CmoCh18G006480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G006480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Magnesium transporter NIPA2
Location	Cmo_Chr18 : 8142935 .. 8146525 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACATTTGAGAAGCAAAGGGGGAAATTTGTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCCTTTCTGCCATTTCGATCCAATCCAAGCAACGCCCCCAGCTGTATCCAGTTTCTCTTCACCCAGCGGGGCCTCTCTTTATAAGCGCCGACATACCCATCAACCCTTTGATCTTTCGCTCCATTCATCTTCAAATCTTCCCTTTCGATTTACACCCATTTCTATTTCCGTTACTGGGTACCGACGCCCTTGAATCAGCGCTCGATGAACTAGCCACTGCTTGCTTCATCGCTTCTTCCTCAGCCATGGCGGCCGAGCCTCCCAGTTGGCACGAAGGCATCTCCTCGGACAATACCAAAGGCTTCATTCTTGCTCTTTCTTCCAGCTTCTTCATCGGTGGGAGCTTCATTGTCAAGAAGAAGGGCTTGAAGAAAGCCGGTGCGTCGGGAATCAGAGCAGGTACGATTCTTCGGAAATTGTTTGATGTTCAATGTGTGTTTGGATTTTTTCGTTTTAGTTCGATTGATTTCTGTTTTCTGAATCGAAGCACGTTTTGATCCGATATGGTAATATGAGATTGATTTGATAATGTTTTTTATACTCTGGATTGGCGTCCTGCCATGCTTGATTTCTTTTAGTTTTGTTGTGATTTTGCTGATTGAATCCTTTCAGGAGCTGGCGGATTTACTTACTTATATGAGCCATTGTGGTGGTTGGGCATGATAACAAGTGAGTTTTAAGCGTTCTTGGCGATTGGTTATTGATGTTTATGATTTCAAATTGAAGAACAGTAATAATCAAATCTTCCATTTCATAAGTAACTGATCTGTTCTCTTAAACTGGTTGAAACATCGATTCTTGAAAGTTCTTTTGATTCTGTCTTCTTTGTTTATAAGATCGCCCACGGCTAGCATACATTGTCCATTTTGGCCCGTTACGTTTCACTATTAGCCTCACGATTTTAAAACGCATCTATTAGGGAGGGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTTCGTTCCCCATTCTTGCACTCTAGATGAATCTCTATGGACTTTACCTCGGCCATAGTTATAAATTTTTGCTATTTTTATGTATTAATCATAAACCAAATGAGTTCTTCATAGTTGGAAAGTGAATTTGGATATAGATCTGATGGATTTCTATCATTTCAACAGTGATTGTTGGAGAAATTGCTAACTTTGTGGCATACGCATTTGCACCAGCCTTATTAGTCACTCCTTTGGGAGCTCTCAGCATCATAATCAGGCATGGATCAAACATTGCTCAAACTTAAAGCTTAATTTTGTTGGTTTCAATCCTAATTTCGGATCTCGTCGTCCTACAGTGCTGTTCTTGCACATATCATTTTACAGGAGAAGCTACACATTTTTGGAGTTCTTGGTTGTATACTATGCGTGGTCGGTTCCACAACGATTGTTCTTCATGCTCCCCAAGAACGTGAGATCGAATCCGTGACCGAAGTTTGGCAAATGGCAATGGAGCCAGGTACAAAGCTGCCTGGATTCAGTTGTTTCGTTTCAGTATATCGTTTTCTTTTCGACTTAACCAACAATGAACTCTTTTCCATGGCAGCTTTTCTTTTGTATGCAACTCTGGTCATAACTTCTGCAGTTATACTCATATTCCACTTTATACCTCAATATGGTGAGACACACATAATGGTTTATATCGGAGTTTGTTCCCTATTAGGTTCGTTATCGGTACGTATGCTACGTTCTTCGTTAACTGCTCATTAGCTTTTGTTTCCTTTGCATCATTTCTTCATGGTTAGGGAAAAGAAAGTTGAATGGTTCATTACTATGCAGGTTATGGGTGTTAAAGCTCTTGGAATTGCCATGAAGTTGACATTATCTGGAGTGAACCAGCTAGTTTATCCACAAACTTGGATTTTTGCAATACTTGTAGCCACATTTTTGCTGACCCAGATGAATTATCTGAACAAGGTAGCCATGCTTTTTTCTTTCCAGTTTCTCTCGTTTTCTCGTGCTGCCATCTTTGAGTGATCCCTCCTATTCGTTCCCGTTGTCGATCCTGCAGAGTTTATATGTTGAAGAGAATCTTGCTGCTATATAATAAGAAATACAGTAGTTTGACTGATAATCCATAAATTTACTGCCACTTTTTCATGCATGGTTCATTTTTGTAACGGTCTGAGCCCACCGCTAGTAGATATTGTCCTTTTTGGGCTTCTCTTCAAGGATTTAAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCGTATAAAGAATGTTTCGTTCTCCTCCCTAACTGATGTGGGATCTCACAATCCACCCCTCTTCGGGGCTCAGCGTCCTTGCTGGCACTCGTTCCCTTCTCCAATTGATGTGGAACCCCCCAATCCACCCCCCTTCGCGGCCCAGCGTCCTTGTTGGCACACCGCCTCATGTCCACCACTCTTCGGGGTCCATCGTCCTCGTTGACACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACTCTCATTCAGGGTCCCAACATCCTTGCTGGCACACAGCCTCGTGTCCACCCCCCTTCAGGGCCCAGCGTCTTCGTTAGCACTCGTTCCCTTCTCCGATCGATGTGGAACCCCTAAATCCACCTCCCTTCAAGGCCTAACGTCCTTGTTGGCACACCGCCTCGTATCCACCCTCCTTTGGAGCTCATCCTCCTCGCTGGCACATCGCCCCGTGTCTGGCTCTGAGACCATTTGTAACAACTCAAACCCACTGCTAGCAGATATTGTTCTCTTCCGGACTTCCCTTCAAGGTTTTTAAAATGCGTCTACTAGGGGGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAACCGATATGAGATCTCACAAATTTCCACCTTGAAAAATGATGTGTACCTATTTCAATACGATAATTTAACACGAAATGGAGATGATCTATCATGATTCGTGCTGTACTTGTTTACCTTTTCTTCTCCTTCTCATTGCAGGCCCTTGATACTTTTAACACTGCTGTTGTATCTCCCATATACTACGTGATGTTCACATCACTGACCATTTTGGCAAGTGTTATCATGTTTAAGGTACATTCATAATATGTTTCGACATGTTTTTCGCAATTGATTGGTAATTAATACGCTTACTAGAACGTGTTTCTCAACAAGTATGCAACATATTTATGTCCTTTTAGACTCGTTCTATGCCTCTTCGGCGTCATTCATCGTAAGATGTCAATACCGACACAGCGATAACAATTGATCATTCACTTTCAGGATTGGGATAGGCAGAGCCCAGCACAAGTCATCACAGAATTATGTGGCTTTGTGACTATTCTTTCAGGAACCTTTCTTCTTCACAAAACAAAAGACATGGTTGATGGTAAGTAAGCGCATCGACCTTTTTCACATTGACTGATTTTACACAGCTTGTCTTACTCCGGTGTTCGGTTTCCAAATCCTACAGGTTTATCGACATCGTCGCCAATTCGACTTCCAAAGCACGTGGACGATGACAGATATAACGGCTTGGAAGGCATACCTCTAAGACGGCAAGAATCCATGAGGTTGCCATGA

