CmoCh18G012040 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G012040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription factor Homeobox
Location	Cmo_Chr18 : 12018301 .. 12019067 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAATATCTCCCTACCTCTCTCCCTCCCCACCAATTTTTTTTGTCGCAAGTTTCTTTAGCATTTGCATGTTCTTCATTTCTTCAACCAAGAAACCTTCTCCATTTGACAATCCCGGATGCACCCATTTCCCAGTTATGAATTCTGATACTCCCCCTTCTCTTTCCAGCCCCAATTCCTTCTCTTCCATGGAAAAGAAAAGAAGGCTCACACCGGATCAACTTCGGCTGCTCGAGACCAGCTTTGATGTTCACAACAAGCTCGAACATGACAGGAAGCTTCAAATTGCAGAGGAGATTGGCTTGCGGCCTCGCCAAGTTGCGGTTTGGTTCCAGAATCGAAGGGCTCGATCCAAGACCAAGAAAATTGTGTTTGATTATGATTCTTTGAATTCTCAATATCAAAACCTCAAGAATGAGTTTGACAGTCTTGTTAAGCTGAATCAAGAACTGAAAACAGAGGTATGGCATTCAAACTTCCAGATCTGTAATGGGTTTTCTCTAAAACTACTGATTTTTGTAATAGGTTGATGAACTAAGAGAAAAATGGGCTGCCATTGAGAAGATGAAGAACCCCTTTGAACCAGATGAACTTGAAGCCATGGATTCATCAGTTACAGAGCTACTTGGGGAAAGCTTCCTGCAAGATGAAGAAGATGAATTAGGCTACTTGGGGAAGCTAGAAGATGAACTTTCAGCTAATGAATTCATGGATTCGTTTGATATTTGTGCTTCTGGTCTTATTGATTTCAAGTATGATTCTCAGTGA

mRNA sequence

ACAAATATCTCCCTACCTCTCTCCCTCCCCACCAATTTTTTTTGTCGCAAGTTTCTTTAGCATTTGCATGTTCTTCATTTCTTCAACCAAGAAACCTTCTCCATTTGACAATCCCGGATGCACCCATTTCCCAGTTATGAATTCTGATACTCCCCCTTCTCTTTCCAGCCCCAATTCCTTCTCTTCCATGGAAAAGAAAAGAAGGCTCACACCGGATCAACTTCGGCTGCTCGAGACCAGCTTTGATGTTCACAACAAGCTCGAACATGACAGGAAGCTTCAAATTGCAGAGGAGATTGGCTTGCGGCCTCGCCAAGTTGCGGTTTGGTTCCAGAATCGAAGGGCTCGATCCAAGACCAAGAAAATTGTGTTTGATTATGATTCTTTGAATTCTCAATATCAAAACCTCAAGAATGAGTTTGACAGTCTTGTTAAGCTGAATCAAGAACTGAAAACAGAGGTTGATGAACTAAGAGAAAAATGGGCTGCCATTGAGAAGATGAAGAACCCCTTTGAACCAGATGAACTTGAAGCCATGGATTCATCAGTTACAGAGCTACTTGGGGAAAGCTTCCTGCAAGATGAAGAAGATGAATTAGGCTACTTGGGGAAGCTAGAAGATGAACTTTCAGCTAATGAATTCATGGATTCGTTTGATATTTGTGCTTCTGGTCTTATTGATTTCAAGTATGATTCTCAGTGA

Coding sequence (CDS)

ATGTTCTTCATTTCTTCAACCAAGAAACCTTCTCCATTTGACAATCCCGGATGCACCCATTTCCCAGTTATGAATTCTGATACTCCCCCTTCTCTTTCCAGCCCCAATTCCTTCTCTTCCATGGAAAAGAAAAGAAGGCTCACACCGGATCAACTTCGGCTGCTCGAGACCAGCTTTGATGTTCACAACAAGCTCGAACATGACAGGAAGCTTCAAATTGCAGAGGAGATTGGCTTGCGGCCTCGCCAAGTTGCGGTTTGGTTCCAGAATCGAAGGGCTCGATCCAAGACCAAGAAAATTGTGTTTGATTATGATTCTTTGAATTCTCAATATCAAAACCTCAAGAATGAGTTTGACAGTCTTGTTAAGCTGAATCAAGAACTGAAAACAGAGGTTGATGAACTAAGAGAAAAATGGGCTGCCATTGAGAAGATGAAGAACCCCTTTGAACCAGATGAACTTGAAGCCATGGATTCATCAGTTACAGAGCTACTTGGGGAAAGCTTCCTGCAAGATGAAGAAGATGAATTAGGCTACTTGGGGAAGCTAGAAGATGAACTTTCAGCTAATGAATTCATGGATTCGTTTGATATTTGTGCTTCTGGTCTTATTGATTTCAAGTATGATTCTCAGTGA

