CmoCh18G010010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G010010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gag-pol polyprotein
Location	Cmo_Chr18 : 10906944 .. 10908455 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCATACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGACCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTATTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACGGATCATATAGTATCAAAATCTTCTGTTATGACTGAACCAAAGGCTGCCATCATGTCTGCAATAAATTTGCCTAATGGAGAGACAGCACGTGTGTCACATACTGGCAATATTTCCCTTAGCCCTAACCTTCAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAATCTTCAGCTCATCAAGTATCT

mRNA sequence

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCATACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGACCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAATCTTCAGCTCATCAAGTATCT

Coding sequence (CDS)

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCATACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGACCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAA

Homology

[Close]

BLAST of CmoCh18G010010 vs. TrEMBL
Match: A5BNR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 245/369 (66.40%), Postives = 294/369 (79.67%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL  KKKI
Sbjct: 283 MAGSQKASGSENKTIDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALTTKKKI 342

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
           GF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 343 GFVDGTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 402

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQR 180
           QFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QR
Sbjct: 403 QFSQKNAPAVFQIQKSIATMSQGTMTVAAYFTKIKALWDELETYRSPLTCNQRQAHLEQR 462

Query: 181 EEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIAS 240
           EED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+
Sbjct: 463 EEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVSSEPTENFSIAA 522

Query: 241 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR 300
           AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Sbjct: 523 AVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDRCRLKNGSNNKT 582

Query: 301 ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGN 360
              +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN
Sbjct: 583 GQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQAIRALNHSNSGN 642

Query: 361 SDNHVNVAG 366
            D + N AG
Sbjct: 643 IDAYANAAG 647

[Close]

BLAST of CmoCh18G010010 vs. TrEMBL
Match: A5AWA1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043610 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.0e-55
Identity = 107/238 (44.96%), Postives = 158/238 (66.39%), Query Frame = 1


Query: 3   ESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFI 62
           E ++     S  DL++PY+ HHSD PG  L+   LNG NY +W ++++ AL +K K+GF+
Sbjct: 2   EKSEIPTNFSKADLSNPYFTHHSDHPGLVLISKSLNGDNYSAWKRAMILALNSKNKLGFV 61

Query: 63  DGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFS 122
           +G+I+ PS++ +   +  W++CN M+ SW+ +++  +IA  +I+  TAH+VW DL ++FS
Sbjct: 62  NGSIKAPSEEIDPEGYATWSRCNDMVHSWIVNTLNPEIANSVIYYSTAHEVWEDLCERFS 121

Query: 123 QKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREED 182
           Q NAP IF+IQ  IA + Q  +++S Y+TKLK LWDEL +Y           H  Q+++ 
Sbjct: 122 QSNAPRIFEIQRDIACLRQEQLSVSAYYTKLKGLWDELASYNA-------AAHGAQQDQQ 181

Query: 183 KLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASA 241
           KLMQ LMGLN+SY  +R  IL+M+PLP+VRQAYS + QEE QR +TS      S ASA
Sbjct: 182 KLMQFLMGLNESYSVIRGQILLMNPLPSVRQAYSTISQEEKQRLLTSTNAAAESAASA 232

[Close]

BLAST of CmoCh18G010010 vs. TrEMBL
Match: A5BVX7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044218 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 131/350 (37.43%), Postives = 194/350 (55.43%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  L+   LNG NY +W +++  +L AK K+GFIDGT   PS   
Sbjct: 12  LDAANPYFLHHSDHPGIVLISKPLNGDNYWTWCRAMTISLNAKSKLGFIDGTTTMPSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E  LW +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IFQI+
Sbjct: 72  KPDEHALWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQTNAPHIFQIE 131

Query: 134 NSIATMSQGTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREEDKLMQLLMGLN 193
             IA ++Q  M ++ Y+T+LK LWDEL +Y  T  +C          +  +LMQ LMGLN
Sbjct: 132 RDIACLTQDQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKRRRLMQFLMGLN 191

Query: 194 QSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIASAVQKKTIYSKF 253
           +SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A  +++    +  
Sbjct: 192 ESYNAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATREMTEN--SAMVIRRAEPMALV 251