mRNA sequence

TCACATTTGAGAAGCAAAGGGGGAAATTTGTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCCTTTCTGCCATTTCGATCCAATCCAAGCAACGCCCCCAGCTGTATCCAGTTTCTCTTCACCCAGCGGGGCCTCTCTTTATAAGCGCCGACATACCCATCAACCCTTTGATCTTTCGCTCCATTCATCTTCAAATCTTCCCTTTCGATTTACACCCATTTCTATTTCCGTTACTGGGTACCGACGCCCTTGAATCAGCGCTCGATGAACTAGCCACTGCTTGCTTCATCGCTTCTTCCTCAGCCATGGCGGCCGAGCCTCCCAGTTGGCACGAAGGCATCTCCTCGGACAATACCAAAGGCTTCATTCTTGCTCTTTCTTCCAGCTTCTTCATCGGTGGGAGCTTCATTGTCAAGAAGAAGGGCTTGAAGAAAGCCGGTGCGTCGGGAATCAGAGCAGGTTCGTTATCGGTTATGGGTGTTAAAGCTCTTGGAATTGCCATGAAGTTGACATTATCTGGAGTGAACCAGCTAGCCCTTGATACTTTTAACACTGCTGTTGTATCTCCCATATACTACGTGATGTTCACATCACTGACCATTTTGGCAAGTGTTATCATGTTTAAGGATTGGGATAGGCAGAGCCCAGCACAAGTCATCACAGAATTATGTGGCTTTGTGACTATTCTTTCAGGAACCTTTCTTCTTCACAAAACAAAAGACATGGTTGATGGTAACTTGTCTTACTCCGGTGTTCGGTTTCCAAATCCTACAGGTTTATCGACATCGTCGCCAATTCGACTTCCAAAGCACGTGGACGATGACAGATATAACGGCTTGGAAGGCATACCTCTAAGACGGCAAGAATCCATGAGGTTGCCATGA

Coding sequence (CDS)

ATGGCGGCCGAGCCTCCCAGTTGGCACGAAGGCATCTCCTCGGACAATACCAAAGGCTTCATTCTTGCTCTTTCTTCCAGCTTCTTCATCGGTGGGAGCTTCATTGTCAAGAAGAAGGGCTTGAAGAAAGCCGGTGCGTCGGGAATCAGAGCAGGTTCGTTATCGGTTATGGGTGTTAAAGCTCTTGGAATTGCCATGAAGTTGACATTATCTGGAGTGAACCAGCTAGCCCTTGATACTTTTAACACTGCTGTTGTATCTCCCATATACTACGTGATGTTCACATCACTGACCATTTTGGCAAGTGTTATCATGTTTAAGGATTGGGATAGGCAGAGCCCAGCACAAGTCATCACAGAATTATGTGGCTTTGTGACTATTCTTTCAGGAACCTTTCTTCTTCACAAAACAAAAGACATGGTTGATGGTAACTTGTCTTACTCCGGTGTTCGGTTTCCAAATCCTACAGGTTTATCGACATCGTCGCCAATTCGACTTCCAAAGCACGTGGACGATGACAGATATAACGGCTTGGAAGGCATACCTCTAAGACGGCAAGAATCCATGAGGTTGCCATGA

Homology

[Close]

BLAST of CmoCh18G006480 vs. Swiss-Prot
Match: NIPA4_ARATH (Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-41
Identity = 96/166 (57.83%), Postives = 112/166 (67.47%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG NQL                         ALDTFNTA+V
Sbjct: 197 GSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLNKALDTFNTAIV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQ+  Q++TE+CGFVTILSGTFLLH+TKDMV+G+  
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQNGTQIVTEICGFVTILSGTFLLHRTKDMVEGS-- 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                       S   P+R+ KH++++     EGIPLRRQES+R P
Sbjct: 317 ------------SVILPLRISKHINEE-----EGIPLRRQESLRSP 343

[Close]

BLAST of CmoCh18G006480 vs. Swiss-Prot
Match: NIPA3_ARATH (Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.0e-40
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG+NQL                         ALDTFNTAVV
Sbjct: 197 GSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLNKALDTFNTAVV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQ   Q++TELCGFVTILSGTFLLHKTKDMVDG+ S
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQDGTQIVTELCGFVTILSGTFLLHKTKDMVDGSSS 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIP--LRRQESMRLP 193
              +             +RLPK ++D      EGIP  LRR E  + P
Sbjct: 317 LGNL------------ALRLPKQLEDSNGFEQEGIPLTLRRHECTKSP 352

[Close]

BLAST of CmoCh18G006480 vs. Swiss-Prot
Match: NIPA5_ARATH (Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.4e-38
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG NQL                         ALDTFNTAVV
Sbjct: 197 GSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLNKALDTFNTAVV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQS  Q++TELCGFVTILSGTFLLH T DMVDG  S
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQSGTQIMTELCGFVTILSGTFLLHTTTDMVDGE-S 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGI--PLRRQESMRLP 193
              +     + L     +R+PKH +D      +GI   LRRQES + P
Sbjct: 317 KGNLSSEEDSHLL----LRIPKHSEDSNGFVQDGIILSLRRQESAKSP 359

