CmoCh19G001400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G001400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WD repeat-containing 26
Location	Cmo_Chr19 : 795798 .. 796505 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

mRNA sequence

ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

Coding sequence (CDS)

ATGGAGAGTTCATCTGTGTTAATTGGATCCAAGGGCCTAATAAGGAAACATGAGTTTGTTAGGATCATAATTCAATGCTTATATTCATTTGGTTACCAAAAATCTGCACTAAGTTTGGAATCCGAGTCTGGAATTTCATACAAATCTAATGATTTCAAGTTGTTGGAGTCTCAAATTTTCAGTGGTAATTGGTATGGTTGCATTGACACAATAAGTGGCATCAAGGATTTAACTGATGAAGTAAGAGTTTCCGCCCTGTTTCTTGTTCTAAAACATTGTTTGCTTGAGTATTCTAACTGTGGGGATGATGCATCGGCACTAGCTATGTTGCGTAAAGAAGCTCCAATGTTCCATTTTAGTAGAGACAAAATCCACAAGCTTGCTTACAGCATATTTACTTCTAAGAACATGAATTTGGATTATTCAAATGACAGTGTCATTCATGAATTAAGGAAAAAGTTATTGCGAGATTTGGAAAAAGCTCTTCCTCCACCTACTTGTTTGCCAGACAGGAGGTTGGAGCAACTGGTTGAAACCACCGTAGTGGCACAGATTGATTCATGTATGTATCATAATTTTTCAGGTGCAGTTTCAATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAAACAATTCAGGTGCATTTTATTATGCTCGTATTCCATGTTTATACTCTTAATTTCCATGCATCATTTTAG

Homology

[Close]

BLAST of CmoCh19G001400 vs. Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-16
Identity = 61/211 (28.91%), Postives = 97/211 (45.97%), Query Frame = 1


Query: 16  KHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIK 75
           + + +R+I Q L+  G  ++   L  ESG   + +      + +  G W    + ++ +K
Sbjct: 52  EEDVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELK 111

Query: 76  DL--TDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFT 135
            L  +    V   FL+L+   LEY   G    AL +LR E     ++ D+IH L+  +  
Sbjct: 112 ALMHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMC 171

Query: 136 S--KNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCMYH 195
           S  +++      +      R +LL  L+  LPP   LP RRL+ L+   V  Q D C+YH
Sbjct: 172 SHAEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYH 231

Query: 196 NFS-----GAVSIYEDHCCGRDQIPTETIQV 218
           N        +VS+  DH C R Q P  T Q+
Sbjct: 232 NTKLDSSLDSVSLLLDHVCSRKQFPCYTQQI 262

[Close]

BLAST of CmoCh19G001400 vs. Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 54/213 (25.35%), Postives = 97/213 (45.54%), Query Frame = 1


Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           E +R+I Q L+  G  KS  +L  ESG   +          +  G+W      +  ++ L
Sbjct: 99  EIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPL 158

Query: 78  TDEVRVSAL----FLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFT 137
            D  +++ +    F++L+   LE+ + G+   AL +LR E      +  ++H+L+  +  
Sbjct: 159 IDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMC 218

Query: 138 SKNMNL----DYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCM 197
           S N +L     +    ++   R  ++  L+  +PP   +  RRL  L++  V  Q   C 
Sbjct: 219 STNQDLYQRAKWEGKGILS--RALVMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCP 278

Query: 198 YHNFSG-----AVSIYEDHCCGRDQIPTETIQV 218
            H+ +       VS+  DHCC  D  P +TIQ+
Sbjct: 279 CHDMAWETNLETVSLLTDHCCTTDGFPMQTIQI 309

[Close]

BLAST of CmoCh19G001400 vs. Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.04c PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-14
Identity = 51/200 (25.50%), Postives = 93/200 (46.50%), Query Frame = 1


Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           E + +++Q L  +GY +S  +LE E+G+  ++ D K L+  +  G+W       S ++  
Sbjct: 10  EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAFSIMQLR 69

