CmoCh18G007460 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G007460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCytochrome P450
LocationCmo_Chr18 : 9158443 .. 9158769 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCAAGAGCTTGTAAGTGAAGCTGAGGCCTTATTGGGAAGCTATAGTGCTTCTGAGTTTTTTTCTTATTTCTTTTGTGGGGAAGATAATTGATAGGCTAAGTGGTCGAGAAGCTAGATTTGAGAGGATTTTTAATGAGATCAATGCTTTGTTTCAAAAGGCAACTGATGAACATCTTGGTCTAAAAAGATCTAAGCCAGGGCAAGGTGATATCATTGATGTGCTTTTAGCTATGAGTAAAAAGCAAGCTGAATCTTACACCGTTGTCATTATCCAAGAAAGAATCAAACCCATTCTTTTGGTAAGCAACTTCTATTCCTAA

mRNA sequence

ATGGATTTCAAGAGCTTGCTAAGTGGTCGAGAAGCTAGATTTGAGAGGATTTTTAATGAGATCAATGCTTTGTTTCAAAAGGCAACTGATGAACATCTTGGTCTAAAAAGATCTAAGCCAGGGCAAGGTGATATCATTGATGTGCTTTTAGCTATGAGTAAAAAGCAAGCTGAATCTTACACCGTTGTCATTATCCAAGAAAGAATCAAACCCATTCTTTTGGTAAGCAACTTCTATTCCTAA

Coding sequence (CDS)

ATGGATTTCAAGAGCTTGCTAAGTGGTCGAGAAGCTAGATTTGAGAGGATTTTTAATGAGATCAATGCTTTGTTTCAAAAGGCAACTGATGAACATCTTGGTCTAAAAAGATCTAAGCCAGGGCAAGGTGATATCATTGATGTGCTTTTAGCTATGAGTAAAAAGCAAGCTGAATCTTACACCGTTGTCATTATCCAAGAAAGAATCAAACCCATTCTTTTGGTAAGCAACTTCTATTCCTAA
Homology
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BLAST of CmoCh18G007460 vs. NCBI nr
Match: gi|1009153141|ref|XP_015894477.1| (PREDICTED: cytochrome P450 71B34-like [Ziziphus jujuba])

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-06
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1 

Query: 7   LSGREARFERIFNEINALFQKATDEHLGLKRSKPGQGDIIDVLLAMSKKQAESYTVVIIQ 66
           LSG   RFER FNE++  FQ   D HL  +R+K    DIIDVLL + ++Q       + Q
Sbjct: 233 LSGLHQRFERTFNELDRFFQYVVDNHLSAERTKTDHEDIIDVLLKLVREQTGFGAAQLSQ 292

Query: 67  ERIKPILL 75
           + IK +LL
Sbjct: 293 DNIKAVLL 300

The following BLAST results are available for this feature:
BLAST of CmoCh18G007460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G007460 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh18G007460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh18G007460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009153141|ref|XP_015894477.1|7.9e-0644.12PREDICTED: cytochrome P450 71B34-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506iron ion binding
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G007460.1CmoCh18G007460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001128Cytochrome P450GENE3DG3DSA:1.10.630.10coord: 4..61
score: 6.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G007460Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G007460Bottle gourd (USVL1VR-Ls)cmolsiB368
CmoCh18G007460Cucumber (Gy14) v2cgybcmoB600
CmoCh18G007460Melon (DHL92) v3.6.1cmomedB398
CmoCh18G007460Cucumber (Chinese Long) v3cmocucB0484
CmoCh18G007460Wax gourdcmowgoB0539
CmoCh18G007460Cucurbita moschata (Rifu)cmocmoB341
CmoCh18G007460Cucumber (Gy14) v1cgycmoB0790
CmoCh18G007460Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G007460Wild cucumber (PI 183967)cmocpiB398
CmoCh18G007460Wild cucumber (PI 183967)cmocpiB407
CmoCh18G007460Cucumber (Chinese Long) v2cmocuB402
CmoCh18G007460Melon (DHL92) v3.5.1cmomeB347
CmoCh18G007460Watermelon (Charleston Gray)cmowcgB360
CmoCh18G007460Watermelon (97103) v1cmowmB367