[Close]

BLAST of CmoCh18G006480 vs. Swiss-Prot
Match: NIPA2_ARATH (Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-28
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKA+ IA+KLT SG+NQ                          ALD FNTAV+
Sbjct: 186 GSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLNKALDNFNTAVI 245

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDM 141
           SP+YYVMFT+ TILAS+IMFKDW  QS  Q+ TELCGFVTILSGTFLLHKTKDM
Sbjct: 246 SPVYYVMFTTFTILASMIMFKDWASQSGLQIATELCGFVTILSGTFLLHKTKDM 299

[Close]

BLAST of CmoCh18G006480 vs. Swiss-Prot
Match: NIPA1_ARATH (Probable magnesium transporter NIPA1 OS=Arabidopsis thaliana GN=At3g23870 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-28
Identity = 69/127 (54.33%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKA+ IA+KLT SG NQ                          ALDTFNTAV+
Sbjct: 186 GSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNKALDTFNTAVI 245

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 154
           SP+YYVMFT+ TI+AS+IMFKDW  QS  ++ TELCGFVTILSGTFLLHKTKDM +    
Sbjct: 246 SPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCGFVTILSGTFLLHKTKDMGNSASG 305

[Close]

BLAST of CmoCh18G006480 vs. TrEMBL
Match: I3T7G8_LOTJA (Probable magnesium transporter OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.9e-45
Identity = 106/166 (63.86%), Postives = 118/166 (71.08%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 196 GSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFTLVVTVCVLTQMNYLNKALDTFNTAVV 255

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+LTI+ASVIMFKDWDRQSP QVITE+CGFVTILSGTFLLH+TKDM DG+  
Sbjct: 256 SPIYYVMFTTLTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHRTKDMTDGH-- 315

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL +SS IRLPKH ++D + G EGIPLRRQE+ R P
Sbjct: 316 ----------GLQSSSSIRLPKHSEEDGFGGGEGIPLRRQETSRSP 349

[Close]

BLAST of CmoCh18G006480 vs. TrEMBL
Match: A0A0B2S5V1_GLYSO (Probable magnesium transporter OS=Glycine soja GN=glysoja_020742 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.5e-45
Identity = 106/166 (63.86%), Postives = 116/166 (69.88%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKALGI +KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 149 GSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVLVCVLTQMNYLNKALDTFNTAVV 208

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+ TI+ASVIMFKDWDRQSP QVITE+CGFVTILSGTFLLHKTKDM D    
Sbjct: 209 SPIYYVMFTTFTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHKTKDMAD---- 268

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL TS  IRLPKH ++D ++G EGIPLRRQESMRLP
Sbjct: 269 ----------GLQTSLSIRLPKHSEEDGFDGGEGIPLRRQESMRLP 300

[Close]

BLAST of CmoCh18G006480 vs. TrEMBL
Match: I1MJW5_SOYBN (Probable magnesium transporter OS=Glycine max GN=GLYMA_16G003900 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.5e-45
Identity = 106/166 (63.86%), Postives = 116/166 (69.88%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKALGI +KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 196 GSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVLVCVLTQMNYLNKALDTFNTAVV 255

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+ TI+ASVIMFKDWDRQSP QVITE+CGFVTILSGTFLLHKTKDM D    
Sbjct: 256 SPIYYVMFTTFTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHKTKDMAD---- 315

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL TS  IRLPKH ++D ++G EGIPLRRQESMRLP
Sbjct: 316 ----------GLQTSLSIRLPKHSEEDGFDGGEGIPLRRQESMRLP 347

[Close]

BLAST of CmoCh18G006480 vs. TrEMBL
Match: I3S1P9_LOTJA (Probable magnesium transporter OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.4e-45
Identity = 105/166 (63.25%), Postives = 118/166 (71.08%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 196 GSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFTLVVTVCVLTQMNYLNKALDTFNTAVV 255

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+LTI+ASVIMFKDWDRQSP QVITE+CGFV ILSGTFLLH+TKDM DG+  
Sbjct: 256 SPIYYVMFTTLTIVASVIMFKDWDRQSPTQVITEICGFVAILSGTFLLHRTKDMTDGH-- 315