Query: 254 AKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------RQKNNSGRTRQD 313
            +     H   S    N       HC++CDR  H  + C           K+ S R+   
Sbjct: 252 VR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHASNRSNHG 311

Query: 314 NQH--NNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAI 350
           + H   N  ++SSAN  +V +    ++ P+     S  Q+++I   +  +
Sbjct: 312 STHFKRNNSHQSSAN--NVKERPVMQEVPSMTNGLSDLQIQQILSIMQGL 346

[Close]

BLAST of CmoCh18G010010 vs. TrEMBL
Match: A5BLV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 136/367 (37.06%), Postives = 197/367 (53.68%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  LV   LNG NY +W +++  +L AK K+GFIDGT   PS   
Sbjct: 12  LDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMPSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E   W +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IF I+
Sbjct: 72  KPDEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLXDRFSQSNAPRIFXIE 131

Query: 134 NSIATMSQGTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREEDKLMQLLMGLN 193
             IA ++Q  M ++ Y+T+LK LWDEL +Y  T  +C          +  +LMQ LMGLN
Sbjct: 132 XDIACLTQDQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKRXRLMQFLMGLN 191

Query: 194 QSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIASAVQKKTIYSKF 253
           +SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A  VQ+    +  
Sbjct: 192 ESYNAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATRETTEN--SAMVVQRAEPMALA 251

Query: 254 AKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------RQKNNSGRTRQD 313
            +     H   S    N       HC++CDR  H  + C           K+ S R+   
Sbjct: 252 VR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHASNRSNHG 311

Query: 314 NQH--NNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDN 367
           + H   N  ++SSAN  +V +    ++ P+     S  Q+++I   +       S N   
Sbjct: 312 STHFKRNNSHQSSAN--NVKERXVMQEVPSMTNGLSDLQIQQILSIMQGKGTTQSTNPKA 363

[Close]

BLAST of CmoCh18G010010 vs. TrEMBL
Match: A5BJ98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.7e-52
Identity = 127/315 (40.32%), Postives = 176/315 (55.87%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  LV   LNG NY +W +++  +L AK K+GFIDGT    S   
Sbjct: 12  LDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMSSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E   W +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IFQI+
Sbjct: 72  KPDEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIE 131

Query: 134 NSIATMSQGTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREEDKLMQLLMGLN 193
             IA ++Q  M ++ Y+T+LK LWDEL +Y  T  +C          +  +LMQ LMGLN
Sbjct: 132 RDIACLTQDQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKRRRLMQFLMGLN 191

Query: 194 QSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIASAVQKKTIYSKF 253
           +SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A  VQ+    +  
Sbjct: 192 ESYNAIRGQILLMNPLPDVARAYSSIVQEEKQRSLGATRETTEN--SAMVVQRAEPMALA 251

Query: 254 AKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------RQKNNSGRTRQD 313
            +     H   S    N       HC++CDR  H  + C           K+   R+   
Sbjct: 252 VR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHALNRSNHG 311

Query: 314 NQH--NNRGYRSSAN 315
           N H   N  ++SSAN
Sbjct: 312 NTHFKRNNSHQSSAN 313

[Close]

BLAST of CmoCh18G010010 vs. TAIR10
Match: AT1G21280.1 (AT1G21280.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-27
Identity = 75/235 (31.91%), Postives = 123/235 (52.34%), Query Frame = 1


Query: 1   MAESAKSSFKISDVDLTHPYY----IHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAK 60
           MAE+ KS    SD D   PYY    IHH     +S+  +  +  NY +W       L   
Sbjct: 1   MAETIKSVSPTSDPD--SPYYLPPDIHHPSD--FSIQKLSKDEDNYVAWKIRFRSFLRVT 60

Query: 61  KKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVD 120
           KK GFIDGT+ +P  D  S  ++ W QCN+M++ WL +S+   + + +++A+TAH++W D
Sbjct: 61  KKFGFIDGTLPKP--DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWED 120

Query: 121 LHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRT-------PFTC 180
           L   F       I+Q++  +AT+ QG  ++  YF KL  +W EL  Y            C
Sbjct: 121 LRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNC 180

