CmoCh18G008950 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G008950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 10196777 .. 10199214 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCCTCCCCACCTTCCTTCTCTGTTAAAGCCCCGTCGGTTCCGCGACTTTTCTTATTTCCTCCCTCCCAGCGCCGGCGATTCTCCACATCGTTCTTCATCTAACTCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGGTGATTAATTCTTCTTTTCCCCTTTTTGAACTGTCTAGCTTTCTAATGAGGTTTTTCTGGAATTGAAGTTCGTAAATGCTGTACGATCATTTTCTGAAAGTCGTTCTTGCATAATTTTTCGGATTAGGTTTAATTTTAACTGCAGAAAGGACTATAATAGCTTCAATAGTTTGGGCTGAGGGTTGTGGTTGCGTTTGGTTGTTGTTATGATTATATTGGAAAAAATAAGTTTGATATAATTGTAGGATTAAGTTTTTGAGTTCAACAGTGATCTAATTTTAGAGTTCACTTTTTCTTTTGGCTCTGTGCTGATTTTAGAATCAGAAAAGTATTACGAATATCGTGACCTTTTAGCTTAACTTTTAGGGTTAAACGATGACCATATTTTCTCTCCCAGGCTTTCTTTAAGCTTGGACTAGGCTTGAAAGTGATACAGTTCTTAAAATTTCTTAAATCTTTTTAAGAGGAGTTTTGCAGTTTTGTGGCTGATAGGAGAGGTTCTTTGAATAGTTTCCTGTTTGAAATGGTATTTCTAGGGACGTGGAAGCTTTGAGTGCTTCAATGGATTTGTTCTAGATGGAGCTGATACTCAAAATTTGCACCAAAACAATTTTCTTTTTCTCCACGAAAACTCGGTTTCTTACCAAAAGAAACAAACAGCAAGCCTGCTTATACTTTCCTGTCAAAAGAAAAAACCTGCTGAAAGTATTTTTGCGTTGCAATTGTTATCTAGTTCTAAAAAGCAGAAAAGATGAAGAGTTTGGGATTTTGTTCATTTGGCGAACTTCAATCGAATTAATGTTCGATACTGTGAACAGTTTTTTTAGTTAGTAATGTTGCCGTTGATTCGATTAATTGCAAAAGATGAGGGTGAACAGATCGCAGCTAGATATTTTGAATGATCATTGCTAAACTTATCTTGGGATCTAACAACTTAAAGCCAATACACCATAGGTTCAAACTAAATTATTATTAGTTAGTTTGAAGTTTTAACACAGTTTTCTACTCTGACACTGTTTTCAATTATTGTTAGACCCAAAAACTGTAGTTAATTGTCTTATCATACGGTCACTGCATGATATTTAAAGATGCTTTTCTCTGTTATAGTTGAGAATGTTTCTTGCCCATGTTCATCTGAGATAAGACTCCCCACTCACACACAATTTTTGTAGTAATTCCAAATTTGTTAGGCTTGGCAAGTTGGCTACTGTCTGCCCCGTTACATTTATCTTCTATTACGAGGATGTGATGGTTAAATTATAAGTTTAGTTTTTAAACTTAAAAATGATTTAATAGATTCTTCAACGGTCAATTTTGTGTTTAATATGTCATTTACCTACAAGAAATACATCAAGAACTCGTTAGACACAAAAAGTAAGGTTCAAGCTGTTGAGGATTATTGGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAAGAATACTACCTCCATTGGTATAAGGCCTTTTGGAGAAGCTCAAAGCAAAGTTACGAGAGCTTAGGCTCAAAGTGGACAATATTATACCATTATGGAGAGTCGTGTTCATCTAACATAGTATCAGAGCTAACAACTAGTATCGATCCATCCTAACACACAAGCAAATTGTTTTGACCAAATTTGATTCATGAAGAATAGAAAATTCATAGTGAAAGTGTGTGTAAATAGAGACTGAATTACAAACATCTGATACAAGCACCATGTTCTTGCAGCTTGCCTCTCCGAAGAAGAAGAAAATTGATGCTGAAGTTAAGGATAGATGCTTGGAATTGATAAAGGCAACTAATTGATGCAGATGATATTTTCAGTATCTGTACTGGAGCCTCGTCATGAACAGGTAATATCGATGATCATTGGCATATATTGATCTCTTTGTACAGTCAACTTGGATTTGGATGCTGGACAGTTTGATATGTGGATTTGTTTATTTTAGGCTACACATTTGTAAGTACCAACACTATTTATTGACTTTTTCGGACCATACCCAAACTTAGATTTTTATTACCTGTTCACTTTTACCATCGAAAAC

mRNA sequence

TTTCCCTCCCCACCTTCCTTCTCTGTTAAAGCCCCGTCGGTTCCGCGACTTTTCTTATTTCCTCCCTCCCAGCGCCGGCGATTCTCCACATCGTTCTTCATCTAACTCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGCTTGCCTCTCCGAAGAAGAAGAAAATTGATGCTGAAGTTAAGGATAGATGCTTGGAATTGATAAAGGCAACTAATTGATGCAGATGATATTTTCAGTATCTGTACTGGAGCCTCGTCATGAACAGGTAATATCGATGATCATTGGCATATATTGATCTCTTTGTACAGTCAACTTGGATTTGGATGCTGGACAGTTTGATATGTGGATTTGTTTATTTTAGGCTACACATTTGTAAGTACCAACACTATTTATTGACTTTTTCGGACCATACCCAAACTTAGATTTTTATTACCTGTTCACTTTTACCATCGAAAAC