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL +SS IRLPKH ++D ++G EGIPLRRQE+ R P
Sbjct: 316 ----------GLQSSSSIRLPKHSEEDGFDGGEGIPLRRQETSRSP 349

[Close]

BLAST of CmoCh18G006480 vs. TrEMBL
Match: B9SSN6_RICCO (Probable magnesium transporter OS=Ricinus communis GN=RCOM_1374720 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-44
Identity = 105/164 (64.02%), Postives = 116/164 (70.73%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 195 GSLSVMSVKALGIALKLTLSGMNQLIYPQTWAFALVVITCVVTQMNYLNKALDTFNTAVV 254

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTI+ASVIMFKDWDRQSP Q++TE+CGFVTILSGTFLLHKTKDMVDG   
Sbjct: 255 SPIYYVMFTSLTIVASVIMFKDWDRQSPTQIVTEMCGFVTILSGTFLLHKTKDMVDG--- 314

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMR 191
                        TS P+RLPKH ++D + G EGIPLRRQES+R
Sbjct: 315 ------------PTSLPVRLPKHTEEDSF-GAEGIPLRRQESLR 342

[Close]

BLAST of CmoCh18G006480 vs. TAIR10
Match: AT1G71900.1 (AT1G71900.1 Protein of unknown function (DUF803))

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-42
Identity = 96/166 (57.83%), Postives = 112/166 (67.47%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG NQL                         ALDTFNTA+V
Sbjct: 197 GSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLNKALDTFNTAIV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQ+  Q++TE+CGFVTILSGTFLLH+TKDMV+G+  
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQNGTQIVTEICGFVTILSGTFLLHRTKDMVEGS-- 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                       S   P+R+ KH++++     EGIPLRRQES+R P
Sbjct: 317 ------------SVILPLRISKHINEE-----EGIPLRRQESLRSP 343

[Close]

BLAST of CmoCh18G006480 vs. TAIR10
Match: AT1G34470.1 (AT1G34470.1 Protein of unknown function (DUF803))

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-41
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG+NQL                         ALDTFNTAVV
Sbjct: 197 GSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLNKALDTFNTAVV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQ   Q++TELCGFVTILSGTFLLHKTKDMVDG+ S
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQDGTQIVTELCGFVTILSGTFLLHKTKDMVDGSSS 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIP--LRRQESMRLP 193
              +             +RLPK ++D      EGIP  LRR E  + P
Sbjct: 317 LGNL------------ALRLPKQLEDSNGFEQEGIPLTLRRHECTKSP 352

[Close]

BLAST of CmoCh18G006480 vs. TAIR10
Match: AT4G09640.1 (AT4G09640.1 Protein of unknown function (DUF803))

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-39
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLT SG NQL                         ALDTFNTAVV
Sbjct: 197 GSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLNKALDTFNTAVV 256

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQS  Q++TELCGFVTILSGTFLLH T DMVDG  S
Sbjct: 257 SPIYYVMFTSLTILASVIMFKDWDRQSGTQIMTELCGFVTILSGTFLLHTTTDMVDGE-S 316

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGI--PLRRQESMRLP 193
              +     + L     +R+PKH +D      +GI   LRRQES + P
Sbjct: 317 KGNLSSEEDSHLL----LRIPKHSEDSNGFVQDGIILSLRRQESAKSP 359

[Close]

BLAST of CmoCh18G006480 vs. TAIR10
Match: AT4G13800.1 (AT4G13800.1 Protein of unknown function (DUF803))

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-29
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKA+ IA+KLT SG+NQ                          ALD FNTAV+
Sbjct: 186 GSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLNKALDNFNTAVI 245

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDM 141
           SP+YYVMFT+ TILAS+IMFKDW  QS  Q+ TELCGFVTILSGTFLLHKTKDM
Sbjct: 246 SPVYYVMFTTFTILASMIMFKDWASQSGLQIATELCGFVTILSGTFLLHKTKDM 299

[Close]

BLAST of CmoCh18G006480 vs. TAIR10
Match: AT3G23870.1 (AT3G23870.1 Protein of unknown function (DUF803))

