CmoCh18G007450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G007450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cmo_Chr18 : 9150990 .. 9154927 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTGTTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCAATTATTGAAAATAAGTCTTTACTAAATGAAATTTCTTGCTTAAAAGAGAAGTATCATAATATTGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTACTTGATAAAGTCAAGTCTCTTGAGCATGATTGTTGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAAAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAGTCTATTAAAATGCTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAAGGAGGTAAGTCATATGGTGATAAAAGAGGATTAGGCTATATTGATGAATGTTCTACACCTTCAAGTTCTAAAACAATATTTGTTAAAGCATCCCCTATCTTGTCTAAATCTAGCAATAAATTTGTATCTAAGTATGATAAATCTAGATTTGTGCCTATATGTCATTATTGTGGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAACATTCCTTTAGGAAGAAAAGTTTCTCAAAATACAAAATTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTATTGCATAATGTTGTTTGTTTTTCATGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATATGAATGCAAATATGAAATGGATTCCTAAATTTGTGAACACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAATGTCAATTTTGAATATCCTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGCTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTGAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGATGATAATGTGTATACTATTGATTTGAATGATTGTCCTACAAATGATAAATGTCTTTCGGTTTTGCTTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGTACTTGATTTCAAATATTTCAAAAAATTCATTAGTTAGAGGTCTTCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTATTAGACCTCTTCAACTACTCCATATGGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTTATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGGTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGGATTTTTAATTACTAAAATTAGGAGTGACCATGGGGGAGAATTTGATAGTGTTGCCTTTCAAAAATTTTGTGAAGATAATGGTCTTTCTCATGACTTCTCCTCTCCAAGGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACCGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTTTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAAAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGGCTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTCTAATTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGACTTACTCGTTAGTGACAACGGCAAGGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCCGAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGACTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGTAATTTTCTTATTGGGAATGATTTTAAAATGGGCAAACTCGACACTACACTCTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTGCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTTAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGGATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAACTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTGTGTCTTTGTGCTAGATTTCAATCTTCTCCTAAGGAATCTCATTTACATGCGGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATTTAG

mRNA sequence

ATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGCTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGACTTACTCGTTAGTGACAACGGCAAGGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCCGAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGACTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGTAATTTTCTTATTGGGAATGATTTTAAAATGGGCAAACTCGACACTACACTCTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTGCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTTAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGGATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGATTTCAATCTTCTCCTAAGGAATCTCATTTACATGCGGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATTTAG

Coding sequence (CDS)

ATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGCTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGACTTACTCGTTAGTGACAACGGCAAGGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAAAGGAACAAAGTTTGGGAATTAGTCCCGAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGACTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGTAATTTTCTTATTGGGAATGATTTTAAAATGGGCAAACTCGACACTACACTCTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTGCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTTAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGGATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGATTTCAATCTTCTCCTAAGGAATCTCATTTACATGCGGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATTTAG

Homology

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BLAST of CmoCh18G007450 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 189.9 bits (481), Expect = 7.6e-47
Identity = 105/293 (35.84%), Postives = 169/293 (57.68%), Query Frame = 1


Query: 266  WILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQ 325
            W  A+  ELN  + N  W +  RP N +I+ ++WVF  K +E GN +R KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 326  EEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFE 385
            +  IDYEETFAPVAR+ + R +L+     N  ++QMDVK+AFLNG + EE+Y+  P G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 386  NVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKLDTTLFI--KIKENDMLL 445
                  +V KL KA+YGLKQA R W++     L   +F    +D  ++I  K   N+ + 
Sbjct: 1026 CNS--DNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 446  VQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQIKQLKDGIFINQEKYT 505
            V +YVDD++  + + +    F + +  +F M+ + E+  F+G++I+  +D I+++Q  Y 
Sbjct: 1086 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYV 1145

Query: 506  KDLLKRFKFNGGKIARTPMST--STKLDKDEKDFNLLLRNLIYMRLREYLNIC 555
            K +L +F         TP+ +  + +L   ++D N   R+LI   +  Y+ +C
Sbjct: 1146 KKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLM--YIMLC 1194

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BLAST of CmoCh18G007450 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.4e-46
Identity = 102/285 (35.79%), Postives = 170/285 (59.65%), Query Frame = 1


