CmoCh18G011040 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G011040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA glycosylase superfamily protein
LocationCmo_Chr18 : 11487282 .. 11488424 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTCCATGTCATCTCTGAACTCCAGAGCTTCATCCATGGAACATGTGTAGCAGATTGTAACTATGGAGGTTGTATATTCACTCGAGGGGCTCCGATTTCATCGTATATCTCCCACATAATGGTATATCCATTTTGAAGTACACAAACGCTCGGAAGACAAGTATTCTTGACTAAATCTCAAACACATCTGACCCGTAACGACATCTACTATGTTGACCTTATCTCTTGTCACTAGTGAGTTATCTCACTGGACATAAGACAAGCTATGACAACCATATACATTACGAGTGTATCATGAATCCTATTGCACGCTAGGGTAATCTCAATCAAGATGGGATGCAAAAAGGCCGACAAAGAGTTGTTGGATGGCATATCTTAATCTATGCAGGCAATGGGTATGCCTCGAACTTTGAGGTGAAGGAGTAGGAACTAAGAATGGCATGATCTTATTTACACTTGCTTTTGTTGTGCGCCGAAAGCGGAACAAATGTACTCACAACACCAATGAACGGAATTACACAAAGAGACACCAATGTACTCACAACACCATACGTAATGGGCCAAATTGGACAATATTTACTAGTGGTGGGCTTGAGCTGTTAAAGATGGTATCAGAGACAGGTATCGAGTGGTGTGCCAGCGATGACGCTGGACCCCCGGGGGTGTATTGCGAAATCTCACATCGATTGGAGAGGAGAACAAAACTTCCTTATAAAGGTGTGGAAACCTCTTTCTAGGTAGACGCGCTTTAAAATCGTGAGACTGATGACGATACGTAATGGGCCAAAGTGGATACAATCTAGATGGATTTGAGCCAAGTACGGTTGGCCAACATGGGGGAGAAAGAGATAACAGATATAGCATCAGACAAGGCTATTATGATGGTGGAAAGCAGAGTCGGGTGCATAGTTTTCGGTTTGTCGGGCTAGTGATTTTCTATTCATTCATGCAAGCTGCAGGGTTGACGATTGATCATCTTGTCGATTGTTTTCGGCAAAGTGAATCTGTAAATCTTGCAGAGAGACCATGGAACCTCCCCATATCTTCTACATCCTTGAGAAATGTCGACAAAGGCCTTTTGTCGATTGAGTTTCACGATTGGACTGATTGGACTCCGAGCTTGCTCCAAATTGGCTGA

mRNA sequence

ATGCTTCTCCATGTCATCTCTGAACTCCAGAGCTTCATCCATGGAACATGTGTAGCAGATTGTAACTATGGAGGGTTGACGATTGATCATCTTGTCGATTGTTTTCGGCAAAGTGAATCTGTAAATCTTGCAGAGAGACCATGGAACCTCCCCATATCTTCTACATCCTTGAGAAATGTCGACAAAGGCCTTTTGTCGATTGAGTTTCACGATTGGACTGATTGGACTCCGAGCTTGCTCCAAATTGGCTGA

Coding sequence (CDS)

ATGCTTCTCCATGTCATCTCTGAACTCCAGAGCTTCATCCATGGAACATGTGTAGCAGATTGTAACTATGGAGGGTTGACGATTGATCATCTTGTCGATTGTTTTCGGCAAAGTGAATCTGTAAATCTTGCAGAGAGACCATGGAACCTCCCCATATCTTCTACATCCTTGAGAAATGTCGACAAAGGCCTTTTGTCGATTGAGTTTCACGATTGGACTGATTGGACTCCGAGCTTGCTCCAAATTGGCTGA
Homology
[Close]
BLAST of CmoCh18G011040 vs. TAIR10
Match: AT1G13635.1 (AT1G13635.1 DNA glycosylase superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 1 

Query: 25  GLTIDHLVDCFRQSESVNLAERPW 49
           GLTIDHLVDCFR  + V+LAERPW
Sbjct: 285 GLTIDHLVDCFRHGDCVSLAERPW 308

The following BLAST results are available for this feature:
BLAST of CmoCh18G011040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G011040 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh18G011040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13635.13.0e-0679.17 DNA glycosylase superfamily protein[more]
BLAST of CmoCh18G011040 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G011040.1CmoCh18G011040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G011040Cucumber (Chinese Long) v3cmocucB0466
CmoCh18G011040Cucumber (Chinese Long) v3cmocucB0487
CmoCh18G011040Watermelon (97103) v2cmowmbB403
CmoCh18G011040Watermelon (97103) v2cmowmbB411
CmoCh18G011040Wax gourdcmowgoB0503
CmoCh18G011040Wax gourdcmowgoB0535
CmoCh18G011040Cucurbita moschata (Rifu)cmocmoB063
CmoCh18G011040Cucurbita moschata (Rifu)cmocmoB336
CmoCh18G011040Cucumber (Gy14) v1cgycmoB0265
CmoCh18G011040Cucumber (Gy14) v1cgycmoB0789
CmoCh18G011040Cucurbita maxima (Rimu)cmacmoB088
CmoCh18G011040Cucurbita maxima (Rimu)cmacmoB137
CmoCh18G011040Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G011040Cucurbita maxima (Rimu)cmacmoB706
CmoCh18G011040Wild cucumber (PI 183967)cmocpiB391
CmoCh18G011040Wild cucumber (PI 183967)cmocpiB411
CmoCh18G011040Cucumber (Chinese Long) v2cmocuB406
CmoCh18G011040Melon (DHL92) v3.5.1cmomeB344
CmoCh18G011040Melon (DHL92) v3.5.1cmomeB361
CmoCh18G011040Watermelon (Charleston Gray)cmowcgB358
CmoCh18G011040Watermelon (Charleston Gray)cmowcgB364
CmoCh18G011040Watermelon (97103) v1cmowmB365
CmoCh18G011040Watermelon (97103) v1cmowmB396
CmoCh18G011040Cucurbita pepo (Zucchini)cmocpeB390
CmoCh18G011040Cucurbita pepo (Zucchini)cmocpeB392
CmoCh18G011040Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G011040Cucurbita pepo (Zucchini)cmocpeB411
CmoCh18G011040Bottle gourd (USVL1VR-Ls)cmolsiB374
CmoCh18G011040Bottle gourd (USVL1VR-Ls)cmolsiB364
CmoCh18G011040Cucumber (Gy14) v2cgybcmoB603
CmoCh18G011040Melon (DHL92) v3.6.1cmomedB395
CmoCh18G011040Melon (DHL92) v3.6.1cmomedB412
CmoCh18G011040Silver-seed gourdcarcmoB0627
CmoCh18G011040Silver-seed gourdcarcmoB0811
CmoCh18G011040Silver-seed gourdcarcmoB1135