CmoCh18G012460 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G012460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	4-hydroxy-tetrahydrodipicolinate reductase
Location	Cmo_Chr18 : 12262957 .. 12263800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTTCTGGAGAGGTAAGTTCTAGCTCGTGTTTCTGTTCTTATCTAACTAACATTAGGGAAGTTGCAAGCCACTCATTCAACAACCAGAATGGTTGTTGAGAGGGAGTTTCATGTTGGCTAATTAAGGAGATGATTATGGATTTATAACTAAGGAATACATCTCCTTGATAAGCAAAGTCATGAGAGCTTGTGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTTGTGGTTCCTAACATCTGCAATCAAAGTGGTAGGTGTTTTCCTTCCCCAACACGTATCATGGTTTGCACCACAGGTTTACACTCTCAAACATGATGTTACAAATGTGCAATGTCTAGTACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTAAGGTACCTAAACACACGTCAGTATATGCACCTCAAATTTTCTTGAATGATCTTCATCCTGTATTGTGTCAAACTATCGCCTTTCTGTGCTACTTTGGCAGAATCTGGTATACGGCTGGGAGAAATTTTTAGAAGGCTTCGAAGGCTCTCTCCTAGTAGCTCAATCTGAAACTTCATCTCCGTTGTTCATTGGACGGAGTGACCTTTCGACCTGATAACAAAAAGAAGAGTCAGGAGCTCAAGTTAGAGAGAATTGAAAGATAACTTTTTGTTTTTCATTTTCCTTGTGTACATGGAGAAATTAAATTATAGTTCTTAAAGAAGGGTACCTCTAAAAAGGGTCACTGTGATACTTGTATGACCTCATTTGTTCTTCATATATTCTTTCATGTACATTTTTCTTCGCGCAAACATACAGATTCTAATAGATTCTTACATTTTCACCCCAACAAA

mRNA sequence

ATGTCTACTTCTGGAGAGGTTTACACTCTCAAACATGATGTTACAAATGTGCAATGTCTAGTACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTAAGAATCTGGTATACGGCTGGGAGAAATTTTTAGAAGGCTTCGAAGGCTCTCTCCTAGTAGCTCAATCTGAAACTTCATCTCCGTTGTTCATTGGACGGAGTGACCTTTCGACCTGATAACAAAAAGAAGAGTCAGGAGCTCAAGTTAGAGAGAATTGAAAGATAACTTTTTGTTTTTCATTTTCCTTGTGTACATGGAGAAATTAAATTATAGTTCTTAAAGAAGGGTACCTCTAAAAAGGGTCACTGTGATACTTGTATGACCTCATTTGTTCTTCATATATTCTTTCATGTACATTTTTCTTCGCGCAAACATACAGATTCTAATAGATTCTTACATTTTCACCCCAACAAA

Coding sequence (CDS)

ATGTCTACTTCTGGAGAGGTTTACACTCTCAAACATGATGTTACAAATGTGCAATGTCTAGTACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTAAGAATCTGGTATACGGCTGGGAGAAATTTTTAGAAGGCTTCGAAGGCTCTCTCCTAGTAGCTCAATCTGAAACTTCATCTCCGTTGTTCATTGGACGGAGTGACCTTTCGACCTGA

Homology

[Close]

BLAST of CmoCh18G012460 vs. Swiss-Prot
Match: DAPB3_ARATH (Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-11
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S+ G+VYT+KHD+ +V+ L+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 255 SSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEKFL 298

[Close]

BLAST of CmoCh18G012460 vs. Swiss-Prot
Match: DAPB_ANAVT (4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 5   GEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           G++YTL+HD ++  C +PG+LLAIRKV++LK+LVYG EK L
Sbjct: 238 GQIYTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278

[Close]

BLAST of CmoCh18G012460 vs. Swiss-Prot
Match: DAPB_THEEB (4-hydroxy-tetrahydrodipicolinate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapB PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 5   GEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           G++YTL+HD ++ QC +PG+LLAIRKV +LK L+YG EK L
Sbjct: 236 GQIYTLRHDTSDRQCYMPGVLLAIRKVRQLKRLIYGLEKLL 276

[Close]

BLAST of CmoCh18G012460 vs. Swiss-Prot
Match: DAPB_NOSS1 (4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 5   GEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           G++YTL+HD ++  C +PG+LLAIRKV++LK+LVYG EK L
Sbjct: 238 GQIYTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278

[Close]