Query: 253  EPKSLKDA----ENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDEN 312
            EP+SLK+     E ++  + AMQEE+   ++N  ++LV  P     +  KWVF+ K D +
Sbjct: 810  EPESLKEVLSHPEKNQL-MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGD 869

Query: 313  GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFL 372
              ++R KARLV +G+ Q++GID++E F+PV ++ +IR +L+ A+  +  + Q+DVK+AFL
Sbjct: 870  CKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 929

Query: 373  NGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKL 432
            +G + EE+Y+EQP GFE     H V KL K+LYGLKQAPR WY +  +F+    +     
Sbjct: 930  HGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYS 989

Query: 433  DTTLFIK-IKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQ 492
            D  ++ K   EN+ +++ +YVDD++    +  L  +    +   F+M  +G     LG++
Sbjct: 990  DPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMK 1049

Query: 493  I--KQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDK 531
            I  ++    ++++QEKY + +L+RF     K   TP++   KL K
Sbjct: 1050 IVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSK 1093

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BLAST of CmoCh18G007450 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-21
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1


Query: 235 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRP 294
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LVP P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 295 SNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 352
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

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BLAST of CmoCh18G007450 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-19
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 1


Query: 361 MDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIG 420
           MDV +AFLN  + E +YV+QPPGF N   P +V++L   +YGLKQAP  W + ++N L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 421 NDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGEL 480
             F   + +  L+ +   +  + + +YVDD++  + +P + +   + +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 481 SFFLGLQIKQLKDG-IFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKL 529
             FLGL I Q  +G I ++ + Y        + N  K+ +TP+  S  L
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPL 169

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BLAST of CmoCh18G007450 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-15
Identity = 82/311 (26.37%), Postives = 135/311 (43.41%), Query Frame = 1


Query: 187  VSDNGKEIVTSKEEVSLKEEGSSSMPKEWRYALSHPKDLILGDLEQGVKT--RSSINLF- 246
            +  +G  + T  +   L +E SS   K  R        L   +LE+  K   R+ + L  
Sbjct: 1197 IEASGSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIP 1256

Query: 247  NNLAFVSQIEPKSL---------KDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSI 306
            +N+  VS  + +++          D +    +  A  +EL   +  KV+++  + S + I
Sbjct: 1257 DNMETVSAQKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEI 1316

Query: 307  -----IGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 366
                 + T  +F  K   NG     KAR+V +G  Q     Y            I++ L 
Sbjct: 1317 PDNLIVPTNTIFTKK--RNGIY---KARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLM 1376

Query: 367  FASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRA 426
             A+ +N  +  +D+  AFL   + EE+Y+  P           V KL KALYGLKQ+P+ 
Sbjct: 1377 IANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHD------RRCVVKLNKALYGLKQSPKE 1436

Query: 427  WYDRLSNFLIGNDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMH 481
            W D L  +L G   K       L+    E+  L++ +YVDD +  ++N    +EF   + 
Sbjct: 1437 WNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLK 1493

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BLAST of CmoCh18G007450 vs. TrEMBL
Match: A5BS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043745 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 4.1e-132
Identity = 240/344 (69.77%), Postives = 283/344 (82.27%), Query Frame = 1


Query: 178 IERNFGDLLVSDN---GKEIVTSKEEVS---------LKEEGSSSMPKEWRYALSHPKDL 237
           +E + G L + D    GK     K+E S         ++ E S  +PK+W++ ++HP+D 
Sbjct: 535 LETSMGKLQIEDKRQQGKSGEDPKKEESPLTLPPPQPVQGESSQDLPKDWKFVINHPQDQ 594

Query: 238 ILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWE 297
           I+G+   GV+TRSS+ N+ NNLAF+ QIEPK++KDA  DE W++AMQEELNQFER++VWE
Sbjct: 595 IIGNPXSGVRTRSSLRNICNNLAFIXQIEPKNIKDAIVDENWMIAMQEELNQFERSEVWE 654

Query: 298 LVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAI 357
           LVPRPSN S+IGTKWVFRNKMDENG I+RNKARLVAQGY QE  IDYEETFAPVARLEAI
Sbjct: 655 LVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEXXIDYEETFAPVARLEAI 714

Query: 358 RMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLK 417
           RMLLAFA +K+F+LYQMDVKS FLNG+I EEVY EQPPGF++  FP+HV+KLKKALYGLK
Sbjct: 715 RMLLAFACFKDFILYQMDVKSXFLNGFINEEVYXEQPPGFQSFNFPNHVFKLKKALYGLK 774