Query: 78  TDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKLAYSIFTSKNM 137
            +  R  A FL+ K   LE +  G    A+ +L +      F+++K   ++  + ++   
Sbjct: 70  DESKRKEAQFLLQKQRCLELARSGAICEAIYVL-QNFESTDFNKEKERLVSIILESNNKS 129

Query: 138 NLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDSCMYHNFSGAV 197
           N +    +     R  LL  L + + P   LP RRLE L++     Q+ S +YHN     
Sbjct: 130 NNELITKNGYGNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVLKNF 189

Query: 198 SIYEDHCCGRDQIPTETIQV 218
           S   D+     ++PT+   V
Sbjct: 190 SFLSDYKADPSELPTKEYHV 208

[Close]

BLAST of CmoCh19G001400 vs. Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 61/225 (27.11%), Postives = 95/225 (42.22%), Query Frame = 1


Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           + +R+I Q L   G  ++   L  ESG   +        + +  G+W    + ++ +K L
Sbjct: 126 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPL 185

Query: 78  TDE------------------VRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHF 137
                                + V   FL+L+   LEY   G    AL +LR E     +
Sbjct: 186 VHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKY 245

Query: 138 SRDKIHKLAYSIFTS--KNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLV 197
           + ++IH L+  +  S  +++      +      R KLL  L+  LPP   LP RRL+ L+
Sbjct: 246 NTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLL 305

Query: 198 ETTVVAQIDSCMYHNFS-----GAVSIYEDHCCGRDQIPTETIQV 218
              V  Q D C+YHN        +VS+  DH C R Q P  T Q+
Sbjct: 306 RQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQI 350

[Close]

BLAST of CmoCh19G001400 vs. Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 61/225 (27.11%), Postives = 95/225 (42.22%), Query Frame = 1


Query: 18  EFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDL 77
           + +R+I Q L   G  ++   L  ESG   +        + +  G+W    + ++ +K L
Sbjct: 106 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPL 165

Query: 78  TDE------------------VRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHF 137
                                + V   FL+L+   LEY   G    AL +LR E     +
Sbjct: 166 VHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKY 225

Query: 138 SRDKIHKLAYSIFTS--KNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLV 197
           + ++IH L+  +  S  +++      +      R KLL  L+  LPP   LP RRL+ L+
Sbjct: 226 NTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLL 285

Query: 198 ETTVVAQIDSCMYHNFS-----GAVSIYEDHCCGRDQIPTETIQV 218
              V  Q D C+YHN        +VS+  DH C R Q P  T Q+
Sbjct: 286 RQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQI 330

[Close]

BLAST of CmoCh19G001400 vs. TrEMBL
Match: A0A0A0L8N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G611890 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 9.1e-118
Identity = 209/232 (90.09%), Postives = 224/232 (96.55%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSSVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLDYSND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDYSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLVFHVYTLNFH 233
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIML+  ++  +FH
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLI-SLFVFSFH 231

[Close]

BLAST of CmoCh19G001400 vs. TrEMBL
Match: A0A0B0MC67_GOSAR (WD repeat-containing 26 OS=Gossypium arboreum GN=F383_12740 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.0e-73
Identity = 135/217 (62.21%), Postives = 164/217 (75.58%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           ME+S   +GSKGLI KHEF+R+IIQCLYS GY+KSA  LE ESG+ YKS +F LLESQI 
Sbjct: 1   MENSPTTLGSKGLINKHEFLRVIIQCLYSLGYKKSASCLEIESGVRYKSIEFDLLESQIL 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SG+W  CIDT++ IKD+ D+ R S LFLV K C LEY N GDD+ AL++L+K  P  H S
Sbjct: 61  SGDWDDCIDTLNKIKDVKDDTRSSVLFLVFKQCFLEYLNRGDDSLALSVLQKRVPTLHMS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
            + +HKLAYSI   K M L   ++ VI ELRK+L+ +L K LPPP  LP+RRLE LVET+
Sbjct: 121 NETVHKLAYSILALKEMELGKLDEDVISELRKRLVMELGKQLPPPIVLPERRLEHLVETS 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V AQIDSC+YHN   AV +YEDHCCGRDQIPTET+Q+
Sbjct: 181 VTAQIDSCIYHNSQDAVLLYEDHCCGRDQIPTETVQI 217