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-29
Identity = 69/127 (54.33%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKA+ IA+KLT SG NQ                          ALDTFNTAV+
Sbjct: 186 GSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNKALDTFNTAVI 245

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 154
           SP+YYVMFT+ TI+AS+IMFKDW  QS  ++ TELCGFVTILSGTFLLHKTKDM +    
Sbjct: 246 SPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCGFVTILSGTFLLHKTKDMGNSASG 305

[Close]

BLAST of CmoCh18G006480 vs. NCBI nr
Match: gi|449435130|ref|XP_004135348.1| (PREDICTED: probable magnesium transporter NIPA4 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.3e-51
Identity = 117/166 (70.48%), Postives = 124/166 (74.70%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVMGVKALGIAMKLT+SGVNQ                          ALDTFNTAVV
Sbjct: 194 GSLSVMGVKALGIAMKLTISGVNQFVYPQTWLFAIIVTTFLLTQMNYLNKALDTFNTAVV 253

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQSP+QVITELCGFVTILSGTFLLHKTKDMVD    
Sbjct: 254 SPIYYVMFTSLTILASVIMFKDWDRQSPSQVITELCGFVTILSGTFLLHKTKDMVD---- 313

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     G+STSSPIRL KH+++D YNGLEGIPLRRQE+MRLP
Sbjct: 314 ----------GVSTSSPIRLTKHMEEDEYNGLEGIPLRRQEAMRLP 345

[Close]

BLAST of CmoCh18G006480 vs. NCBI nr
Match: gi|659090375|ref|XP_008445982.1| (PREDICTED: magnesium transporter NIPA2-like [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 5.1e-51
Identity = 117/166 (70.48%), Postives = 123/166 (74.10%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVMGVKALGIAMKLTLSGVNQ                          ALDTFNTAVV
Sbjct: 194 GSLSVMGVKALGIAMKLTLSGVNQFVYPQTWLFAIIVTTFLLTQMNYLNKALDTFNTAVV 253

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQSP+QVITELCGFVTILSGTFLLHKTKDMVD    
Sbjct: 254 SPIYYVMFTSLTILASVIMFKDWDRQSPSQVITELCGFVTILSGTFLLHKTKDMVD---- 313

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     G+STSSPIRL KH+++D YNGLEGIPLRRQE+ RLP
Sbjct: 314 ----------GISTSSPIRLTKHMEEDEYNGLEGIPLRRQEATRLP 345

[Close]

BLAST of CmoCh18G006480 vs. NCBI nr
Match: gi|1009118444|ref|XP_015875865.1| (PREDICTED: probable magnesium transporter NIPA4 [Ziziphus jujuba])

HSP 1 Score: 193.4 bits (490), Expect = 3.8e-46
Identity = 108/166 (65.06%), Postives = 117/166 (70.48%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 200 GSLSVMSVKALGIALKLTLSGMNQLIYPQTWAFTIVVITCVLTQMNYLNKALDTFNTAVV 259

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFTSLTILASVIMFKDWDRQSP QV+TE+CGFVTILSGTFLLHKTKDM DG+  
Sbjct: 260 SPIYYVMFTSLTILASVIMFKDWDRQSPTQVVTEMCGFVTILSGTFLLHKTKDMADGS-- 319

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                       +TS PIRLPKH + D + G EGIPLRRQES+R P
Sbjct: 320 ------------TTSLPIRLPKHTEGDGFIGAEGIPLRRQESLRSP 351

[Close]

BLAST of CmoCh18G006480 vs. NCBI nr
Match: gi|388520797|gb|AFK48460.1| (unknown [Lotus japonicus])

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 106/166 (63.86%), Postives = 118/166 (71.08%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSLSVM VKALGIA+KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 196 GSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFTLVVTVCVLTQMNYLNKALDTFNTAVV 255

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+LTI+ASVIMFKDWDRQSP QVITE+CGFVTILSGTFLLH+TKDM DG+  
Sbjct: 256 SPIYYVMFTTLTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHRTKDMTDGH-- 315

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL +SS IRLPKH ++D + G EGIPLRRQE+ R P
Sbjct: 316 ----------GLQSSSSIRLPKHSEEDGFGGGEGIPLRRQETSRSP 349