Query: 418 QAPRAWYDRLSNFLIGNDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEF 477
           QAPRAWY+RLS FL    FKMGK+DTTLFIK KE DMLLVQIYVDDIIFG+TN SLCE+F
Sbjct: 775 QAPRAWYERLSKFLXKKGFKMGKIDTTLFIKTKEKDMLLVQIYVDDIIFGATNBSLCEDF 834

Query: 478 AKCMHSEFEMSMMGELSFFLGLQIKQLKDGIFINQEKYTKDLLK 509
           +KCMHSEFEMSMMGEL+FFLGLQIKQLK+G FINQ KY KDLL+
Sbjct: 835 SKCMHSEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLQ 878

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BLAST of CmoCh18G007450 vs. TrEMBL
Match: A0A151QU14_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_045365 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 3.0e-127
Identity = 235/357 (65.83%), Postives = 290/357 (81.23%), Query Frame = 1


Query: 198 KEEVSLKEEGSSSMP-KEWRYALSHPKDLILGDLEQGVKTRSSIN-LFNNLAFVSQIEPK 257
           KE+ +++E  ++  P +EWR + +HP + I+GD+ +GV TR+S+    NN++FVS+IE K
Sbjct: 443 KEDSTIQEGQTNINPQREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSFVSEIEVK 502

Query: 258 SLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNK 317
           ++ +A NDE WI AMQEELNQFERN+VW+LV RP+N  IIGTKW+FRNK+DE+G ++RNK
Sbjct: 503 NIDEALNDEHWINAMQEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNK 562

Query: 318 ARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEE 377
           ARLVA+GY QEEGIDYEET+APVARLEAIRMLLA+AS  +F LYQMDVKSAFLNG+I EE
Sbjct: 563 ARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFLNGFIQEE 622

Query: 378 VYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKLDTTLFIK 437
           VYVEQPPGFEN EFP+HV+KLKKALYGLKQAPRAWY+RLS FL+  +F  GK+DTTLFIK
Sbjct: 623 VYVEQPPGFENSEFPNHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKVDTTLFIK 682

Query: 438 IKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQIKQLKDGI 497
            K ND+LLVQIYVDDIIFG+TN  LC+EF+  M SEFEMSMMGEL+FFLGLQI+Q K+GI
Sbjct: 683 RKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQSEFEMSMMGELNFFLGLQIRQTKNGI 742

Query: 498 FINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE-------KDFNLLLRNLIYM 546
           FINQ KY K+LLKRF     K   TPMST+  LDKDE       K +  ++ +L+Y+
Sbjct: 743 FINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEVGKSIDVKKYRGMIGSLLYL 799

[Close]

BLAST of CmoCh18G007450 vs. TrEMBL
Match: A0A151TIF5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_013123 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 3.0e-127
Identity = 236/364 (64.84%), Postives = 292/364 (80.22%), Query Frame = 1


Query: 192 KEIVTSKEEVSLKEEGSSSM--PKEWRYALSHPKDLILGDLEQGVKTRSSIN-LFNNLAF 251
           K+    ++E S  +EG +++   +EWR + +HP + I+GD+ +GV TR+S+    NN++F
Sbjct: 325 KDDKDKEKEDSTIQEGQTNINSEREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSF 384

Query: 252 VSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDEN 311
           VS+IE K++ +A NDE WI AMQEELNQFERN+VW+LV RP+N  IIGTKW+FRNK+DE+
Sbjct: 385 VSEIEVKNIDEALNDEHWINAMQEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEH 444

Query: 312 GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFL 371
           G ++RNKARLVA+GY QEEGIDYEET+APVARLEAIRMLLA+AS  +F LYQMDVKSAFL
Sbjct: 445 GLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFL 504

Query: 372 NGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKL 431
           NG+I EEVYVEQPPGFEN EFP+HV+KLKKALYGLKQAPRAWY+RLS FL+  +F  GK+
Sbjct: 505 NGFIQEEVYVEQPPGFENSEFPNHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKV 564

Query: 432 DTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQI 491
           DTTLFIK K ND+LLVQIYVDDIIFG+TN  LC+EF+  M SEFEMSMMGEL+FFLGLQI
Sbjct: 565 DTTLFIKRKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQSEFEMSMMGELNFFLGLQI 624