Homology

[Close]

BLAST of CmoCh18G012040 vs. Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.6e-24
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRLT +Q+ LLE SF+  NKLE +RK Q+A+++GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 67  EKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 126

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNP-----FEPDELEA 161
            DYD L S Y  L + +DS+V  N +L++EV  L EK    ++  N       EP++L+ 
Sbjct: 127 RDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPPGQVPEPNQLDP 186

Query: 162 MDSSVTELLGESFLQDEEDELGYLGKLEDELSANEFMDSFD 198
           +  +   +  E  L       G +G    +  A + +DS D
Sbjct: 187 VYINAAAIKTEDRLSS-----GSVGSAVLDDDAPQLLDSCD 222

[Close]

BLAST of CmoCh18G012040 vs. Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.4e-23
Identity = 76/167 (45.51%), Postives = 100/167 (59.88%), Query Frame = 1


Query: 43  KKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVF 102
           KKR+LTP QLRLLE SF+   +LE DRKL +AE++GL+P QVAVWFQNRRAR KTK++  
Sbjct: 68  KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEH 127

Query: 103 DYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSVT 162
           D DSL + Y  LK ++D L   NQ LK++VD L+EK     KM+   E   +E       
Sbjct: 128 DCDSLKASYAKLKTDWDILFVQNQTLKSKVDLLKEKL----KMQENLETQSIE------R 187

Query: 163 ELLGESFLQDEEDELGYLGKLEDELSANEFMDSFDICASGLIDFKYD 210
           + LGE     + D   Y    E+E   N++  SF   A  ++ F YD
Sbjct: 188 KRLGEEGSSVKSDNTQY---SEEEGLENQY--SFPELA--VLGFYYD 217

[Close]

BLAST of CmoCh18G012040 vs. Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 9.3e-22
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL  DQ++ LE +F++ NKLE +RK ++A+E+GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 58  EKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLE 117

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK 139
            DY  L  QY +L++ FDSL + N  L  E+ +++ K
Sbjct: 118 KDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAK 154

[Close]

BLAST of CmoCh18G012040 vs. Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-21
Identity = 51/97 (52.58%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL  +QL+ LE  F++ NKLE DRKL++A  +GL+PRQ+A+WFQNRRARSKTK++ 
Sbjct: 70  EKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLE 129

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK 139
            DYD L  Q+++L++E + L   NQ+L+ +V  L+ +
Sbjct: 130 KDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSR 166

[Close]

BLAST of CmoCh18G012040 vs. Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 65/157 (41.40%), Postives = 103/157 (65.61%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL+ +Q++ LE +F++ NKLE +RK+++A+E+GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 61  EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 120

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSV 161
            DY  L +QY +L++ FDSL + N+ L  E+ +L+       K+      +E E  +++V
Sbjct: 121 KDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLK------TKLNGGGGEEEEEENNAAV 180

Query: 162 TELLGESFLQDEEDELGYLGKL-EDELSANEFMDSFD 198
           T    ES +  +E+E+    K+ E   S  +F++  D
Sbjct: 181 TT---ESDISVKEEEVSLPEKITEAPSSPPQFLEHSD 208

[Close]

BLAST of CmoCh18G012040 vs. TrEMBL
Match: A0A0A0KVU6_CUCSA (Homeobox protein OS=Cucumis sativus GN=Csa_5G604260 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-41
Identity = 118/245 (48.16%), Postives = 148/245 (60.41%), Query Frame = 1


Query: 24  MNSDTPPSLSSP-----------NSFSSME--------KKRRLTPDQLRLLETSFDVHNK 83
           M+S+T   LS P           +S SSM+        KKRRL+ DQ+RLLE +F+  NK
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENK 60

Query: 84  LEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVFDYDSLNSQYQNLKNEFDSLVKL 143
           LEH+RK+QIAEEIGLRPRQVAVWFQNRRARSK K+I  DY+ L+++Y  LK++FDSL+ +
Sbjct: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNM 120

