CmoCh19G000820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G000820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 451789 .. 452079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTGCATTCCTTTTGCCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCCGTTCCTCCCAATGCCAAAAATGGCGGCACTACTATTCCGACACCGCTCGGACAAAGAGCTTTCGTCGGAAAATCAACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCGGCCATGAAGACGAACTAA

mRNA sequence

ATGAAGATCCAATTTGCATTCCTTTTGCCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCCGTTCCTCCCAATGCCAAAAATGGCGGCACTACTATTCCGACACCGCTCGGACAAAGAGCTTTCGTCGGAAAATCAACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCGGCCATGAAGACGAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTTGCATTCCTTTTGCCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCCGTTCCTCCCAATGCCAAAAATGGCGGCACTACTATTCCGACACCGCTCGGACAAAGAGCTTTCGTCGGAAAATCAACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCGGCCATGAAGACGAACTAA
Homology
[Close]
BLAST of CmoCh19G000820 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 1  MKIQFAFLLPILVVLANAHQLQSCRTMKEDPQKWSI--LLLQQSLQRAPVPPNAKNGGTT 60
          MKIQF+FLL ILV+LAN H LQSCRT+K+D Q WSI   LLQQSLQR PVPP+AKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPTPLGQRAFVGKSTPSPAHSY 81
          IP P+GQRAF GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

[Close]
BLAST of CmoCh19G000820 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 9.4e-22
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 1  MKIQFAFLLPILVVLANAHQLQSCRTMKEDPQKWSI--LLLQQSLQRAPVPPNAKNGGTT 60
          MKIQF+FLL ILV+LAN H LQSCRT+K+D Q WSI   LLQQSLQR PVPP+AKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPTPLGQRAFVGKSTPSPAHSY 81
          IP P+GQRAF GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
BLAST of CmoCh19G000820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G000820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA6.6e-2268.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of CmoCh19G000820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G000820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|9.4e-2268.29hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G000820.1CmoCh19G000820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G000820Wild cucumber (PI 183967)cmocpiB513
CmoCh19G000820Watermelon (Charleston Gray)cmowcgB466
CmoCh19G000820Watermelon (97103) v1cmowmB485
CmoCh19G000820Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G000820Cucurbita pepo (Zucchini)cmocpeB498
CmoCh19G000820Bottle gourd (USVL1VR-Ls)cmolsiB470
CmoCh19G000820Melon (DHL92) v3.6.1cmomedB546
CmoCh19G000820Silver-seed gourdcarcmoB1021
CmoCh19G000820Silver-seed gourdcarcmoB1055
CmoCh19G000820Silver-seed gourdcarcmoB1286
CmoCh19G000820Cucumber (Chinese Long) v3cmocucB0606
CmoCh19G000820Watermelon (97103) v2cmowmbB521
CmoCh19G000820Wax gourdcmowgoB0654
CmoCh19G000820Cucurbita moschata (Rifu)cmocmoB387
CmoCh19G000820Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G000820Cucurbita maxima (Rimu)cmacmoB598