Coding sequence (CDS)

ATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGCTTGCCTCTCCGAAGAAGAAGAAAATTGA
BLAST of CmoCh18G008950 vs. TrEMBL
Match: A0A0A0KRM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623370 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSD-ADGETSG 60
          MHLWPSTRIRDSFK AYI+KLEWN+HRMKIQKH Q QSSSKQNLLDK+++SD AD ETS 
Sbjct: 1  MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKH-QHQSSSKQNLLDKEEASDAADAETSE 60

Query: 61 KSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCG 92
           S SVSFG RVLEF SE+  LLSCCYCCYCCG
Sbjct: 61 PSPSVSFGQRVLEFFSELFHLLSCCYCCYCCG 91

BLAST of CmoCh18G008950 vs. TrEMBL
Match: V4T8W8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLL---DKQQSSDADGET 60
          MHLWPS RIRDSFK +Y++KLEWN+ RM  +K QQ QS+ +Q  L   D  Q +D     
Sbjct: 1  MHLWPSMRIRDSFKISYLKKLEWNLSRMNSEKKQQSQSNDQQQTLLVDDNNQRNDISETP 60

Query: 61 SGKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEE 99
          S K S   FG   +  C E+L++LSCCYCC+CCGAC+  EE
Sbjct: 61 SSKKSH--FGSGFVAVCGEILMVLSCCYCCFCCGACIDHEE 99

BLAST of CmoCh18G008950 vs. TrEMBL
Match: A0A061FV08_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_046957 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.2e-19
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQ---QQSSSKQNLLDKQQSSDADGET 60
          MHLWPS RIRDSFK+AY++KLEWN+HRMK +K      +  S++Q LL++++++D+   +
Sbjct: 1  MHLWPSVRIRDSFKAAYLRKLEWNLHRMKSEKRSSSSPRTPSNQQKLLNEKEAADSASAS 60

Query: 61 SGKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEE 99
          SG S+S       +  C E+ ++LSCCYCC+CCGAC+  EE
Sbjct: 61 SGCSAS------FIVICREISMVLSCCYCCFCCGACVDHEE 95

BLAST of CmoCh18G008950 vs. TrEMBL
Match: U5G567_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22920g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 1

Query: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60
           MHLWP+ RIRDSFK AY++KLEWN HRM I+K Q+ Q +S  N   ++   D D  ++ +
Sbjct: 1   MHLWPTMRIRDSFKIAYLKKLEWNFHRMNIEKKQKSQETSDSN--QQRLLDDGDDNSTNQ 60

Query: 61  SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEE 100
              V    +V+  C E+L+L++CCYCC+CCGAC+ ++EE
Sbjct: 61  QQPVK-ASKVVLICREILMLVTCCYCCFCCGACVDQDEE 96

BLAST of CmoCh18G008950 vs. TrEMBL
Match: V4SPH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1

Query: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLL---DKQQSSDADGET 60
           MHLWPS RIRDSFK +Y++KLEWN+ RM  +K QQ QS+ +Q  L   D  Q +D     
Sbjct: 1   MHLWPSMRIRDSFKISYLKKLEWNLSRMNSEKKQQSQSNDQQQTLLVDDNNQRNDISETP 60

Query: 61  SGKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 101
           S K S   FG   +  C E+L++LSCCYCC+CCG  L +E  N
Sbjct: 61  SSKKS--HFGSGFVAVCGEILMVLSCCYCCFCCGGFLDKELVN 101

BLAST of CmoCh18G008950 vs. TAIR10
Match: AT5G49015.1 (AT5G49015.1 Expressed protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60
          MHLWPS ++R+SFKS               QK  Q+ +S KQ+  ++Q+  D D E+   
Sbjct: 1  MHLWPSLKLRNSFKST-------------SQKRYQRMNSGKQSQSNQQKLLDGDKESG-- 60

Query: 61 SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEE 99
          S  +S G      C +V ++LSCCYCC+CCGAC+ EEE
Sbjct: 61 SPEISSGGGFAVVCRDVAMVLSCCYCCFCCGACIDEEE 83

BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|700197096|gb|KGN52273.1| (hypothetical protein Csa_5G623370 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSD-ADGETSG 60
          MHLWPSTRIRDSFK AYI+KLEWN+HRMKIQKH Q QSSSKQNLLDK+++SD AD ETS 
Sbjct: 1  MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKH-QHQSSSKQNLLDKEEASDAADAETSE 60

Query: 61 KSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCG 92
           S SVSFG RVLEF SE+  LLSCCYCCYCCG
Sbjct: 61 PSPSVSFGQRVLEFFSELFHLLSCCYCCYCCG 91

BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|567887800|ref|XP_006436422.1| (hypothetical protein CICLE_v10033160mg [Citrus clementina])

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLL---DKQQSSDADGET 60
          MHLWPS RIRDSFK +Y++KLEWN+ RM  +K QQ QS+ +Q  L   D  Q +D     
Sbjct: 1  MHLWPSMRIRDSFKISYLKKLEWNLSRMNSEKKQQSQSNDQQQTLLVDDNNQRNDISETP 60

Query: 61 SGKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEE 99
          S K S   FG   +  C E+L++LSCCYCC+CCGAC+  EE
Sbjct: 61 SSKKSH--FGSGFVAVCGEILMVLSCCYCCFCCGACIDHEE 99

BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|590565011|ref|XP_007009829.1| (Uncharacterized protein TCM_046957 [Theobroma cacao])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQ---QQSSSKQNLLDKQQSSDADGET 60
          MHLWPS RIRDSFK+AY++KLEWN+HRMK +K      +  S++Q LL++++++D+   +
Sbjct: 1  MHLWPSVRIRDSFKAAYLRKLEWNLHRMKSEKRSSSSPRTPSNQQKLLNEKEAADSASAS 60

Query: 61 SGKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEE 99
          SG S+S       +  C E+ ++LSCCYCC+CCGAC+  EE
Sbjct: 61 SGCSAS------FIVICREISMVLSCCYCCFCCGACVDHEE 95

BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|566192275|ref|XP_006378765.1| (hypothetical protein POPTR_0010s22920g [Populus trichocarpa])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 1

Query: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60
           MHLWP+ RIRDSFK AY++KLEWN HRM I+K Q+ Q +S  N   ++   D D  ++ +
Sbjct: 1   MHLWPTMRIRDSFKIAYLKKLEWNFHRMNIEKKQKSQETSDSN--QQRLLDDGDDNSTNQ 60

Query: 61  SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEE 100
              V    +V+  C E+L+L++CCYCC+CCGAC+ ++EE
Sbjct: 61  QQPVK-ASKVVLICREILMLVTCCYCCFCCGACVDQDEE 96

BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|1012179956|ref|XP_015967910.1| (PREDICTED: uncharacterized protein LOC107491557 [Arachis duranensis])

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-18
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1

Query: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDK--QQSSDADGETS 60
          MHLWPS  +RDSFK +YI++LEWN HRM+ QK QQ     KQ LLD   QQ    + E  
Sbjct: 1  MHLWPSKNLRDSFKLSYIKRLEWNHHRMQQQKQQQ-----KQKLLDDEDQQQVQVEVEVE 60

Query: 61 GKSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEE 98
          G S+S + G      C +++LLLSCCYCC+CCGAC+ E+
Sbjct: 61 GDSASQNDGVSFASMCQDLILLLSCCYCCFCCGACVEEK 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KRM0_CUCSA1.1e-3080.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623370 PE=4 SV=1[more]
V4T8W8_9ROSI1.9e-1952.48Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1[more]
A0A061FV08_THECC9.2e-1949.50Uncharacterized protein OS=Theobroma cacao GN=TCM_046957 PE=4 SV=1[more]
U5G567_POPTR1.2e-1848.48Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22920g PE=4 SV=1[more]
V4SPH7_9ROSI7.8e-1850.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G49015.11.8e-1341.84 Expressed protein[more]
Match NameE-valueIdentityDescription
gi|700197096|gb|KGN52273.1|1.5e-3080.43hypothetical protein Csa_5G623370 [Cucumis sativus][more]
gi|567887800|ref|XP_006436422.1|2.7e-1952.48hypothetical protein CICLE_v10033160mg [Citrus clementina][more]
gi|590565011|ref|XP_007009829.1|1.3e-1849.50Uncharacterized protein TCM_046957 [Theobroma cacao][more]
gi|566192275|ref|XP_006378765.1|1.7e-1848.48hypothetical protein POPTR_0010s22920g [Populus trichocarpa][more]
gi|1012179956|ref|XP_015967910.1|5.0e-1852.53PREDICTED: uncharacterized protein LOC107491557 [Arachis duranensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G008950.1CmoCh18G008950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37263FAMILY NOT NAMEDcoord: 2..99
score: 1.0
NoneNo IPR availablePANTHERPTHR37263:SF1SUBFAMILY NOT NAMEDcoord: 2..99
score: 1.0