CmoCh18G006570 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G006570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCytochrome c biogenesis protein CcsA
LocationCmo_Chr18 : 8326125 .. 8326492 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAATCCCCACTACTAGTTCCCACTCTCCAATCTCATTGGTTAATGATGCACGTAAGCATGATGATATTGGGTTATGCATCTCTTTTATGTGGATCATTATTTCAGTAGCTCTTATAGTGATTACCTTTCAAAACTCTATAAGAATTTTTGGTAAAAACAATCATTTATTAAATGCGTTATTTTCCTTAAGAGAACAATGTTTTACGAAACACTTATTTTTTTCTTATAATAATTATTATAAGTCTCAACTGATTCAACAATCAGATCATTGGAGTTATCGTATTATTAGTCTAGGCTTTATCTTTTTAAGCATAGGTATTCTTTCAGGGGCCGTAGCGGCTAATGAGACATGGGGATCGTAA

mRNA sequence

ATGCATCAATCCCCACTACTAGTTCCCACTCTCCAATCTCATTGGTTAATGATGCACGTAAGCATGATGATATTGGTAGCTCTTATAGTGATTACCTTTCAAAACTCTATAAGAATTTTTGGTAAAAACAATCATTTATTAAATGCGTTATTTTCCTTAAGAGAACAATGTTTTACGAAACACTTATTTTTTTCTTATAATAATTATTATAAGTCTCAACTGATTCAACAATCAGATCATTGGAGTTATCGTATTATTAGTCTAGGCTTTATCTTTTTAAGCATAGGTATTCTTTCAGGGGCCGTAGCGGCTAATGAGACATGGGGATCGTAA

Coding sequence (CDS)

ATGCATCAATCCCCACTACTAGTTCCCACTCTCCAATCTCATTGGTTAATGATGCACGTAAGCATGATGATATTGGTAGCTCTTATAGTGATTACCTTTCAAAACTCTATAAGAATTTTTGGTAAAAACAATCATTTATTAAATGCGTTATTTTCCTTAAGAGAACAATGTTTTACGAAACACTTATTTTTTTCTTATAATAATTATTATAAGTCTCAACTGATTCAACAATCAGATCATTGGAGTTATCGTATTATTAGTCTAGGCTTTATCTTTTTAAGCATAGGTATTCTTTCAGGGGCCGTAGCGGCTAATGAGACATGGGGATCGTAA
Homology
[Close]
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match: CCSA_CUCSA (Cytochrome c biogenesis protein CcsA OS=Cucumis sativus GN=ccsA PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.2e-38
Identity = 92/130 (70.77%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQ +IRIF KNN+LLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYAALLCGSLFSVALIVITFQKAIRIFCKNNNLLN 182

Query: 61  ALFSLRE-------QCFTKHL-FFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E         F ++  FFS  NYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFNEIQYINEGNYFVRNTSFFSSKNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein CcsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-30
Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQS +LVP LQS WLMMHVSMM+L            VAL+VITF+  IRI  KNNH LN
Sbjct: 121 MHQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRQDIRILCKNNHFLN 180

Query: 61  ALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
             FS  E               F S  NYY++Q IQQ DHWSYR+ISLGF+FL+IGILSG
Sbjct: 181 KSFSFDEIQYMNKGNNVLQNTSFLSVRNYYRAQFIQQLDHWSYRVISLGFLFLTIGILSG 240

[Close]
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match: CCSA_PLAOC (Cytochrome c biogenesis protein CcsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29
Identity = 73/130 (56.15%), Postives = 87/130 (66.92%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQS +LVP LQS WLMMHVSMM+L            +AL+VI F+ +I IFGK+N+LL 
Sbjct: 121 MHQSAILVPALQSQWLMMHVSMMVLSYAALLCGSLLSIALLVIRFRKNIEIFGKDNYLLI 180

Query: 61  ALFSLREQCFTKHL--------FFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
             FS  E  +            F S+ NYY+ QLIQQ DHWSYR+ISLGFIFL+IGILSG
Sbjct: 181 GSFSFGESQYVNERSNILRNTSFLSFRNYYRYQLIQQLDHWSYRVISLGFIFLTIGILSG 240