Query: 492 KQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE-------KDFNLLLRN 546
           +Q K+GIFINQ KY K+LLKRF     K   TPMST+  LDKDE       K +  ++ +
Sbjct: 625 RQTKNGIFINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEVGKSIDVKKYRGMIGS 684

[Close]

BLAST of CmoCh18G007450 vs. TrEMBL
Match: A0A151TAG4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_018591 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 5.2e-127
Identity = 243/392 (61.99%), Postives = 303/392 (77.30%), Query Frame = 1


Query: 178 IERNFGDLLVSDNGKEIVTSKE-EVSLKEEGSSSM--PKEWRYALSHPKDLILGDLEQGV 237
           I  +F D  +++   +    KE E S  +EG +++   +EWR + +HP + I+GD+ +GV
Sbjct: 431 IVESFEDTHINEQTHKDDKDKEKEDSTIQEGQTNINSQREWRISRNHPLENIIGDITKGV 490

Query: 238 KTRSSIN-LFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTS 297
            TR+S+    NN++FVS+IE K++ +A NDE WI AMQEELNQFERN+VW+LV RP+N  
Sbjct: 491 ITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAMQEELNQFERNQVWDLVNRPTNHP 550

Query: 298 IIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASY 357
           IIGTKW+FRNK+DE+G ++RNKARLVA+GY QEEGIDYEET+APVARLEAIRMLLA+AS 
Sbjct: 551 IIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASI 610

Query: 358 KNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDR 417
            +F LYQMDVKSAFLNG+I EEVYVEQPPGFEN EFP+HV+KLKKALYGLKQAPRAWY+R
Sbjct: 611 MDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFPNHVFKLKKALYGLKQAPRAWYER 670

Query: 418 LSNFLIGNDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFE 477
           LS FL+  +F  GK+DTTLFIK K ND+LLVQIYVDDIIFG+TN  LC+EF+  M SEFE
Sbjct: 671 LSKFLLEKEFTRGKVDTTLFIKRKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQSEFE 730

Query: 478 MSMMGELSFFLGLQIKQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE- 537
           MSMMGEL+FFLGLQI+Q K+GIFINQ KY K+LLKRF     K   TPMST+  LDKDE 
Sbjct: 731 MSMMGELNFFLGLQIRQTKNGIFINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEV 790

Query: 538 ------KDFNLLLRNLIYM---RLREYLNICL 556
                 K +  ++ +L+Y+   R     ++CL
Sbjct: 791 GKSIDVKKYRGMIGSLLYLSTSRPNIMFSVCL 822

[Close]

BLAST of CmoCh18G007450 vs. TrEMBL
Match: A0A151UHG7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_048795 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 2.6e-126
Identity = 226/349 (64.76%), Postives = 279/349 (79.94%), Query Frame = 1


Query: 186  LVSDNGKEIVTSKEEVSLKEEGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFN 245
            L+ +   E+    E +   +E    +PKEW+ +     D I+G++ +GV TRS+I N+ N
Sbjct: 986  LLENEPNEVPKESESLEKAKETCEQLPKEWKTSRDLSMDNIIGNIGKGVSTRSAIKNICN 1045

Query: 246  NLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNK 305
             +AFVSQ+EPK++ +A  DE W++AMQEELNQFERN+VW+LVP P +  IIGTKWVFRNK
Sbjct: 1046 TMAFVSQVEPKNIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYPIIGTKWVFRNK 1105

Query: 306  MDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVK 365
            +DE+G I+RNKARLVA+GY QEEGIDY+ETFAPVAR+EAIR+LLA++S KNF LYQMDVK
Sbjct: 1106 LDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSIKNFKLYQMDVK 1165

Query: 366  SAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFK 425
            SAFLNG+I EEVYVEQPPGF + + P+HVYKLKKALYGLKQAPR+WYDRLS FLI ND++
Sbjct: 1166 SAFLNGFIQEEVYVEQPPGFVDYKNPNHVYKLKKALYGLKQAPRSWYDRLSKFLIENDYE 1225

Query: 426  MGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFL 485
             GK+D TLF+K  +ND + VQIYVDDI+FGSTN SLC+EFAK M  EFEMSMMGEL+FFL
Sbjct: 1226 RGKVDNTLFVKKFKNDTMYVQIYVDDIVFGSTNTSLCKEFAKTMQGEFEMSMMGELTFFL 1285

