CmoCh18G008950 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCCTCCCCACCTTCCTTCTCTGTTAAAGCCCCGTCGGTTCCGCGACTTTTCTTATTTCCTCCCTCCCAGCGCCGGCGATTCTCCACATCGTTCTTCATCTAACTCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGGTGATTAATTCTTCTTTTCCCCTTTTTGAACTGTCTAGCTTTCTAATGAGGTTTTTCTGGAATTGAAGTTCGTAAATGCTGTACGATCATTTTCTGAAAGTCGTTCTTGCATAATTTTTCGGATTAGGTTTAATTTTAACTGCAGAAAGGACTATAATAGCTTCAATAGTTTGGGCTGAGGGTTGTGGTTGCGTTTGGTTGTTGTTATGATTATATTGGAAAAAATAAGTTTGATATAATTGTAGGATTAAGTTTTTGAGTTCAACAGTGATCTAATTTTAGAGTTCACTTTTTCTTTTGGCTCTGTGCTGATTTTAGAATCAGAAAAGTATTACGAATATCGTGACCTTTTAGCTTAACTTTTAGGGTTAAACGATGACCATATTTTCTCTCCCAGGCTTTCTTTAAGCTTGGACTAGGCTTGAAAGTGATACAGTTCTTAAAATTTCTTAAATCTTTTTAAGAGGAGTTTTGCAGTTTTGTGGCTGATAGGAGAGGTTCTTTGAATAGTTTCCTGTTTGAAATGGTATTTCTAGGGACGTGGAAGCTTTGAGTGCTTCAATGGATTTGTTCTAGATGGAGCTGATACTCAAAATTTGCACCAAAACAATTTTCTTTTTCTCCACGAAAACTCGGTTTCTTACCAAAAGAAACAAACAGCAAGCCTGCTTATACTTTCCTGTCAAAAGAAAAAACCTGCTGAAAGTATTTTTGCGTTGCAATTGTTATCTAGTTCTAAAAAGCAGAAAAGATGAAGAGTTTGGGATTTTGTTCATTTGGCGAACTTCAATCGAATTAATGTTCGATACTGTGAACAGTTTTTTTAGTTAGTAATGTTGCCGTTGATTCGATTAATTGCAAAAGATGAGGGTGAACAGATCGCAGCTAGATATTTTGAATGATCATTGCTAAACTTATCTTGGGATCTAACAACTTAAAGCCAATACACCATAGGTTCAAACTAAATTATTATTAGTTAGTTTGAAGTTTTAACACAGTTTTCTACTCTGACACTGTTTTCAATTATTGTTAGACCCAAAAACTGTAGTTAATTGTCTTATCATACGGTCACTGCATGATATTTAAAGATGCTTTTCTCTGTTATAGTTGAGAATGTTTCTTGCCCATGTTCATCTGAGATAAGACTCCCCACTCACACACAATTTTTGTAGTAATTCCAAATTTGTTAGGCTTGGCAAGTTGGCTACTGTCTGCCCCGTTACATTTATCTTCTATTACGAGGATGTGATGGTTAAATTATAAGTTTAGTTTTTAAACTTAAAAATGATTTAATAGATTCTTCAACGGTCAATTTTGTGTTTAATATGTCATTTACCTACAAGAAATACATCAAGAACTCGTTAGACACAAAAAGTAAGGTTCAAGCTGTTGAGGATTATTGGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAAGAATACTACCTCCATTGGTATAAGGCCTTTTGGAGAAGCTCAAAGCAAAGTTACGAGAGCTTAGGCTCAAAGTGGACAATATTATACCATTATGGAGAGTCGTGTTCATCTAACATAGTATCAGAGCTAACAACTAGTATCGATCCATCCTAACACACAAGCAAATTGTTTTGACCAAATTTGATTCATGAAGAATAGAAAATTCATAGTGAAAGTGTGTGTAAATAGAGACTGAATTACAAACATCTGATACAAGCACCATGTTCTTGCAGCTTGCCTCTCCGAAGAAGAAGAAAATTGATGCTGAAGTTAAGGATAGATGCTTGGAATTGATAAAGGCAACTAATTGATGCAGATGATATTTTCAGTATCTGTACTGGAGCCTCGTCATGAACAGGTAATATCGATGATCATTGGCATATATTGATCTCTTTGTACAGTCAACTTGGATTTGGATGCTGGACAGTTTGATATGTGGATTTGTTTATTTTAGGCTACACATTTGTAAGTACCAACACTATTTATTGACTTTTTCGGACCATACCCAAACTTAGATTTTTATTACCTGTTCACTTTTACCATCGAAAAC TTTCCCTCCCCACCTTCCTTCTCTGTTAAAGCCCCGTCGGTTCCGCGACTTTTCTTATTTCCTCCCTCCCAGCGCCGGCGATTCTCCACATCGTTCTTCATCTAACTCGAGAGGCAAAGATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGCTTGCCTCTCCGAAGAAGAAGAAAATTGATGCTGAAGTTAAGGATAGATGCTTGGAATTGATAAAGGCAACTAATTGATGCAGATGATATTTTCAGTATCTGTACTGGAGCCTCGTCATGAACAGGTAATATCGATGATCATTGGCATATATTGATCTCTTTGTACAGTCAACTTGGATTTGGATGCTGGACAGTTTGATATGTGGATTTGTTTATTTTAGGCTACACATTTGTAAGTACCAACACTATTTATTGACTTTTTCGGACCATACCCAAACTTAGATTTTTATTACCTGTTCACTTTTACCATCGAAAAC ATGCATCTGTGGCCATCGACGAGGATCAGAGACTCTTTCAAGAGTGCTTATATCCAAAAGCTGGAATGGAACATCCACAGAATGAAAATCCAGAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGTTGGATAAACAACAATCTTCTGATGCCGATGGCGAAACTTCAGGGAAATCCAGTTCAGTTTCCTTTGGTCATCGAGTTCTTGAATTCTGCTCTGAAGTTCTCCTGCTTCTCTCCTGTTGTTATTGTTGCTATTGCTGTGGAGCTTGCCTCTCCGAAGAAGAAGAAAATTGA