BLAST of CmoCh18G012460 vs. Swiss-Prot
Match: DAPB_NOSP7 (4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-08
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 4   SGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           +G++YTL+HD ++  C +PG+LLAIRKV+ LK+LVYG EK L
Sbjct: 237 AGQIYTLRHDTSDRACYMPGVLLAIRKVLALKSLVYGLEKIL 278

[Close]

BLAST of CmoCh18G012460 vs. TrEMBL
Match: A0A0F7H0U3_ACOAM (Dihydrodipicolinate reductase-like protein (Fragment) OS=Acorus americanus GN=CRR1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYT+KHD+TNVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 221 SGPGEVYTIKHDITNVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 264

[Close]

BLAST of CmoCh18G012460 vs. TrEMBL
Match: A0A0A0L5T6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180330 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYTLKHD+ NVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 257 SRPGEVYTLKHDIINVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 300

[Close]

BLAST of CmoCh18G012460 vs. TrEMBL
Match: C7J0J7_ORYSJ (Os03g0117000 protein OS=Oryza sativa subsp. japonica GN=Os03g0117000 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GE+YTL+HDVTNVQCL+PGL+LAIRKVVRLKNL+YG EKFL
Sbjct: 276 SGPGEIYTLRHDVTNVQCLMPGLILAIRKVVRLKNLIYGLEKFL 319

[Close]

BLAST of CmoCh18G012460 vs. TrEMBL
Match: A0A0V0IQB2_SOLCH (Putative dihydrodipicolinate reductase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-12
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYTLKHD+T+VQCL+PGL+LAIRKVVRLKNLVYG EKFL
Sbjct: 197 SRPGEVYTLKHDITDVQCLMPGLILAIRKVVRLKNLVYGLEKFL 240

[Close]

BLAST of CmoCh18G012460 vs. TrEMBL
Match: A0A0D9Z184_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GE+YTL+HDVTNVQCL+PGL+LAIRKVVRLKNL+YG EKFL
Sbjct: 222 SGPGEIYTLRHDVTNVQCLMPGLILAIRKVVRLKNLIYGLEKFL 265

[Close]

BLAST of CmoCh18G012460 vs. TAIR10
Match: AT5G52100.1 (AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant)

HSP 1 Score: 70.1 bits (170), Expect = 6.4e-13
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S+ G+VYT+KHD+ +V+ L+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 255 SSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEKFL 298

[Close]

BLAST of CmoCh18G012460 vs. NCBI nr
Match: gi|449446063|ref|XP_004140791.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYTLKHD+ NVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 257 SRPGEVYTLKHDIINVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 300

[Close]

BLAST of CmoCh18G012460 vs. NCBI nr
Match: gi|1012243841|ref|XP_015941628.1| (PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Arachis duranensis])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GE+Y++KHD+TNVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 264 SAPGEIYSIKHDITNVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 307

[Close]

BLAST of CmoCh18G012460 vs. NCBI nr
Match: gi|659077385|ref|XP_008439177.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYTLKHD+ NVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 257 SRPGEVYTLKHDIINVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 300

[Close]

BLAST of CmoCh18G012460 vs. NCBI nr
Match: gi|1021569809|ref|XP_016176106.1| (PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Arachis ipaensis])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GE+Y++KHD+TNVQCL+PGLLLAIRKVVRLKNLVYG EKFL
Sbjct: 264 SAPGEIYSIKHDITNVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 307

[Close]

BLAST of CmoCh18G012460 vs. NCBI nr
Match: gi|970019321|ref|XP_015070860.1| (PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X2 [Solanum pennellii])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-12
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 2   STSGEVYTLKHDVTNVQCLVPGLLLAIRKVVRLKNLVYGWEKFL 46
           S  GEVYTLKHD+T+VQCL+PGL+LAIRKVVRLKNLVYG EKFL
Sbjct: 215 SRPGEVYTLKHDITDVQCLMPGLILAIRKVVRLKNLVYGLEKFL 258

The following BLAST results are available for this feature:

BLAST of CmoCh18G012460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DAPB3_ARATH	1.1e-11	75.00	Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis th...	[more]
DAPB_ANAVT	4.4e-08	60.98	4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 2...	[more]
DAPB_THEEB	4.4e-08	60.98	4-hydroxy-tetrahydrodipicolinate reductase OS=Thermosynechococcus elongatus (str...	[more]
DAPB_NOSS1	4.4e-08	60.98	4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX...	[more]
DAPB_NOSP7	5.8e-08	59.52	4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29...	[more]