Query: 486  GLQIKQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEK 534
            GLQIKQ+ DGIFI+Q KY  +LLK+F   G K A TP+S +  LD DEK
Sbjct: 1286 GLQIKQMHDGIFISQSKYCNELLKKFGMEGCKEAATPISNNCNLDLDEK 1334

[Close]

BLAST of CmoCh18G007450 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 213.0 bits (541), Expect = 4.7e-55
Identity = 120/306 (39.22%), Postives = 175/306 (57.19%), Query Frame = 1


Query: 253 EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIM 312
           EP +  +A+    W  AM +E+   E    WE+   P N   IG KWV++ K + +G I 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 313 RNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYI 372
           R KARLVA+GY Q+EGID+ ETF+PV +L +++++LA ++  NF L+Q+D+ +AFLNG +
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 373 MEEVYVEQPPGFENVEF----PHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKL 432
            EE+Y++ PPG+   +     P+ V  LKK++YGLKQA R W+ + S  LIG  F     
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264

Query: 433 DTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQI 492
           D T F+KI     L V +YVDDII  S N +  +E    + S F++  +G L +FLGL+I
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

Query: 493 KQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDK-------DEKDFNLLLRN 548
            +   GI I Q KY  DLL      G K +  PM  S            D K +  L+  
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGR 384

[Close]

BLAST of CmoCh18G007450 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-22
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1


Query: 235 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRP 294
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LVP P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 295 SNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 352
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

[Close]

BLAST of CmoCh18G007450 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-07
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 446 IYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQIKQLKDGIFINQEKYTKD 505
           +YVDDI+   ++ +L       + S F M  +G + +FLG+QIK    G+F++Q KY + 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 506 LLKRFKFNGGKIARTPMST----------STKLDKDEKDFNLLLRNLIYMRL 548
           +L     N G +   PMST          ST    D  DF  ++  L Y+ L
Sbjct: 65  ILN----NAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTL 112

[Close]

BLAST of CmoCh18G007450 vs. NCBI nr
Match: gi|778708530|ref|XP_011656225.1| (PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus])

HSP 1 Score: 583.9 bits (1504), Expect = 2.9e-163
Identity = 288/354 (81.36%), Postives = 320/354 (90.40%), Query Frame = 1


Query: 166 DNKKGKIIGKGTIERNFGDLLVSDNGKEIVTSKEEVSL---KEEGSSSMPKEWRYALSHP 225
           +N   + I    +E++FGDLLV+D GKEIV S ++V++   KEEGSSS+PK WRYALSH 
Sbjct: 350 NNVSNESICSDDLEKDFGDLLVNDKGKEIVPSMQDVNIIEKKEEGSSSLPKVWRYALSHL 409

Query: 226 KDLILGDLEQGVKTRSSINLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKV 285
           KDLIL + EQGVKTRSS+NLF+NLAFVSQIEP+S KDAE DEFWILAMQEELNQFERNKV
Sbjct: 410 KDLILSNPEQGVKTRSSLNLFSNLAFVSQIEPRSFKDAECDEFWILAMQEELNQFERNKV 469

Query: 286 WELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLE 345
           W+LVPRPSN SIIGTKWVFRNKMDENGNI+RNKARLVAQGYCQEEGIDYEETFAPVARLE
Sbjct: 470 WKLVPRPSNASIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEETFAPVARLE 529

Query: 346 AIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYG 405
           AIRMLLAFASYKNF+LYQMDVKS FLNGYI+E+ YVEQP  FE+ + P+HVYKLKKALYG
Sbjct: 530 AIRMLLAFASYKNFILYQMDVKSDFLNGYIVEKFYVEQPXAFESFDLPNHVYKLKKALYG 589

Query: 406 LKQAPRAWYDRLSNFLIGNDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCE 465
           LKQAPRAWYDRLS FL+ NDFKMGK+D TLFIK+K NDML+VQIYVDDIIFGSTN SLCE
Sbjct: 590 LKQAPRAWYDRLSKFLLENDFKMGKIDNTLFIKVKNNDMLIVQIYVDDIIFGSTNSSLCE 649

