATTCTTGAGTTAGGACTAACATTTACCAATGAGAATGGAAAAATAAGAAACATGGGAGTTTAATTTGAAAGATTTTGACAAAATTAGTAATATGGAAGGTGTTTATTCACTCGATTCATTTAAGGGATTTAATTTCAATAGATTGAGTAGCTATCTCCCCAATAATTTGGTAGAAGGGTAGAATACAGAGATGGATAACATTTCATGGATGGTATGGCATCGCCTATTTAACGAAGTTTACCAACATAATGTGCATGCCTACGTCCATATCTATCTTCGCCACCACTGATACACATCTATTAGGAACAGTCACCGACCTGAAACATATGGCTCGGTACTCCGACTACCTACTCAATGGCCCCCTAGGCTTAAAAAAACTGGCGAAGCTGCTCCTGACATTGCTACTGCCCACTTTGCTCGGTCTGACAGTTTTCTTACCGCATCAGTTTATGCCAATATGA

mRNA sequence

ATGGTGAAAATTATTGGAAAAGGGGCACATGGGCCAAGAAGCTCTACGCAATTCTCACGATCACGGTCGATCATGGTTCAACTCGATATCGTGAAAGTGAACCGAAGAATTTCTGGATCAGATACAAGTTATGAACCAGTATCTATCAGAGTTCCCAATTGTGGCCATGGATATCGAGTTTCAAAAATACAGAGATGGATAACATTTCATGGATGGTATGGCATCGCCTATTTAACGAAGTTTACCAACATAATGTGCATGCCTACGTCCATATCTATCTTCGCCACCACTGATACACATCTATTAGGAACAGTCACCGACCTGAAACATATGGCTCGGTACTCCGACTACCTACTCAATGGCCCCCTAGGCTTAAAAAAACTGGCGAAGCTGCTCCTGACATTGCTACTGCCCACTTTGCTCGGTCTGACAGTTTTCTTACCGCATCAGTTTATGCCAATATGA

Coding sequence (CDS)

ATGGTGAAAATTATTGGAAAAGGGGCACATGGGCCAAGAAGCTCTACGCAATTCTCACGATCACGGTCGATCATGGTTCAACTCGATATCGTGAAAGTGAACCGAAGAATTTCTGGATCAGATACAAGTTATGAACCAGTATCTATCAGAGTTCCCAATTGTGGCCATGGATATCGAGTTTCAAAAATACAGAGATGGATAACATTTCATGGATGGTATGGCATCGCCTATTTAACGAAGTTTACCAACATAATGTGCATGCCTACGTCCATATCTATCTTCGCCACCACTGATACACATCTATTAGGAACAGTCACCGACCTGAAACATATGGCTCGGTACTCCGACTACCTACTCAATGGCCCCCTAGGCTTAAAAAAACTGGCGAAGCTGCTCCTGACATTGCTACTGCCCACTTTGCTCGGTCTGACAGTTTTCTTACCGCATCAGTTTATGCCAATATGA

Homology

[Close]

BLAST of CmoCh19G001730 vs. TrEMBL
Match: A0A0A0KTU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011090 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 61  SKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLN 120
           ++I +WITFHG Y +AYL K   I  MP S+  FA      LGTV DLK+M  + + L+ 
Sbjct: 137 NRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDLKYMIGHCERLMK 196

Query: 121 GPLGLKKLAKLL 133
           G LGLK+LA+LL
Sbjct: 197 GELGLKRLAELL 208

[Close]

BLAST of CmoCh19G001730 vs. TrEMBL
Match: V4S8J5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1


Query: 46  PVSIRVPNCGHGYRVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTV 105
           P  + VP         K  +W+TFHG Y +A++TK      +P S   FA   T    +V
Sbjct: 119 PQCVFVPRLLEILSKHKNLKWVTFHGLYDLAHITKLFINHPLPQSARAFAVGATKYFESV 178

Query: 106 TDLKHMARYSDYLLNGPLGLKKLAKLL 133
            D+K +A+Y D L+ G LGL KLAK+L
Sbjct: 179 LDVKVVAKYCDGLMGGNLGLSKLAKIL 205

[Close]

BLAST of CmoCh19G001730 vs. TrEMBL
Match: A0A0A0LPP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270190 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 59  RVSKIQRWITFHGWYGIAYLTKFTN-IMCMPTSISIFATTDTHLLGTVTDLKHMARYSDY 118
           R   I RW+TFHG Y I YL K    I  +P S+  FAT   + +G V DLKHMA++ + 
Sbjct: 145 RKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFATVVVNEVGIVRDLKHMAKFCEG 204

Query: 119 L-LNGPLGLKKLAKLL 133
           L  +G LGL++L KLL
Sbjct: 205 LDDHGRLGLERLGKLL 220

[Close]

BLAST of CmoCh19G001730 vs. NCBI nr
Match: gi|659108981|ref|XP_008454486.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 61  SKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLN 120
           ++I +WITFHG Y +AYL K   I  MP S+  FA      LGTV DLKHM R  +YL+N
Sbjct: 136 NRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMN 195

Query: 121 GPLGLKKLAKLL 133
           G LGLK+LA+LL
Sbjct: 196 GELGLKRLAELL 207

[Close]

BLAST of CmoCh19G001730 vs. NCBI nr
Match: gi|659133291|ref|XP_008466654.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 61  SKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLN 120
           ++I +WITFHG Y +AYL K   I  MP S+  FAT     LGTV DLKHM    ++L+N
Sbjct: 136 NRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTVNDLKHMICNCEHLMN 195

Query: 121 GPLGLKKLAKLL 133
           G LGLK+LA+LL
Sbjct: 196 GELGLKRLAELL 207

[Close]

BLAST of CmoCh19G001730 vs. NCBI nr
Match: gi|449467363|ref|XP_004151393.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 61  SKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLN 120
           ++I +WITFHG Y +AYL K   I  MP S+  FA      LGTV DLK+M  + + L+ 
Sbjct: 137 NRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDLKYMIGHCERLMK 196

Query: 121 GPLGLKKLAKLL 133
           G LGLK+LA+LL
Sbjct: 197 GELGLKRLAELL 208

[Close]

BLAST of CmoCh19G001730 vs. NCBI nr
Match: gi|567876007|ref|XP_006430593.1| (hypothetical protein CICLE_v10013857mg [Citrus clementina])

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1


Query: 46  PVSIRVPNCGHGYRVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTV 105
           P  + VP         K  +W+TFHG Y +A++TK      +P S   FA   T    +V
Sbjct: 119 PQCVFVPRLLEILSKHKNLKWVTFHGLYDLAHITKLFINHPLPQSARAFAVGATKYFESV 178

Query: 106 TDLKHMARYSDYLLNGPLGLKKLAKLL 133
            D+K +A+Y D L+ G LGL KLAK+L
Sbjct: 179 LDVKVVAKYCDGLMGGNLGLSKLAKIL 205

[Close]

BLAST of CmoCh19G001730 vs. NCBI nr
Match: gi|449458674|ref|XP_004147072.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 59  RVSKIQRWITFHGWYGIAYLTKFTN-IMCMPTSISIFATTDTHLLGTVTDLKHMARYSDY 118
           R   I RW+TFHG Y I YL K    I  +P S+  FAT   + +G V DLKHMA++ + 
Sbjct: 145 RKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFATVVVNEVGIVRDLKHMAKFCEG 204

Query: 119 L-LNGPLGLKKLAKLL 133
           L  +G LGL++L KLL
Sbjct: 205 LDDHGRLGLERLGKLL 220

The following BLAST results are available for this feature:

BLAST of CmoCh19G001730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G001730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTU4_CUCSA	2.1e-09	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011090 PE=4 SV=1	[more]
V4S8J5_9ROSI	4.7e-06	39.08	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1	[more]
A0A0A0LPP0_CUCSA	4.7e-06	47.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270190 PE=4 SV=1	[more]

BLAST of CmoCh19G001730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G001730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108981\|ref\|XP_008454486.1\|	1.1e-11	55.56	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]	[more]
gi\|659133291\|ref\|XP_008466654.1\|	5.4e-11	54.17	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]	[more]
gi\|449467363\|ref\|XP_004151393.1\|	3.0e-09	50.00	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]	[more]
gi\|567876007\|ref\|XP_006430593.1\|	6.8e-06	39.08	hypothetical protein CICLE_v10013857mg [Citrus clementina]	[more]
gi\|449458674\|ref\|XP_004147072.1\|	6.8e-06	47.37	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001730.1	CmoCh19G001730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 64..118 score: 1.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 65..132 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G001730	Cucumber (Chinese Long) v3	cmocucB0598
CmoCh19G001730	Cucumber (Chinese Long) v3	cmocucB0608
CmoCh19G001730	Watermelon (97103) v2	cmowmbB518
CmoCh19G001730	Watermelon (97103) v2	cmowmbB520
CmoCh19G001730	Watermelon (97103) v2	cmowmbB521
CmoCh19G001730	Wax gourd	cmowgoB0637
CmoCh19G001730	Wax gourd	cmowgoB0654
CmoCh19G001730	Cucurbita moschata (Rifu)	cmocmoB208
CmoCh19G001730	Cucurbita moschata (Rifu)	cmocmoB300
CmoCh19G001730	Cucurbita moschata (Rifu)	cmocmoB387
CmoCh19G001730	Cucumber (Gy14) v1	cgycmoB0136
CmoCh19G001730	Cucumber (Gy14) v1	cgycmoB0413
CmoCh19G001730	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G001730	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G001730	Wild cucumber (PI 183967)	cmocpiB506
CmoCh19G001730	Cucumber (Chinese Long) v2	cmocuB500
CmoCh19G001730	Cucumber (Chinese Long) v2	cmocuB522
CmoCh19G001730	Watermelon (Charleston Gray)	cmowcgB451
CmoCh19G001730	Watermelon (Charleston Gray)	cmowcgB466
CmoCh19G001730	Watermelon (97103) v1	cmowmB486
CmoCh19G001730	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G001730	Cucurbita pepo (Zucchini)	cmocpeB482
CmoCh19G001730	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G001730	Cucurbita pepo (Zucchini)	cmocpeB508
CmoCh19G001730	Bottle gourd (USVL1VR-Ls)	cmolsiB450
CmoCh19G001730	Bottle gourd (USVL1VR-Ls)	cmolsiB464
CmoCh19G001730	Bottle gourd (USVL1VR-Ls)	cmolsiB470
CmoCh19G001730	Bottle gourd (USVL1VR-Ls)	cmolsiB471
CmoCh19G001730	Cucumber (Gy14) v2	cgybcmoB348
CmoCh19G001730	Cucumber (Gy14) v2	cgybcmoB358
CmoCh19G001730	Melon (DHL92) v3.6.1	cmomedB546
CmoCh19G001730	Silver-seed gourd	carcmoB0399
CmoCh19G001730	Silver-seed gourd	carcmoB1055