[Close]
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match: CCSA_CARPA (Cytochrome c biogenesis protein CcsA OS=Carica papaya GN=ccsA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 77/130 (59.23%), Postives = 85/130 (65.38%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           M QS +LVP LQS WLMMHVSMM+L            VAL+VITF+  IRIFGK+N+ LN
Sbjct: 122 MSQSVILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKVIRIFGKSNNFLN 181

Query: 61  ALFSL--------REQCFTKHLFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
             FS         R        F S  NYY+ QLIQQ DHWSYRIISLGFIFL+IGILSG
Sbjct: 182 ESFSFGKIQYMNERSNILLNTSFLSSRNYYRYQLIQQLDHWSYRIISLGFIFLTIGILSG 241

[Close]
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match: CCSA_PANGI (Cytochrome c biogenesis protein CcsA OS=Panax ginseng GN=ccsA PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-29
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           +HQS +LVP LQS WL+MHVSMMIL            VAL+VITF+ +  IF K N LLN
Sbjct: 121 IHQSAILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRKNRNIFCKRNPLLN 180

Query: 61  ALFSLREQCFTKH-------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSGA 111
            LFS  E  +           FFS  NYY+SQLIQQ D+WSYR+ISLGFIFL+IGILSGA
Sbjct: 181 ELFSFGEIQYMNERNNVLRTTFFSAKNYYRSQLIQQLDYWSYRVISLGFIFLTIGILSGA 240

[Close]
BLAST of CmoCh18G006570 vs. TrEMBL
Match: A0A0S2IGF9_CUCPE (Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo subsp. ovifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. TrEMBL
Match: A0A0S2IF94_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucurbita lundelliana GN=ccsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. TrEMBL
Match: A0A0S2IFF6_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucurbita okeechobeensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. TrEMBL
Match: A0A0S2IFX9_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucurbita okeechobeensis subsp. martinezii GN=ccsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. TrEMBL
Match: A0A0S2IDS3_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucurbita argyrosperma subsp. sororia GN=ccsA PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. TAIR10
Match: ATCG01040.1 (ATCG01040.1 Cytochrome C assembly protein)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-24
Identity = 72/136 (52.94%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNN---- 60
           M QS +LVP LQS WLMMHVSMMIL            +AL+VITF+     F K N    
Sbjct: 124 MPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKN 183

Query: 61  HLLNALFSL---------REQCFTKHLFFSYN-NYYKSQLIQQSDHWSYRIISLGFIFLS 111
            LLN LFS                +++ FS++ NYY+ QLIQQ D WS+RIISLGFIFL+
Sbjct: 184 FLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFIFLT 243

[Close]
BLAST of CmoCh18G006570 vs. NCBI nr
Match: gi|952955250|gb|ALO22601.1| (CcsA (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. NCBI nr
Match: gi|952955043|gb|ALO22397.1| (CcsA (plastid) [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. NCBI nr
Match: gi|952954388|gb|ALO21752.1| (CcsA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. NCBI nr
Match: gi|952955423|gb|ALO22771.1| (CcsA (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40
Identity = 97/130 (74.62%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSYNNYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYNNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

[Close]
BLAST of CmoCh18G006570 vs. NCBI nr
Match: gi|952954704|gb|ALO22063.1| (CcsA (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39
Identity = 96/130 (73.85%), Postives = 98/130 (75.38%), Query Frame = 1 

Query: 1   MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLN 60
           MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLN
Sbjct: 123 MHQSPLLVPALQSHWLMMHVSMMVLGYASLLCGSLFSVALIVITFQNSIRIFGKNNHLLN 182

Query: 61  ALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSG 111
           ALFS  E  +            FFSY NYYKSQLIQQ DHWSYRIISLGFIFLSIGILSG
Sbjct: 183 ALFSFDEIQYMNEENNVLRNTYFFSYKNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSG 242