Query: 466 EFAKCMHSEFEMSMMGELSFFLGLQIKQLKDGIFINQEKYTKDLLKRFKFNGGK 517
           EF+KCMH+EFEMSMMGELSFFLGLQIKQLKDGIFI+QEKYT+DLLK+FK N GK
Sbjct: 650 EFSKCMHNEFEMSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGK 703

[Close]

BLAST of CmoCh18G007450 vs. NCBI nr
Match: gi|951067564|ref|XP_014524275.1| (PREDICTED: uncharacterized protein LOC106780495 [Vigna radiata var. radiata])

HSP 1 Score: 484.2 bits (1245), Expect = 3.1e-133
Identity = 257/458 (56.11%), Postives = 325/458 (70.96%), Query Frame = 1


Query: 95  SGSDEEVANFCFMAHSDKEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNPSKFVNL 154
           S SDEE AN C MA  D   ++         L  S+K  W LDSGCS+HMTG+ +KF N 
Sbjct: 342 SDSDEE-ANICLMADDDNTSQE---------LSNSRKFMWCLDSGCSKHMTGDKTKFANF 401

Query: 155 SKKDGGLVTFGDNKKGKIIGKGTIERN----FGDLL--------------VSDNGKEI-- 214
            KK+ G VT+GDN KG+I+GKG I         D+L              + D G ++  
Sbjct: 402 RKKEQGFVTYGDNNKGRILGKGDIGNQDTLMIKDVLYVEGLRHNLISISQLCDKGLKVKP 461

Query: 215 VTSKEEVSLKEEGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSINLFNNLAFVSQIEP 274
           + S+E V+   E  S +P E +YA  +P+D  L  + Q  +  S  N+  ++     IEP
Sbjct: 462 LESEESVAGSSENLSKIPTEEKYA--NPQDEELSKIWQQPRGLSLDNIIGDIT--KGIEP 521

Query: 275 KSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRN 334
           K++K+A  +E W +AMQEELNQFERN+VWEL+PR     +IGTKWVFRNK+DE GNI +N
Sbjct: 522 KNIKEALQEEQWCIAMQEELNQFERNQVWELIPRKDTHQVIGTKWVFRNKLDEEGNITKN 581

Query: 335 KARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIME 394
           KARLVAQGY QEEGI+Y+ET+APVARLEAIR+LLA+AS   F L+QMDVKSAFLNGYI E
Sbjct: 582 KARLVAQGYNQEEGINYDETYAPVARLEAIRLLLAYASIMKFKLFQMDVKSAFLNGYIKE 641

Query: 395 EVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKLDTTLFI 454
           +VYVEQPPGFE+ + P+H+YKLKKALYGLKQAPR+WY+RLSNFL+ NDF  GK+D+TLFI
Sbjct: 642 DVYVEQPPGFEDFKHPNHIYKLKKALYGLKQAPRSWYERLSNFLLENDFSRGKIDSTLFI 701

Query: 455 KIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQIKQLKDG 514
           K +    L++Q+YVDDIIFGS+N +LC+ FAK M  EFEMSMMGEL++FLGLQIKQ K+G
Sbjct: 702 KREGKHFLIIQVYVDDIIFGSSNKTLCQNFAKTMQGEFEMSMMGELTYFLGLQIKQKKEG 761

Query: 515 IFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE 533
            FI+Q KY K++LK+F+ +  K A TPM TS  LDKDE
Sbjct: 762 TFISQTKYCKEILKKFEIDESKEASTPMGTSCYLDKDE 785

[Close]

BLAST of CmoCh18G007450 vs. NCBI nr
Match: gi|147784677|emb|CAN63777.1| (hypothetical protein VITISV_043745 [Vitis vinifera])

HSP 1 Score: 479.9 bits (1234), Expect = 5.9e-132
Identity = 240/344 (69.77%), Postives = 283/344 (82.27%), Query Frame = 1


Query: 178 IERNFGDLLVSDN---GKEIVTSKEEVS---------LKEEGSSSMPKEWRYALSHPKDL 237
           +E + G L + D    GK     K+E S         ++ E S  +PK+W++ ++HP+D 
Sbjct: 535 LETSMGKLQIEDKRQQGKSGEDPKKEESPLTLPPPQPVQGESSQDLPKDWKFVINHPQDQ 594

Query: 238 ILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWE 297
           I+G+   GV+TRSS+ N+ NNLAF+ QIEPK++KDA  DE W++AMQEELNQFER++VWE
Sbjct: 595 IIGNPXSGVRTRSSLRNICNNLAFIXQIEPKNIKDAIVDENWMIAMQEELNQFERSEVWE 654