BLAST of CmoCh18G008950 vs. TrEMBL
Match: A0A0A0KRM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623370 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30 Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 1
BLAST of CmoCh18G008950 vs. TrEMBL
Match: V4T8W8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19 Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1
BLAST of CmoCh18G008950 vs. TrEMBL
Match: A0A061FV08_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_046957 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.2e-19 Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1
BLAST of CmoCh18G008950 vs. TrEMBL
Match: U5G567_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22920g PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18 Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 1
BLAST of CmoCh18G008950 vs. TrEMBL
Match: V4SPH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033160mg PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18 Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1
BLAST of CmoCh18G008950 vs. TAIR10
Match: AT5G49015.1 (AT5G49015.1 Expressed protein) HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13 Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1
BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|700197096|gb|KGN52273.1| (hypothetical protein Csa_5G623370 [Cucumis sativus]) HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30 Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 1
BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|567887800|ref|XP_006436422.1| (hypothetical protein CICLE_v10033160mg [Citrus clementina]) HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19 Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1
BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|590565011|ref|XP_007009829.1| (Uncharacterized protein TCM_046957 [Theobroma cacao]) HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18 Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1
BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|566192275|ref|XP_006378765.1| (hypothetical protein POPTR_0010s22920g [Populus trichocarpa]) HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18 Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 1
BLAST of CmoCh18G008950 vs. NCBI nr
Match: gi|1012179956|ref|XP_015967910.1| (PREDICTED: uncharacterized protein LOC107491557 [Arachis duranensis]) HSP 1 Score: 99.0 bits (245), Expect = 5.0e-18 Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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