Query: 181 NQRQIHIDQREEDKLMQLLMG--LNQSYKTVRSNILMMSPLPNVRQAYSLLVQEE 223
              +   + RE+++  + LMG  LNQ ++ V + I+   P P++ +A++++   E
Sbjct: 181 ECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229

[Close]

BLAST of CmoCh18G010010 vs. NCBI nr
Match: gi|147783627|emb|CAN68148.1| (hypothetical protein VITISV_035665 [Vitis vinifera])

HSP 1 Score: 480.7 bits (1236), Expect = 2.3e-132
Identity = 245/369 (66.40%), Postives = 294/369 (79.67%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL  KKKI
Sbjct: 283 MAGSQKASGSENKTIDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALTTKKKI 342

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
           GF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 343 GFVDGTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 402

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQR 180
           QFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QR
Sbjct: 403 QFSQKNAPAVFQIQKSIATMSQGTMTVAAYFTKIKALWDELETYRSPLTCNQRQAHLEQR 462

Query: 181 EEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIAS 240
           EED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+
Sbjct: 463 EEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVSSEPTENFSIAA 522

Query: 241 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR 300
           AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Sbjct: 523 AVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDRCRLKNGSNNKT 582

Query: 301 ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGN 360
              +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN
Sbjct: 583 GQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQAIRALNHSNSGN 642

Query: 361 SDNHVNVAG 366
            D + N AG
Sbjct: 643 IDAYANAAG 647

[Close]

BLAST of CmoCh18G010010 vs. NCBI nr
Match: gi|731437035|ref|XP_010647456.1| (PREDICTED: uncharacterized protein LOC104878585 [Vitis vinifera])

HSP 1 Score: 464.9 bits (1195), Expect = 1.3e-127
Identity = 241/369 (65.31%), Postives = 289/369 (78.32%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HALIAKK  
Sbjct: 1   MAGSQKASGSENKTIDSSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALIAKK-- 60

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
               GT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 61  ----GTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 120

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQR 180
           QFSQKNAP +FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QR
Sbjct: 121 QFSQKNAPTVFQIQKSIATMSQGTMTVAAYFTKIKALWDELETYRSPLTCNQRQTHLEQR 180

Query: 181 EEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIAS 240
           EED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+
Sbjct: 181 EEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVSSEPTENFSIAA 240

Query: 241 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR 300
           AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Sbjct: 241 AVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDRCRLKNGSNNKM 300

Query: 301 ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGN 360
              +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN
Sbjct: 301 GQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQAIRALNHSNSGN 359

Query: 361 SDNHVNVAG 366
            D + N AG
Sbjct: 361 IDAYANAAG 359

[Close]

BLAST of CmoCh18G010010 vs. NCBI nr
Match: gi|645219735|ref|XP_008237098.1| (PREDICTED: uncharacterized protein LOC103335838 [Prunus mume])

HSP 1 Score: 430.6 bits (1106), Expect = 2.7e-117
Identity = 215/404 (53.22%), Postives = 287/404 (71.04%), Query Frame = 1


Query: 2   AESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGF 61
           ++++ ++ K   +D +HPY++H SD PG  LVPIKLNG NY SWSKS++HAL AK K+GF
Sbjct: 14  SKNSSTNTKNPGMDSSHPYFVHQSDHPGLMLVPIKLNGTNYPSWSKSMLHALTAKNKVGF 73

Query: 62  IDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQF 121
           ++G+++ PS+     E+ LWNQCNSMI+SWL HS+E D+AK ++HAKT +QVW D  DQF
Sbjct: 74  VNGSVQPPSETEQPAEYALWNQCNSMILSWLAHSMEPDLAKAVVHAKTVYQVWQDFKDQF 133

Query: 122 SQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREE 181
           SQKNAP I+QIQ SIA++SQGTM +S Y+ KLK LWDELE Y+TP TCN+ + H  Q+E 
Sbjct: 134 SQKNAPTIYQIQKSIASLSQGTMTVSDYYKKLKDLWDELETYQTPLTCNEMKAHNTQKEA 193