[Close]

BLAST of CmoCh19G001400 vs. TrEMBL
Match: A0A0D2R8Z7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G222700 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 134/217 (61.75%), Postives = 164/217 (75.58%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           ME+S   +GSKGLI KHEF+R+IIQCLYS GY+KSA  LE ESG+ YKS +F LLESQI 
Sbjct: 1   MENSPTTLGSKGLINKHEFLRVIIQCLYSLGYKKSASCLEIESGVRYKSIEFDLLESQIL 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SG+W  CIDT++ IKD+ D+ R S LFLV K C LEY N GDD+ AL++L+K  P  H S
Sbjct: 61  SGDWDDCIDTLNKIKDVKDDTRSSVLFLVFKQCFLEYLNRGDDSLALSVLQKRVPTLHMS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
            + +HKLAY+I   K M L   ++ VI ELRK+L+ +L K LPPP  LP+RRLE LVET+
Sbjct: 121 NETVHKLAYNILALKEMELGKLDEDVISELRKRLVMELGKQLPPPIVLPERRLEHLVETS 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V AQIDSC+YHN   AV +YEDHCCGRDQIPTET+Q+
Sbjct: 181 VTAQIDSCIYHNSQDAVLLYEDHCCGRDQIPTETVQI 217

[Close]

BLAST of CmoCh19G001400 vs. TrEMBL
Match: B9T5V7_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0996060 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.8e-72
Identity = 133/217 (61.29%), Postives = 169/217 (77.88%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           ME+S+V+IG+KGLI++HEFVR+IIQ L+S GY+KSA  LE ESGISYKS DF+LLESQI 
Sbjct: 1   MENSTVVIGTKGLIKRHEFVRVIIQSLWSLGYKKSASCLEIESGISYKSVDFELLESQIL 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
            GNW GC++T++ +K+L DE R SALFLV+K CLLE  +CGDD+ ALA+LRK+ P     
Sbjct: 61  EGNWNGCVNTLNTVKELMDETRASALFLVIKQCLLECLSCGDDSMALAVLRKQVPALRLG 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           R+K+  LAY++   K ++L  + D+ I ELR  LL+ LEK LPPP  LP+ RLE LVET 
Sbjct: 121 REKVCNLAYNLLCLKEVDLSKTYDNAILELRNVLLKQLEKLLPPPIVLPEIRLEHLVETA 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           + AQIDSCMYHN   AVS++EDHCC RDQIPTET+Q+
Sbjct: 181 ITAQIDSCMYHNSQEAVSLFEDHCCKRDQIPTETVQI 217

[Close]

BLAST of CmoCh19G001400 vs. TrEMBL
Match: M5VZE1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004283mg PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.9e-71
Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 1


Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           +G KGLI+KHEFVRI+IQCLYS GY+KSA  LE ESGIS KS+DF+LLESQI SGNW GC
Sbjct: 7   LGPKGLIKKHEFVRILIQCLYSIGYEKSASCLELESGISCKSDDFQLLESQISSGNWDGC 66

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           +DT++ IKDLTD+ R +ALFLV K CLLEY +CGDD  A+A+L+KE       RDK+H L
Sbjct: 67  VDTLNAIKDLTDDTRAAALFLVFKQCLLEYLSCGDDKLAVAILQKEVSALQVDRDKVHNL 126

Query: 128 AYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDS 187
           A SI + K +     +D+ + ELRKKLL++LEK LP P  LP+ RLE LVET V++QI+S
Sbjct: 127 ARSILSWKEVEQSKIDDNAVRELRKKLLQELEKWLPSPITLPEHRLEHLVETAVLSQIES 186

Query: 188 CMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           CMYHN S  VS+Y DH C RDQIPTET+Q+
Sbjct: 187 CMYHNLSDEVSLYADHSCSRDQIPTETVQI 216

[Close]

BLAST of CmoCh19G001400 vs. TAIR10
Match: AT5G43920.1 (AT5G43920.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 234.6 bits (597), Expect = 6.4e-62
Identity = 112/212 (52.83%), Postives = 154/212 (72.64%), Query Frame = 1