Query: 144 NQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSVTEL-------LGESFL------- 203
           N ELK EVD+LR  WAA+EKMKN FEP  +EAMDSSVT+L       +GE          
Sbjct: 121 NHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSS 180

[Close]

BLAST of CmoCh18G012040 vs. TrEMBL
Match: A0A103XSK1_CYNCS (Homeobox, conserved site-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_001800 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 38  FSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKT 97
           F   EKKRRL+ DQ++ LE SF+  NKLE DRK+Q+A+E+ L+PRQVA+WFQNRRAR KT
Sbjct: 58  FRPTEKKRRLSVDQVQFLERSFEEENKLEPDRKIQLAKELNLQPRQVAIWFQNRRARCKT 117

Query: 98  KKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDEL--E 157
           K++  DY+ LNS Y  LK+EFD L K N +LK EV+ L+EK    EK +    P+E   E
Sbjct: 118 KQLEKDYEILNSSYDKLKSEFDCLQKHNDKLKHEVEMLKEKLHQREKGEKDSIPNEFPTE 177

Query: 158 AMDSSVTE 164
            +DS+  E
Sbjct: 178 ELDSNAQE 185

[Close]

BLAST of CmoCh18G012040 vs. TrEMBL
Match: A0A022Q5I2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012337mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1


Query: 37  SFSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSK 96
           SF   EKKRRL PDQ+R LE SFD+ NKLE DRK+Q+A+E+GL+PRQVA+WFQNRRAR K
Sbjct: 44  SFHQSEKKRRLKPDQVRFLEKSFDLENKLEPDRKIQLAKEVGLQPRQVAIWFQNRRARYK 103

Query: 97  TKKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKM-----KNPFEP 156
           TK +  ++ SL + Y  LK E+D++   NQ+LK EV+ LREK    E+      K PF  
Sbjct: 104 TKILEKEHSSLKANYDKLKQEYDAVFAQNQKLKDEVNLLREKVVVKEECDNFEEKTPFLC 163

Query: 157 DELEAMDSSVTELLGESFLQDEEDELGYLGKLEDELSANEF 193
            ++EA  ++      +++  D  +         D LS +EF
Sbjct: 164 GDIEAAAATSDVFDSDNYSSDVFE--------TDNLSVSEF 196

[Close]

BLAST of CmoCh18G012040 vs. TrEMBL
Match: A0A068U1T9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039421001 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-25
Identity = 60/97 (61.86%), Postives = 80/97 (82.47%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRLTP+Q+ LLE SF+  NKLE +RK Q+A+++GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 63  EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 122

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK 139
            DYD + S Y +L++++DS+VK N++LKTEV  L EK
Sbjct: 123 RDYDQVKSSYDSLRSDYDSVVKENEKLKTEVLSLTEK 159

[Close]

BLAST of CmoCh18G012040 vs. TrEMBL
Match: A1DR77_CATRO (DNA-binding protein OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-25
Identity = 70/140 (50.00%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 38  FSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKT 97
           F   EKKRRLT DQ++ LE SF+V NKLE +RK+Q+A+E+GL+PRQVA+WFQNRRAR KT
Sbjct: 36  FHHPEKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKT 95

Query: 98  KKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKN---------- 157
           K++  +YDSL S +  L  ++DSL K N++LK EV  L EK    EK K           
Sbjct: 96  KQLEKEYDSLKSSFDKLNADYDSLFKENEKLKNEVKLLTEKLLMREKEKGKSKTCDSLCG 155

Query: 158 -PFEPDELEAMDSSVTELLG 167
              EPDE +   +S   L G
Sbjct: 156 FDIEPDEKQLASNSAVCLPG 175

[Close]

BLAST of CmoCh18G012040 vs. TAIR10
Match: AT3G01470.1 (AT3G01470.1 homeobox 1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-25
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRLT +Q+ LLE SF+  NKLE +RK Q+A+++GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 67  EKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 126

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNP-----FEPDELEA 161
            DYD L S Y  L + +DS+V  N +L++EV  L EK    ++  N       EP++L+ 
Sbjct: 127 RDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPPGQVPEPNQLDP 186

Query: 162 MDSSVTELLGESFLQDEEDELGYLGKLEDELSANEFMDSFD 198
           +  +   +  E  L       G +G    +  A + +DS D
Sbjct: 187 VYINAAAIKTEDRLSS-----GSVGSAVLDDDAPQLLDSCD 222

[Close]