The following BLAST results are available for this feature:
BLAST of CmoCh18G006570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCSA_CUCSA8.2e-3870.77Cytochrome c biogenesis protein CcsA OS=Cucumis sativus GN=ccsA PE=3 SV=1[more]
CCSA_VITVI6.3e-3057.69Cytochrome c biogenesis protein CcsA OS=Vitis vinifera GN=ccsA PE=3 SV=1[more]
CCSA_PLAOC1.4e-2956.15Cytochrome c biogenesis protein CcsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1[more]
CCSA_CARPA1.8e-2959.23Cytochrome c biogenesis protein CcsA OS=Carica papaya GN=ccsA PE=3 SV=1[more]
CCSA_PANGI5.3e-2958.91Cytochrome c biogenesis protein CcsA OS=Panax ginseng GN=ccsA PE=3 SV=1[more]
BLAST of CmoCh18G006570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IGF9_CUCPE3.6e-4074.62Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo subsp. ovifera GN=ccsA PE... [more]
A0A0S2IF94_9ROSI3.6e-4074.62Cytochrome c biogenesis protein CcsA OS=Cucurbita lundelliana GN=ccsA PE=3 SV=1[more]
A0A0S2IFF6_9ROSI3.6e-4074.62Cytochrome c biogenesis protein CcsA OS=Cucurbita okeechobeensis GN=ccsA PE=3 SV... [more]
A0A0S2IFX9_9ROSI3.6e-4074.62Cytochrome c biogenesis protein CcsA OS=Cucurbita okeechobeensis subsp. martinez... [more]
A0A0S2IDS3_9ROSI3.6e-4074.62Cytochrome c biogenesis protein CcsA OS=Cucurbita argyrosperma subsp. sororia GN... [more]
BLAST of CmoCh18G006570 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01040.12.5e-2452.94ATCG01040.1 Cytochrome C assembly protein[more]
BLAST of CmoCh18G006570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952955250|gb|ALO22601.1|5.1e-4074.62CcsA (plastid) [Cucurbita pepo subsp. fraterna][more]
gi|952955043|gb|ALO22397.1|5.1e-4074.62CcsA (plastid) [Cucurbita moschata][more]
gi|952954388|gb|ALO21752.1|5.1e-4074.62CcsA (plastid) [Cucurbita argyrosperma][more]
gi|952955423|gb|ALO22771.1|5.1e-4074.62CcsA (plastid) [Cucurbita pepo subsp. pepo][more]
gi|952954704|gb|ALO22063.1|2.6e-3973.85CcsA (plastid) [Cucurbita ecuadorensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002541Cyt_c_assembly
Vocabulary: Biological Process
TermDefinition
GO:0017004cytochrome complex assembly
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
cellular_component GO:0009507 chloroplast
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0020037 heme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006570.1CmoCh18G006570.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002541Cytochrome c assembly proteinPFAMPF01578Cytochrom_C_asmcoord: 1..110
score: 1.4
NoneNo IPR availablePANTHERPTHR30071HEME EXPORTER PROTEIN Ccoord: 1..49
score: 7.9E-34coord: 75..110
score: 7.9
NoneNo IPR availablePANTHERPTHR30071:SF8CYTOCHROME C BIOGENESIS PROTEIN CCSAcoord: 1..49
score: 7.9E-34coord: 75..110
score: 7.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G006570Silver-seed gourdcarcmoB0944
CmoCh18G006570Wax gourdcmowgoB0543
CmoCh18G006570Cucumber (Chinese Long) v3cmocucB0488
CmoCh18G006570Watermelon (97103) v2cmowmbB391
CmoCh18G006570Cucurbita moschata (Rifu)cmocmoB337
CmoCh18G006570Cucumber (Gy14) v1cgycmoB0120
CmoCh18G006570Cucurbita maxima (Rimu)cmacmoB410
CmoCh18G006570Cucurbita maxima (Rimu)cmacmoB707
CmoCh18G006570Wild cucumber (PI 183967)cmocpiB412
CmoCh18G006570Cucumber (Chinese Long) v2cmocuB407
CmoCh18G006570Melon (DHL92) v3.5.1cmomeB345
CmoCh18G006570Watermelon (Charleston Gray)cmowcgB336
CmoCh18G006570Watermelon (97103) v1cmowmB393
CmoCh18G006570Cucurbita pepo (Zucchini)cmocpeB374
CmoCh18G006570Cucurbita pepo (Zucchini)cmocpeB393
CmoCh18G006570Bottle gourd (USVL1VR-Ls)cmolsiB365
CmoCh18G006570Cucumber (Gy14) v2cgybcmoB604
CmoCh18G006570Melon (DHL92) v3.6.1cmomedB396