Query: 7   LIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYG 66
           ++GSKGL++KHEF+RI++QCLYS G++ SA  LE ES I YK+ D + LE Q+ SGNW  
Sbjct: 8   VLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDS 67

Query: 67  CIDTISGIKDLT-DEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIH 126
           C+  +  I D + D+ R +AL+LV K CLLEY   GD + AL +LRK+AP+    ++KIH
Sbjct: 68  CVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIH 127

Query: 127 KLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQI 186
           +LA  I  SK M     ++ ++ +LR+KLL +LEK +P P  +P+RRLE LVET V+ QI
Sbjct: 128 RLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVETAVMDQI 187

Query: 187 DSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           D+CMYHN   AVS+Y+DHCCGRDQIP+ET+Q+
Sbjct: 188 DTCMYHNSCDAVSLYKDHCCGRDQIPSETVQI 219

[Close]

BLAST of CmoCh19G001400 vs. TAIR10
Match: AT5G08560.1 (AT5G08560.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-34
Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 1


Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           IGSKG+IRK EFVRII + LYS GY K+   LE ESGIS  ++  KL   Q+  G W   
Sbjct: 57  IGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQS 116

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           + T+  I    ++   +A FL+L+   LE+      A AL  LR E      +  ++H+L
Sbjct: 117 VKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHEL 176

Query: 128 AYSIFTSKNMNLDYSNDSVIHE---LRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQ 187
           A S+ +  +  + ++  +   E    R K+L +L+  LP    +P++RLE LVE ++  Q
Sbjct: 177 ASSLISPSSF-ISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQ 236

Query: 188 IDSCMYHN-FSGAVSIYEDHCCGRDQIPTETIQV 218
            DSC++HN     +S+Y DH CG+ QIP++T Q+
Sbjct: 237 RDSCVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269

[Close]

BLAST of CmoCh19G001400 vs. NCBI nr
Match: gi|700203182|gb|KGN58315.1| (hypothetical protein Csa_3G611890 [Cucumis sativus])

HSP 1 Score: 431.0 bits (1107), Expect = 1.3e-117
Identity = 209/232 (90.09%), Postives = 224/232 (96.55%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSSVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLDYSND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDYSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLVFHVYTLNFH 233
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIML+  ++  +FH
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQVHFIMLI-SLFVFSFH 231

[Close]

BLAST of CmoCh19G001400 vs. NCBI nr
Match: gi|778682010|ref|XP_011651627.1| (PREDICTED: WD repeat-containing protein 26 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 6.7e-114
Identity = 202/217 (93.09%), Postives = 213/217 (98.16%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESSSVL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSSVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLDYSND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDYSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 217

[Close]

BLAST of CmoCh19G001400 vs. NCBI nr
Match: gi|659093074|ref|XP_008447357.1| (PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 26 [Cucumis melo])

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112
Identity = 200/217 (92.17%), Postives = 212/217 (97.70%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           MESS+VL+GSKGLIRKHEFVR+IIQCLYSFGYQKSAL LE+ESGISYKS+DFKLLESQIF
Sbjct: 1   MESSAVLLGSKGLIRKHEFVRVIIQCLYSFGYQKSALCLEAESGISYKSSDFKLLESQIF 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SGNWYGCIDTI+GIK LTD+VRVS LFLVLKHCLLEYSNCGDDASALAMLRKEAP+FHFS
Sbjct: 61  SGNWYGCIDTINGIKGLTDDVRVSTLFLVLKHCLLEYSNCGDDASALAMLRKEAPIFHFS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
           +DKIHKLAYSIFTSK+MNLD SND+VIHELRKKLLRDLEK LPPPTCLPDRRLEQLVETT
Sbjct: 121 KDKIHKLAYSIFTSKDMNLDCSNDNVIHELRKKLLRDLEKTLPPPTCLPDRRLEQLVETT 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V+AQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV
Sbjct: 181 VMAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 217

[Close]

BLAST of CmoCh19G001400 vs. NCBI nr
Match: gi|694314346|ref|XP_009370775.1| (PREDICTED: WD repeat-containing protein 26 [Pyrus x bretschneideri])