Query: 182 DKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAV 241
           D++MQ LMGLN +Y  VR NILMMSPL NVRQAYSL+VQ+E QRQ+TS PTENFSIA+A+
Sbjct: 194 DRMMQFLMGLNDTYNGVRGNILMMSPLTNVRQAYSLVVQDETQRQITSGPTENFSIAAAI 253

Query: 242 QKKT-IYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNS----- 301
             ++   S  + +K CEHC+++GHTI ECR LKFHC +CDRRGHTEDRC+ KN +     
Sbjct: 254 HSRSNNMSNNSMNKHCEHCDRNGHTIEECRTLKFHCKYCDRRGHTEDRCKFKNGTWVPND 313

Query: 302 --------GRTRQDNQ----HNNRGYRSSANMADVSQLNTEE-----------QSPNSIP 361
                    +++Q  Q    HN+RG  S+A+ AD +  +  +              N + 
Sbjct: 314 TGIQGSKHNQSKQQRQGSKGHNSRGSFSTAHAADTAPAHEAQSYGFNATTQPASQSNPLH 373

Query: 362 NFSSEQLREIAQALSAINH-HPSGNSDNHVNVAGLGYGEDDWLG 376
            FS+EQL+++A A+S ++  H SGNS+ + N AG GYGEDDWLG
Sbjct: 374 GFSAEQLQQLAHAVSMMSSTHSSGNSNAYANAAGFGYGEDDWLG 417

[Close]

BLAST of CmoCh18G010010 vs. NCBI nr
Match: gi|802546646|ref|XP_012086161.1| (PREDICTED: uncharacterized protein LOC105645226 [Jatropha curcas])

HSP 1 Score: 419.9 bits (1078), Expect = 4.8e-114
Identity = 213/371 (57.41%), Postives = 284/371 (76.55%), Query Frame = 1


Query: 4   SAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFID 63
           S + S K+  +D T+PYY+HHSDQPG+ LV  KLNG NYQSW  +++HAL AKKK+GF+D
Sbjct: 3   SEQESTKLVAMDSTNPYYVHHSDQPGHMLVSTKLNGVNYQSWKIAMIHALRAKKKLGFVD 62

Query: 64  GTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQ 123
           GT+E PS + N +EFELWNQCNS+I++WL+HS+E +IA   +HAKTA QVW DL DQF Q
Sbjct: 63  GTLEMPSPEKNPSEFELWNQCNSLILTWLSHSIEPEIAARTVHAKTARQVWEDLRDQFGQ 122

Query: 124 KNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDK 183
           KNAPAIF+IQ +IATMSQGTM++++Y+ KLKA WDE+E YR+P  CNQ + H  ++EEDK
Sbjct: 123 KNAPAIFRIQKAIATMSQGTMSVASYYIKLKAFWDEIELYRSPIVCNQTKEHQIEKEEDK 182

Query: 184 LMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQK 243
           LMQ LMGLN S+KT RSNIL+M+PLPNVRQAYSL+VQEE Q+Q+ S+  ENFSIA+AVQ 
Sbjct: 183 LMQFLMGLNDSFKTTRSNILVMNPLPNVRQAYSLVVQEETQQQMNSDHGENFSIAAAVQG 242

Query: 244 KTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQK----NNSGRTR 303
           +T   K +K K CEHCN+SGHTI+ECR LK+HC  CD+ GHTEDRCR K    +++GR  
Sbjct: 243 QTSNWKQSKSKFCEHCNRSGHTIDECRTLKYHCTHCDKDGHTEDRCRIKKGTWSSNGRNG 302

Query: 304 QD--NQHNNRGYRSSANMADVSQL--NTEEQSPNSIPNFSSEQLREIAQALSAINHHPSG 363
           Q   ++ N +G   SANMA+ S++  ++ E + N +   ++EQ++++A+A++ IN + S 
Sbjct: 303 QPQRSKKNLKGSYPSANMAESSRMPHDSNESNGNLVQGLTAEQIQQLARAVALIN-NDSS 362