Query: 298 LVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAI 357
           LVPRPSN S+IGTKWVFRNKMDENG I+RNKARLVAQGY QE  IDYEETFAPVARLEAI
Sbjct: 655 LVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEXXIDYEETFAPVARLEAI 714

Query: 358 RMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLK 417
           RMLLAFA +K+F+LYQMDVKS FLNG+I EEVY EQPPGF++  FP+HV+KLKKALYGLK
Sbjct: 715 RMLLAFACFKDFILYQMDVKSXFLNGFINEEVYXEQPPGFQSFNFPNHVFKLKKALYGLK 774

Query: 418 QAPRAWYDRLSNFLIGNDFKMGKLDTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEF 477
           QAPRAWY+RLS FL    FKMGK+DTTLFIK KE DMLLVQIYVDDIIFG+TN SLCE+F
Sbjct: 775 QAPRAWYERLSKFLXKKGFKMGKIDTTLFIKTKEKDMLLVQIYVDDIIFGATNBSLCEDF 834

Query: 478 AKCMHSEFEMSMMGELSFFLGLQIKQLKDGIFINQEKYTKDLLK 509
           +KCMHSEFEMSMMGEL+FFLGLQIKQLK+G FINQ KY KDLL+
Sbjct: 835 SKCMHSEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLQ 878

[Close]

BLAST of CmoCh18G007450 vs. NCBI nr
Match: gi|1012355625|gb|KYP66812.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 463.8 bits (1192), Expect = 4.3e-127
Identity = 236/364 (64.84%), Postives = 292/364 (80.22%), Query Frame = 1


Query: 192 KEIVTSKEEVSLKEEGSSSM--PKEWRYALSHPKDLILGDLEQGVKTRSSIN-LFNNLAF 251
           K+    ++E S  +EG +++   +EWR + +HP + I+GD+ +GV TR+S+    NN++F
Sbjct: 325 KDDKDKEKEDSTIQEGQTNINSEREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSF 384

Query: 252 VSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDEN 311
           VS+IE K++ +A NDE WI AMQEELNQFERN+VW+LV RP+N  IIGTKW+FRNK+DE+
Sbjct: 385 VSEIEVKNIDEALNDEHWINAMQEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEH 444

Query: 312 GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFL 371
           G ++RNKARLVA+GY QEEGIDYEET+APVARLEAIRMLLA+AS  +F LYQMDVKSAFL
Sbjct: 445 GLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFL 504

Query: 372 NGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKL 431
           NG+I EEVYVEQPPGFEN EFP+HV+KLKKALYGLKQAPRAWY+RLS FL+  +F  GK+
Sbjct: 505 NGFIQEEVYVEQPPGFENSEFPNHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKV 564

Query: 432 DTTLFIKIKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQI 491
           DTTLFIK K ND+LLVQIYVDDIIFG+TN  LC+EF+  M SEFEMSMMGEL+FFLGLQI
Sbjct: 565 DTTLFIKRKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQSEFEMSMMGELNFFLGLQI 624

Query: 492 KQLKDGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE-------KDFNLLLRN 546
           +Q K+GIFINQ KY K+LLKRF     K   TPMST+  LDKDE       K +  ++ +
Sbjct: 625 RQTKNGIFINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEVGKSIDVKKYRGMIGS 684

[Close]

BLAST of CmoCh18G007450 vs. NCBI nr
Match: gi|1012321187|gb|KYP33754.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 463.8 bits (1192), Expect = 4.3e-127
Identity = 235/357 (65.83%), Postives = 290/357 (81.23%), Query Frame = 1


Query: 198 KEEVSLKEEGSSSMP-KEWRYALSHPKDLILGDLEQGVKTRSSIN-LFNNLAFVSQIEPK 257
           KE+ +++E  ++  P +EWR + +HP + I+GD+ +GV TR+S+    NN++FVS+IE K
Sbjct: 443 KEDSTIQEGQTNINPQREWRISRNHPLENIIGDITKGVITRNSLKEACNNMSFVSEIEVK 502

Query: 258 SLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNK 317
           ++ +A NDE WI AMQEELNQFERN+VW+LV RP+N  IIGTKW+FRNK+DE+G ++RNK
Sbjct: 503 NIDEALNDEHWINAMQEELNQFERNQVWDLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNK 562