HSP 1 Score: 282.7 bits (722), Expect = 5.8e-73
Identity = 139/210 (66.19%), Postives = 161/210 (76.67%), Query Frame = 1


Query: 8   IGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIFSGNWYGC 67
           +GSKGLIRKHEFVRIIIQCL S GY+KSA  LE ESGIS KSNDF+ LESQI SGNW GC
Sbjct: 7   LGSKGLIRKHEFVRIIIQCLLSIGYEKSASCLELESGISCKSNDFQTLESQISSGNWDGC 66

Query: 68  IDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFSRDKIHKL 127
           +DT++ I DLTD+ R +ALFLV K CLLE   CGDD  ALA+L+KE    H  R K+H L
Sbjct: 67  VDTLNTINDLTDDTRAAALFLVFKQCLLESLKCGDDKLALAILQKEVSTLHVDRGKVHNL 126

Query: 128 AYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETTVVAQIDS 187
           A SI +SK M     +D  + ELRKKLL++LEK LPPP  LP+ RLE LVET V++QIDS
Sbjct: 127 ARSILSSKEMEQSKIDDIAVCELRKKLLQELEKLLPPPITLPENRLEHLVETAVLSQIDS 186

Query: 188 CMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           CMYHN S AVS+Y DH CGRDQIPTET+Q+
Sbjct: 187 CMYHNLSDAVSLYADHFCGRDQIPTETVQI 216

[Close]

BLAST of CmoCh19G001400 vs. NCBI nr
Match: gi|728808510|gb|KHF98324.1| (WD repeat-containing 26 [Gossypium arboreum])

HSP 1 Score: 281.6 bits (719), Expect = 1.3e-72
Identity = 135/217 (62.21%), Postives = 164/217 (75.58%), Query Frame = 1


Query: 1   MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALSLESESGISYKSNDFKLLESQIF 60
           ME+S   +GSKGLI KHEF+R+IIQCLYS GY+KSA  LE ESG+ YKS +F LLESQI 
Sbjct: 1   MENSPTTLGSKGLINKHEFLRVIIQCLYSLGYKKSASCLEIESGVRYKSIEFDLLESQIL 60

Query: 61  SGNWYGCIDTISGIKDLTDEVRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFHFS 120
           SG+W  CIDT++ IKD+ D+ R S LFLV K C LEY N GDD+ AL++L+K  P  H S
Sbjct: 61  SGDWDDCIDTLNKIKDVKDDTRSSVLFLVFKQCFLEYLNRGDDSLALSVLQKRVPTLHMS 120

Query: 121 RDKIHKLAYSIFTSKNMNLDYSNDSVIHELRKKLLRDLEKALPPPTCLPDRRLEQLVETT 180
            + +HKLAYSI   K M L   ++ VI ELRK+L+ +L K LPPP  LP+RRLE LVET+
Sbjct: 121 NETVHKLAYSILALKEMELGKLDEDVISELRKRLVMELGKQLPPPIVLPERRLEHLVETS 180

Query: 181 VVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQV 218
           V AQIDSC+YHN   AV +YEDHCCGRDQIPTET+Q+
Sbjct: 181 VTAQIDSCIYHNSQDAVLLYEDHCCGRDQIPTETVQI 217

The following BLAST results are available for this feature:

BLAST of CmoCh19G001400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WDR26_DANRE	8.5e-16	28.91	WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1	[more]
WDR26_DROME	1.2e-14	25.35	WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=...	[more]
YIPC_SCHPO	6.1e-14	25.50	Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pom...	[more]
WDR26_HUMAN	1.8e-13	27.11	WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3	[more]
WDR26_MOUSE	1.8e-13	27.11	WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=3	[more]

BLAST of CmoCh19G001400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8N6_CUCSA	9.1e-118	90.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G611890 PE=4 SV=1	[more]
A0A0B0MC67_GOSAR	9.0e-73	62.21	WD repeat-containing 26 OS=Gossypium arboreum GN=F383_12740 PE=4 SV=1	[more]
A0A0D2R8Z7_GOSRA	2.0e-72	61.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G222700 PE=4 SV=1	[more]
B9T5V7_RICCO	5.8e-72	61.29	WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0996060 PE=4 SV=1	[more]
M5VZE1_PRUPE	4.9e-71	62.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004283mg PE=4 SV=1	[more]