Query: 364 NSDNHVNVAGL 367
            S+  VN  GL
Sbjct: 363 KSEAFVNATGL 372

[Close]

BLAST of CmoCh18G010010 vs. NCBI nr
Match: gi|645260785|ref|XP_008235981.1| (PREDICTED: uncharacterized protein LOC103334794 [Prunus mume])

HSP 1 Score: 417.5 bits (1072), Expect = 2.4e-113
Identity = 210/395 (53.16%), Postives = 280/395 (70.89%), Query Frame = 1


Query: 2   AESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGF 61
           ++++ ++ K   +D +HPY++H SD PG  LVPIKLNG NY SWSKS++HAL AK K+GF
Sbjct: 14  SKNSSTNTKNPGMDSSHPYFVHQSDHPGLMLVPIKLNGTNYPSWSKSMLHALTAKNKVGF 73

Query: 62  IDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQF 121
           ++G+++ PS+     E+ LWNQCNSMI+SWL HSVE D+AK ++HAKT HQVW D  DQF
Sbjct: 74  VNGSVQPPSETEQPAEYALWNQCNSMILSWLAHSVEPDLAKAVVHAKTVHQVWQDFKDQF 133

Query: 122 SQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREE 181
           SQKNAP I+QIQ SIA++SQGTM +S Y+ KLK LWDELE Y+TP TCN+ + H  Q+EE
Sbjct: 134 SQKNAPTIYQIQKSIASLSQGTMTVSDYYKKLKDLWDELETYQTPLTCNEMKAHNTQKEE 193

Query: 182 DKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAV 241
           D++MQ LMGLN +Y  VR NILMMSPLPNVRQAYSL+VQ+E QRQ+TS PTENFSIA+A+
Sbjct: 194 DRMMQFLMGLNDTYNGVRGNILMMSPLPNVRQAYSLVVQDETQRQITSGPTENFSIAAAI 253

Query: 242 QKKT-IYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNS----- 301
             ++   S  + +K CEHC+++GHTI ECR LKFHC +CDRRGHTEDRC+ KN +     
Sbjct: 254 HSRSNNMSNNSMNKHCEHCDRNGHTIEECRTLKFHCKYCDRRGHTEDRCKFKNGTWVPND 313

Query: 302 --------GRTRQDNQ----HNNRGYRSSANMADVSQLNTEE-----------QSPNSIP 361
                    +++Q  Q    HN+RG  S+A+ AD +  +  +              N + 
Sbjct: 314 TGIQGSKHNQSKQQRQGSKGHNSRGSFSTAHAADTAPAHEAQSYGFNATTQPASQSNPLH 373

Query: 362 NFSSEQLREIAQALSAINH-HPSGNSDNHVNVAGL 367
             S+EQL+++A A+S ++  H SGNS+ + N AGL
Sbjct: 374 GLSAEQLQQLAHAVSMMSSTHSSGNSNAYANAAGL 408

The following BLAST results are available for this feature:

BLAST of CmoCh18G010010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh18G010010 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BNR5_VITVI	1.6e-132	66.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1	[more]
A5AWA1_VITVI	6.0e-55	44.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043610 PE=4 SV=1	[more]
A5BVX7_VITVI	2.5e-53	37.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044218 PE=4 SV=1	[more]
A5BLV0_VITVI	2.5e-53	37.06	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1	[more]
A5BJ98_VITVI	3.7e-52	40.32	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1	[more]