BLAST of CmoCh18G012040 vs. TAIR10
Match: AT1G27045.1 (AT1G27045.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-24
Identity = 76/167 (45.51%), Postives = 100/167 (59.88%), Query Frame = 1


Query: 43  KKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVF 102
           KKR+LTP QLRLLE SF+   +LE DRKL +AE++GL+P QVAVWFQNRRAR KTK++  
Sbjct: 68  KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEH 127

Query: 103 DYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSVT 162
           D DSL + Y  LK ++D L   NQ LK++VD L+EK     KM+   E   +E       
Sbjct: 128 DCDSLKASYAKLKTDWDILFVQNQTLKSKVDLLKEKL----KMQENLETQSIE------R 187

Query: 163 ELLGESFLQDEEDELGYLGKLEDELSANEFMDSFDICASGLIDFKYD 210
           + LGE     + D   Y    E+E   N++  SF   A  ++ F YD
Sbjct: 188 KRLGEEGSSVKSDNTQY---SEEEGLENQY--SFPELA--VLGFYYD 217

[Close]

BLAST of CmoCh18G012040 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-23
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL  DQ++ LE +F++ NKLE +RK ++A+E+GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 58  EKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLE 117

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK 139
            DY  L  QY +L++ FDSL + N  L  E+ +++ K
Sbjct: 118 KDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAK 154

[Close]

BLAST of CmoCh18G012040 vs. TAIR10
Match: AT1G26960.1 (AT1G26960.1 homeobox protein 23)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-23
Identity = 51/97 (52.58%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL  +QL+ LE  F++ NKLE DRKL++A  +GL+PRQ+A+WFQNRRARSKTK++ 
Sbjct: 70  EKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLE 129

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK 139
            DYD L  Q+++L++E + L   NQ+L+ +V  L+ +
Sbjct: 130 KDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSR 166

[Close]

BLAST of CmoCh18G012040 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-23
Identity = 65/157 (41.40%), Postives = 103/157 (65.61%), Query Frame = 1


Query: 42  EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIV 101
           EKKRRL+ +Q++ LE +F++ NKLE +RK+++A+E+GL+PRQVAVWFQNRRAR KTK++ 
Sbjct: 61  EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 120

Query: 102 FDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSV 161
            DY  L +QY +L++ FDSL + N+ L  E+ +L+       K+      +E E  +++V
Sbjct: 121 KDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLK------TKLNGGGGEEEEEENNAAV 180

Query: 162 TELLGESFLQDEEDELGYLGKL-EDELSANEFMDSFD 198
           T    ES +  +E+E+    K+ E   S  +F++  D
Sbjct: 181 TT---ESDISVKEEEVSLPEKITEAPSSPPQFLEHSD 208

[Close]

BLAST of CmoCh18G012040 vs. NCBI nr
Match: gi|659090987|ref|XP_008446309.1| (PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 8.1e-42
Identity = 119/245 (48.57%), Postives = 147/245 (60.00%), Query Frame = 1


Query: 24  MNSDTPPSLSSP-----------NSFSSME-------KKRRLTPDQLRLLETSFDVHNKL 83
           M+S+T   LS P           +S SSM+       KKRRL+ DQ+RLLE +F+  NKL
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKL 60

Query: 84  EHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVFDYDSLNSQYQNLKNEFDSLVKLN 143
           EH+RK+QIAEEIGLRPRQVAVWFQNRRARSK K+I  DY+ LN++Y  LK++FDSL+ +N
Sbjct: 61  EHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMN 120

Query: 144 QELKTEVDELREKWAAIEKMKNPF---------------EPDELEAMD---------SSV 203
            ELK EVD+LR KWAA+EKMKN F               E  + + M          SS 
Sbjct: 121 HELKAEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYEVQMGSSR 180

[Close]

BLAST of CmoCh18G012040 vs. NCBI nr
Match: gi|449434833|ref|XP_004135200.1| (PREDICTED: homeobox-leucine zipper protein HAT5 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 118/245 (48.16%), Postives = 148/245 (60.41%), Query Frame = 1


Query: 24  MNSDTPPSLSSP-----------NSFSSME--------KKRRLTPDQLRLLETSFDVHNK 83
           M+S+T   LS P           +S SSM+        KKRRL+ DQ+RLLE +F+  NK
Sbjct: 1   MDSETTHFLSKPEASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENK 60