BLAST of CmoCh19G001400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43920.1	6.4e-62	52.83	transducin family protein / WD-40 repeat family protein	[more]
AT5G08560.1	3.3e-34	37.85	transducin family protein / WD-40 repeat family protein	[more]

BLAST of CmoCh19G001400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203182\|gb\|KGN58315.1\|	1.3e-117	90.09	hypothetical protein Csa_3G611890 [Cucumis sativus]	[more]
gi\|778682010\|ref\|XP_011651627.1\|	6.7e-114	93.09	PREDICTED: WD repeat-containing protein 26 [Cucumis sativus]	[more]
gi\|659093074\|ref\|XP_008447357.1\|	1.7e-112	92.17	PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 26 [Cucumis melo]	[more]
gi\|694314346\|ref\|XP_009370775.1\|	5.8e-73	66.19	PREDICTED: WD repeat-containing protein 26 [Pyrus x bretschneideri]	[more]
gi\|728808510\|gb\|KHF98324.1\|	1.3e-72	62.21	WD repeat-containing 26 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006594	LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0035023	regulation of Rho protein signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005089	Rho guanyl-nucleotide exchange factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001400.1	CmoCh19G001400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 15..47 score: 0.
IPR006594	LIS1 homology motif	PROFILE	PS50896	LISH	coord: 15..47 score: 9
None	No IPR available	PANTHER	PTHR22838	WD REPEAT PROTEIN 26-RELATED	coord: 1..217 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G001400	Cucsa.140560	Cucumber (Gy14) v1	cgycmoB0391
CmoCh19G001400	Csa3G611890	Cucumber (Chinese Long) v2	cmocuB500
CmoCh19G001400	CSPI03G27000	Wild cucumber (PI 183967)	cmocpiB506
CmoCh19G001400	CsGy3G025170	Cucumber (Gy14) v2	cgybcmoB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G001400	Watermelon (97103) v2	cmowmbB518
CmoCh19G001400	Watermelon (97103) v2	cmowmbB520
CmoCh19G001400	Watermelon (97103) v2	cmowmbB521
CmoCh19G001400	Wax gourd	cmowgoB0637
CmoCh19G001400	Wax gourd	cmowgoB0654
CmoCh19G001400	Cucurbita moschata (Rifu)	cmocmoB300
CmoCh19G001400	Cucurbita moschata (Rifu)	cmocmoB387
CmoCh19G001400	Cucumber (Gy14) v1	cgycmoB0710
CmoCh19G001400	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G001400	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G001400	Wild cucumber (PI 183967)	cmocpiB513
CmoCh19G001400	Melon (DHL92) v3.5.1	cmomeB461
CmoCh19G001400	Watermelon (Charleston Gray)	cmowcgB463
CmoCh19G001400	Watermelon (Charleston Gray)	cmowcgB466
CmoCh19G001400	Watermelon (97103) v1	cmowmB485
CmoCh19G001400	Watermelon (97103) v1	cmowmB489
CmoCh19G001400	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G001400	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G001400	Bottle gourd (USVL1VR-Ls)	cmolsiB470
CmoCh19G001400	Bottle gourd (USVL1VR-Ls)	cmolsiB471
CmoCh19G001400	Cucumber (Gy14) v2	cgybcmoB358
CmoCh19G001400	Melon (DHL92) v3.6.1	cmomedB532
CmoCh19G001400	Melon (DHL92) v3.6.1	cmomedB546
CmoCh19G001400	Silver-seed gourd	carcmoB0330
CmoCh19G001400	Silver-seed gourd	carcmoB1021
CmoCh19G001400	Silver-seed gourd	carcmoB1055
CmoCh19G001400	Cucumber (Chinese Long) v3	cmocucB0598
CmoCh19G001400	Cucumber (Chinese Long) v3	cmocucB0608