BLAST of CmoCh18G010010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21280.1	2.8e-27	31.91	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CmoCh18G010010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147783627\|emb\|CAN68148.1\|	2.3e-132	66.40	hypothetical protein VITISV_035665 [Vitis vinifera]	[more]
gi\|731437035\|ref\|XP_010647456.1\|	1.3e-127	65.31	PREDICTED: uncharacterized protein LOC104878585 [Vitis vinifera]	[more]
gi\|645219735\|ref\|XP_008237098.1\|	2.7e-117	53.22	PREDICTED: uncharacterized protein LOC103335838 [Prunus mume]	[more]
gi\|802546646\|ref\|XP_012086161.1\|	4.8e-114	57.41	PREDICTED: uncharacterized protein LOC105645226 [Jatropha curcas]	[more]
gi\|645260785\|ref\|XP_008235981.1\|	2.4e-113	53.16	PREDICTED: uncharacterized protein LOC103334794 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010010.1	CmoCh18G010010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 251..292 score: 5.
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 251..293 score: 1.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 31..270 score: 1.0
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 31..270 score: 1.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 81..226 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G010010	Cucumber (Gy14) v2	cgybcmoB091
CmoCh18G010010	Cucumber (Gy14) v2	cgybcmoB602
CmoCh18G010010	Cucumber (Gy14) v2	cgybcmoB603
CmoCh18G010010	Melon (DHL92) v3.6.1	cmomedB393
CmoCh18G010010	Melon (DHL92) v3.6.1	cmomedB395
CmoCh18G010010	Melon (DHL92) v3.6.1	cmomedB412
CmoCh18G010010	Silver-seed gourd	carcmoB1135
CmoCh18G010010	Silver-seed gourd	carcmoB1411
CmoCh18G010010	Cucumber (Chinese Long) v3	cmocucB0467
CmoCh18G010010	Cucumber (Chinese Long) v3	cmocucB0486
CmoCh18G010010	Cucumber (Chinese Long) v3	cmocucB0487
CmoCh18G010010	Watermelon (97103) v2	cmowmbB388
CmoCh18G010010	Watermelon (97103) v2	cmowmbB403
CmoCh18G010010	Watermelon (97103) v2	cmowmbB411
CmoCh18G010010	Wax gourd	cmowgoB0501
CmoCh18G010010	Wax gourd	cmowgoB0535
CmoCh18G010010	Cucurbita moschata (Rifu)	cmocmoB344
CmoCh18G010010	Cucurbita moschata (Rifu)	cmocmoB102
CmoCh18G010010	Cucurbita moschata (Rifu)	cmocmoB244
CmoCh18G010010	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh18G010010	Cucumber (Gy14) v1	cgycmoB0773
CmoCh18G010010	Cucumber (Gy14) v1	cgycmoB0789
CmoCh18G010010	Cucurbita maxima (Rimu)	cmacmoB293
CmoCh18G010010	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G010010	Cucurbita maxima (Rimu)	cmacmoB706
CmoCh18G010010	Cucurbita maxima (Rimu)	cmacmoB714
CmoCh18G010010	Wild cucumber (PI 183967)	cmocpiB394
CmoCh18G010010	Wild cucumber (PI 183967)	cmocpiB409
CmoCh18G010010	Wild cucumber (PI 183967)	cmocpiB411
CmoCh18G010010	Cucumber (Chinese Long) v2	cmocuB389
CmoCh18G010010	Cucumber (Chinese Long) v2	cmocuB404
CmoCh18G010010	Cucumber (Chinese Long) v2	cmocuB406
CmoCh18G010010	Melon (DHL92) v3.5.1	cmomeB342
CmoCh18G010010	Melon (DHL92) v3.5.1	cmomeB344
CmoCh18G010010	Melon (DHL92) v3.5.1	cmomeB361
CmoCh18G010010	Watermelon (Charleston Gray)	cmowcgB347
CmoCh18G010010	Watermelon (Charleston Gray)	cmowcgB358
CmoCh18G010010	Watermelon (Charleston Gray)	cmowcgB364
CmoCh18G010010	Watermelon (97103) v1	cmowmB365
CmoCh18G010010	Watermelon (97103) v1	cmowmB383
CmoCh18G010010	Watermelon (97103) v1	cmowmB396
CmoCh18G010010	Cucurbita pepo (Zucchini)	cmocpeB392
CmoCh18G010010	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G010010	Cucurbita pepo (Zucchini)	cmocpeB383
CmoCh18G010010	Cucurbita pepo (Zucchini)	cmocpeB411
CmoCh18G010010	Bottle gourd (USVL1VR-Ls)	cmolsiB374
CmoCh18G010010	Bottle gourd (USVL1VR-Ls)	cmolsiB352
CmoCh18G010010	Bottle gourd (USVL1VR-Ls)	cmolsiB364