Query: 84  LEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVFDYDSLNSQYQNLKNEFDSLVKL 143
           LEH+RK+QIAEEIGLRPRQVAVWFQNRRARSK K+I  DY+ L+++Y  LK++FDSL+ +
Sbjct: 61  LEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNM 120

Query: 144 NQELKTEVDELREKWAAIEKMKNPFEPDELEAMDSSVTEL-------LGESFL------- 203
           N ELK EVD+LR  WAA+EKMKN FEP  +EAMDSSVT+L       +GE          
Sbjct: 121 NHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSS 180

[Close]

BLAST of CmoCh18G012040 vs. NCBI nr
Match: gi|976908916|gb|KVH96110.1| (Homeobox, conserved site-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 38  FSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKT 97
           F   EKKRRL+ DQ++ LE SF+  NKLE DRK+Q+A+E+ L+PRQVA+WFQNRRAR KT
Sbjct: 58  FRPTEKKRRLSVDQVQFLERSFEEENKLEPDRKIQLAKELNLQPRQVAIWFQNRRARCKT 117

Query: 98  KKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKMKNPFEPDEL--E 157
           K++  DY+ LNS Y  LK+EFD L K N +LK EV+ L+EK    EK +    P+E   E
Sbjct: 118 KQLEKDYEILNSSYDKLKSEFDCLQKHNDKLKHEVEMLKEKLHQREKGEKDSIPNEFPTE 177

Query: 158 AMDSSVTE 164
            +DS+  E
Sbjct: 178 ELDSNAQE 185

[Close]

BLAST of CmoCh18G012040 vs. NCBI nr
Match: gi|848915313|ref|XP_012855432.1| (PREDICTED: homeobox-leucine zipper protein ATHB-54-like [Erythranthe guttata])

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-25
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1


Query: 37  SFSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSK 96
           SF   EKKRRL PDQ+R LE SFD+ NKLE DRK+Q+A+E+GL+PRQVA+WFQNRRAR K
Sbjct: 44  SFHQSEKKRRLKPDQVRFLEKSFDLENKLEPDRKIQLAKEVGLQPRQVAIWFQNRRARYK 103

Query: 97  TKKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREKWAAIEKM-----KNPFEP 156
           TK +  ++ SL + Y  LK E+D++   NQ+LK EV+ LREK    E+      K PF  
Sbjct: 104 TKILEKEHSSLKANYDKLKQEYDAVFAQNQKLKDEVNLLREKVVVKEECDNFEEKTPFLC 163

Query: 157 DELEAMDSSVTELLGESFLQDEEDELGYLGKLEDELSANEF 193
            ++EA  ++      +++  D  +         D LS +EF
Sbjct: 164 GDIEAAAATSDVFDSDNYSSDVFE--------TDNLSVSEF 196

[Close]

BLAST of CmoCh18G012040 vs. NCBI nr
Match: gi|747078478|ref|XP_011086401.1| (PREDICTED: homeobox-leucine zipper protein HAT5 [Sesamum indicum])

HSP 1 Score: 123.2 bits (308), Expect = 5.3e-25
Identity = 69/146 (47.26%), Postives = 96/146 (65.75%), Query Frame = 1


Query: 37  SFSSMEKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSK 96
           SF   EKKRRLTP+Q++ LE SFD  NKLE +RKLQ+A+E+GL+PRQVA+WFQNRRAR K
Sbjct: 80  SFHHPEKKRRLTPNQVQFLEKSFDEENKLEPERKLQLAKELGLQPRQVAIWFQNRRARYK 139

Query: 97  TKKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDELREK-------WAAIEKMKNPF 156
           TK +  ++DSL S Y  LK ++D+L K N++LKTEV+ L EK           E+  +P 
Sbjct: 140 TKLLEKEFDSLKSSYDRLKADYDTLYKENEKLKTEVNSLAEKSRLRDNGKPKTEQCDDPI 199

Query: 157 EPDELEAMDSSVTELLGESFLQDEED 176
            P +L+      ++   ++    +ED
Sbjct: 200 SPLDLQPNKPICSQNAAQTVASKQED 225

The following BLAST results are available for this feature:

BLAST of CmoCh18G012040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HAT5_ARATH	7.6e-24	42.86	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1	[more]
ATB54_ARATH	8.4e-23	45.51	Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 ...	[more]
ATB16_ARATH	9.3e-22	53.61	Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 ...	[more]
ATB23_ARATH	1.2e-21	52.58	Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 ...	[more]
ATHB6_ARATH	1.6e-21	41.40	Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV...	[more]