Query: 318 ARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEE 377
           ARLVA+GY QEEGIDYEET+APVARLEAIRMLLA+AS  +F LYQMDVKSAFLNG+I EE
Sbjct: 563 ARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMDFKLYQMDVKSAFLNGFIQEE 622

Query: 378 VYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRAWYDRLSNFLIGNDFKMGKLDTTLFIK 437
           VYVEQPPGFEN EFP+HV+KLKKALYGLKQAPRAWY+RLS FL+  +F  GK+DTTLFIK
Sbjct: 623 VYVEQPPGFENSEFPNHVFKLKKALYGLKQAPRAWYERLSKFLLEKEFTRGKVDTTLFIK 682

Query: 438 IKENDMLLVQIYVDDIIFGSTNPSLCEEFAKCMHSEFEMSMMGELSFFLGLQIKQLKDGI 497
            K ND+LLVQIYVDDIIFG+TN  LC+EF+  M SEFEMSMMGEL+FFLGLQI+Q K+GI
Sbjct: 683 RKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQSEFEMSMMGELNFFLGLQIRQTKNGI 742

Query: 498 FINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDE-------KDFNLLLRNLIYM 546
           FINQ KY K+LLKRF     K   TPMST+  LDKDE       K +  ++ +L+Y+
Sbjct: 743 FINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEVGKSIDVKKYRGMIGSLLYL 799

The following BLAST results are available for this feature:

BLAST of CmoCh18G007450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	7.6e-47	35.84	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	6.4e-46	35.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M820_ARATH	7.1e-21	46.72	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YCH4_YEAST	2.3e-19	31.36	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
YH41B_YEAST	1.2e-15	26.37	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh18G007450 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BS59_VITVI	4.1e-132	69.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043745 PE=4 SV=1	[more]
A0A151QU14_CAJCA	3.0e-127	65.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TIF5_CAJCA	3.0e-127	64.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TAG4_CAJCA	5.2e-127	61.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151UHG7_CAJCA	2.6e-126	64.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmoCh18G007450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.7e-55	39.22	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.0e-22	46.72	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	2.8e-07	32.14	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh18G007450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708530\|ref\|XP_011656225.1\|	2.9e-163	81.36	PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transpos...	[more]
gi\|951067564\|ref\|XP_014524275.1\|	3.1e-133	56.11	PREDICTED: uncharacterized protein LOC106780495 [Vigna radiata var. radiata]	[more]
gi\|147784677\|emb\|CAN63777.1\|	5.9e-132	69.77	hypothetical protein VITISV_043745 [Vitis vinifera]	[more]
gi\|1012355625\|gb\|KYP66812.1\|	4.3e-127	64.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012321187\|gb\|KYP33754.1\|	4.3e-127	65.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR013103	RVT_2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G007450.1	CmoCh18G007450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 47..70 score: 9.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 55..70 score: 5.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 55..71 score: 0
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 56..70 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 42..76 score: 8.5
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 280..523 score: 7.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 56..534 score: 2.4E-177coord: 5..28 score: 2.4E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 56..534 score: 2.4E-177coord: 5..28 score: 2.4E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 279..508 score: 4.67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G007450	Wild cucumber (PI 183967)	cmocpiB398
CmoCh18G007450	Wild cucumber (PI 183967)	cmocpiB407
CmoCh18G007450	Cucumber (Chinese Long) v2	cmocuB402
CmoCh18G007450	Melon (DHL92) v3.5.1	cmomeB347
CmoCh18G007450	Watermelon (Charleston Gray)	cmowcgB360
CmoCh18G007450	Watermelon (97103) v1	cmowmB367
CmoCh18G007450	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G007450	Bottle gourd (USVL1VR-Ls)	cmolsiB368
CmoCh18G007450	Cucumber (Gy14) v2	cgybcmoB600
CmoCh18G007450	Melon (DHL92) v3.6.1	cmomedB398
CmoCh18G007450	Cucumber (Chinese Long) v3	cmocucB0484
CmoCh18G007450	Wax gourd	cmowgoB0539
CmoCh18G007450	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh18G007450	Cucumber (Gy14) v1	cgycmoB0790
CmoCh18G007450	Cucurbita maxima (Rimu)	cmacmoB406