BLAST of CmoCh18G012460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0F7H0U3_ACOAM	1.2e-12	86.36	Dihydrodipicolinate reductase-like protein (Fragment) OS=Acorus americanus GN=CR...	[more]
A0A0A0L5T6_CUCSA	2.7e-12	86.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180330 PE=4 SV=1	[more]
C7J0J7_ORYSJ	3.5e-12	81.82	Os03g0117000 protein OS=Oryza sativa subsp. japonica GN=Os03g0117000 PE=4 SV=1	[more]
A0A0V0IQB2_SOLCH	3.5e-12	84.09	Putative dihydrodipicolinate reductase-like OS=Solanum chacoense PE=4 SV=1	[more]
A0A0D9Z184_9ORYZ	3.5e-12	81.82	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]

BLAST of CmoCh18G012460 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52100.1	6.4e-13	75.00	Dihydrodipicolinate reductase, bacterial/plant	[more]

BLAST of CmoCh18G012460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446063\|ref\|XP_004140791.1\|	3.9e-12	86.36	PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ...	[more]
gi\|1012243841\|ref\|XP_015941628.1\|	3.9e-12	81.82	PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Arach...	[more]
gi\|659077385\|ref\|XP_008439177.1\|	3.9e-12	86.36	PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ...	[more]
gi\|1021569809\|ref\|XP_016176106.1\|	3.9e-12	81.82	PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Arach...	[more]
gi\|970019321\|ref\|XP_015070860.1\|	5.1e-12	84.09	PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic isofor...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023940	DHDPR_bac

Vocabulary: **Molecular Function**
Term	Definition
GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase

Vocabulary: **Biological Process**
Term	Definition
GO:0009089	lysine biosynthetic process via diaminopimelate
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0016556	mRNA modification
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012460.1	CmoCh18G012460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023940	Dihydrodipicolinate reductase	PANTHER	PTHR20836	DIHYDRODIPICOLINATE REDUCTASE	coord: 1..53 score: 2.0
None	No IPR available	PANTHER	PTHR20836:SF2	4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 3, CHLOROPLASTIC-RELATED	coord: 1..53 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G012460	Cp4.1LG14g05830	Cucurbita pepo (Zucchini)	cmocpeB386
CmoCh18G012460	Carg16698	Silver-seed gourd	carcmoB1176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G012460	Cucurbita moschata (Rifu)	cmocmoB242
CmoCh18G012460	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh18G012460	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh18G012460	Cucumber (Gy14) v1	cgycmoB0709
CmoCh18G012460	Cucurbita maxima (Rimu)	cmacmoB327
CmoCh18G012460	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G012460	Cucurbita maxima (Rimu)	cmacmoB591
CmoCh18G012460	Wild cucumber (PI 183967)	cmocpiB401
CmoCh18G012460	Wild cucumber (PI 183967)	cmocpiB416
CmoCh18G012460	Cucumber (Chinese Long) v2	cmocuB398
CmoCh18G012460	Cucumber (Chinese Long) v2	cmocuB411
CmoCh18G012460	Melon (DHL92) v3.5.1	cmomeB343
CmoCh18G012460	Melon (DHL92) v3.5.1	cmomeB368
CmoCh18G012460	Watermelon (Charleston Gray)	cmowcgB348
CmoCh18G012460	Watermelon (Charleston Gray)	cmowcgB359
CmoCh18G012460	Watermelon (97103) v1	cmowmB366
CmoCh18G012460	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G012460	Cucurbita pepo (Zucchini)	cmocpeB414
CmoCh18G012460	Bottle gourd (USVL1VR-Ls)	cmolsiB353
CmoCh18G012460	Bottle gourd (USVL1VR-Ls)	cmolsiB372
CmoCh18G012460	Cucumber (Gy14) v2	cgybcmoB324
CmoCh18G012460	Cucumber (Gy14) v2	cgybcmoB606
CmoCh18G012460	Melon (DHL92) v3.6.1	cmomedB392
CmoCh18G012460	Melon (DHL92) v3.6.1	cmomedB421
CmoCh18G012460	Silver-seed gourd	carcmoB0011
CmoCh18G012460	Silver-seed gourd	carcmoB0968
CmoCh18G012460	Silver-seed gourd	carcmoB1234
CmoCh18G012460	Silver-seed gourd	carcmoB1253
CmoCh18G012460	Cucumber (Chinese Long) v3	cmocucB0476
CmoCh18G012460	Cucumber (Chinese Long) v3	cmocucB0491
CmoCh18G012460	Watermelon (97103) v2	cmowmbB387
CmoCh18G012460	Watermelon (97103) v2	cmowmbB404
CmoCh18G012460	Wax gourd	cmowgoB0500
CmoCh18G012460	Wax gourd	cmowgoB0506