BLAST of CmoCh18G012040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVU6_CUCSA	3.6e-41	48.16	Homeobox protein OS=Cucumis sativus GN=Csa_5G604260 PE=4 SV=1	[more]
A0A103XSK1_CYNCS	1.3e-25	53.91	Homeobox, conserved site-containing protein OS=Cynara cardunculus var. scolymus ...	[more]
A0A022Q5I2_ERYGU	1.6e-25	45.96	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012337mg PE=4 SV=1	[more]
A0A068U1T9_COFCA	8.2e-25	61.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039421001 PE=4 SV=1	[more]
A1DR77_CATRO	8.2e-25	50.00	DNA-binding protein OS=Catharanthus roseus PE=2 SV=1	[more]

BLAST of CmoCh18G012040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01470.1	4.3e-25	42.86	homeobox 1	[more]
AT1G27045.1	4.7e-24	45.51	Homeobox-leucine zipper protein family	[more]
AT4G40060.1	5.2e-23	53.61	homeobox protein 16	[more]
AT1G26960.1	6.8e-23	52.58	homeobox protein 23	[more]
AT2G22430.1	8.9e-23	41.40	homeobox protein 6	[more]

BLAST of CmoCh18G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090987\|ref\|XP_008446309.1\|	8.1e-42	48.57	PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo]	[more]
gi\|449434833\|ref\|XP_004135200.1\|	5.2e-41	48.16	PREDICTED: homeobox-leucine zipper protein HAT5 [Cucumis sativus]	[more]
gi\|976908916\|gb\|KVH96110.1\|	1.8e-25	53.91	Homeobox, conserved site-containing protein [Cynara cardunculus var. scolymus]	[more]
gi\|848915313\|ref\|XP_012855432.1\|	2.4e-25	45.96	PREDICTED: homeobox-leucine zipper protein ATHB-54-like [Erythranthe guttata]	[more]
gi\|747078478\|ref\|XP_011086401.1\|	5.3e-25	47.26	PREDICTED: homeobox-leucine zipper protein HAT5 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000047	HTH_motif
IPR001356	Homeobox_dom
IPR003106	Leu_zip_homeo
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012040.1	CmoCh18G012040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 69..78 score: 3.4E-5coord: 78..94 score: 3.
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 43..96 score: 4.3
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 41..102 score: 1.6
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 38..98 score: 16
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 103..138 score: 1.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 26..96 score: 4.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 22..98 score: 6.68
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 73..96 scor
None	No IPR available	unknown	Coil	Coil	coord: 104..145 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 41..163 score: 3.2
None	No IPR available	PANTHER	PTHR24326:SF171	SUBFAMILY NOT NAMED	coord: 41..163 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G012040	CmaCh04G016280	Cucurbita maxima (Rimu)	cmacmoB709
CmoCh18G012040	Cla010153	Watermelon (97103) v1	cmowmB365
CmoCh18G012040	Lsi04G004640	Bottle gourd (USVL1VR-Ls)	cmolsiB364
CmoCh18G012040	Cp4.1LG09g01450	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G012040	Bhi07G001313	Wax gourd	cmowgoB0535
CmoCh18G012040	Carg17242	Silver-seed gourd	carcmoB0140
CmoCh18G012040	Carg01731	Silver-seed gourd	carcmoB1132

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G012040	CmoCh04G017050	Cucurbita moschata (Rifu)	cmocmoB340

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G012040	Cucumber (Chinese Long) v3	cmocucB0473
CmoCh18G012040	Cucumber (Chinese Long) v3	cmocucB0487
CmoCh18G012040	Watermelon (97103) v2	cmowmbB403
CmoCh18G012040	Cucumber (Gy14) v1	cgycmoB0789
CmoCh18G012040	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G012040	Wild cucumber (PI 183967)	cmocpiB411
CmoCh18G012040	Cucumber (Chinese Long) v2	cmocuB406
CmoCh18G012040	Melon (DHL92) v3.5.1	cmomeB344
CmoCh18G012040	Watermelon (Charleston Gray)	cmowcgB358
CmoCh18G012040	Cucurbita pepo (Zucchini)	cmocpeB395
CmoCh18G012040	Cucumber (Gy14) v2	cgybcmoB603
CmoCh18G012040	Melon (DHL92) v3.6.1	cmomedB395
CmoCh18G012040	Melon (DHL92) v3.6.1	cmomedB415