[Close]

BLAST of CmoCh18G006480 vs. NCBI nr
Match: gi|734418510|gb|KHN39664.1| (Magnesium transporter NIPA2 [Glycine soja])

HSP 1 Score: 188.7 bits (478), Expect = 9.3e-45
Identity = 106/166 (63.86%), Postives = 116/166 (69.88%), Query Frame = 1


Query: 52  GSLSVMGVKALGIAMKLTLSGVNQL-------------------------ALDTFNTAVV 111
           GSL+VM VKALGI +KLTLSG+NQL                         ALDTFNTAVV
Sbjct: 149 GSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVLVCVLTQMNYLNKALDTFNTAVV 208

Query: 112 SPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGNLS 171
           SPIYYVMFT+ TI+ASVIMFKDWDRQSP QVITE+CGFVTILSGTFLLHKTKDM D    
Sbjct: 209 SPIYYVMFTTFTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHKTKDMAD---- 268

Query: 172 YSGVRFPNPTGLSTSSPIRLPKHVDDDRYNGLEGIPLRRQESMRLP 193
                     GL TS  IRLPKH ++D ++G EGIPLRRQESMRLP
Sbjct: 269 ----------GLQTSLSIRLPKHSEEDGFDGGEGIPLRRQESMRLP 300

The following BLAST results are available for this feature:

BLAST of CmoCh18G006480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIPA4_ARATH	2.8e-41	57.83	Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 S...	[more]
NIPA3_ARATH	9.0e-40	58.33	Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 S...	[more]
NIPA5_ARATH	8.4e-38	58.33	Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 S...	[more]
NIPA2_ARATH	6.0e-28	60.53	Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 S...	[more]
NIPA1_ARATH	6.0e-28	54.33	Probable magnesium transporter NIPA1 OS=Arabidopsis thaliana GN=At3g23870 PE=2 S...	[more]

BLAST of CmoCh18G006480 vs. TrEMBL


Match Name	E-value	Identity	Description
I3T7G8_LOTJA	2.9e-45	63.86	Probable magnesium transporter OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2S5V1_GLYSO	6.5e-45	63.86	Probable magnesium transporter OS=Glycine soja GN=glysoja_020742 PE=3 SV=1	[more]
I1MJW5_SOYBN	6.5e-45	63.86	Probable magnesium transporter OS=Glycine max GN=GLYMA_16G003900 PE=3 SV=1	[more]
I3S1P9_LOTJA	8.4e-45	63.25	Probable magnesium transporter OS=Lotus japonicus PE=2 SV=1	[more]
B9SSN6_RICCO	1.9e-44	64.02	Probable magnesium transporter OS=Ricinus communis GN=RCOM_1374720 PE=3 SV=1	[more]

BLAST of CmoCh18G006480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71900.1	1.6e-42	57.83	Protein of unknown function (DUF803)	[more]
AT1G34470.1	5.1e-41	58.33	Protein of unknown function (DUF803)	[more]
AT4G09640.1	4.7e-39	58.33	Protein of unknown function (DUF803)	[more]
AT4G13800.1	3.4e-29	60.53	Protein of unknown function (DUF803)	[more]
AT3G23870.1	3.4e-29	54.33	Protein of unknown function (DUF803)	[more]

BLAST of CmoCh18G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435130\|ref\|XP_004135348.1\|	2.3e-51	70.48	PREDICTED: probable magnesium transporter NIPA4 [Cucumis sativus]	[more]
gi\|659090375\|ref\|XP_008445982.1\|	5.1e-51	70.48	PREDICTED: magnesium transporter NIPA2-like [Cucumis melo]	[more]
gi\|1009118444\|ref\|XP_015875865.1\|	3.8e-46	65.06	PREDICTED: probable magnesium transporter NIPA4 [Ziziphus jujuba]	[more]
gi\|388520797\|gb\|AFK48460.1\|	4.2e-45	63.86	unknown [Lotus japonicus]	[more]
gi\|734418510\|gb\|KHN39664.1\|	9.3e-45	63.86	Magnesium transporter NIPA2 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008521	Mg_trans_NIPA

Vocabulary: **Molecular Function**
Term	Definition
GO:0015095	magnesium ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015693	magnesium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015693	magnesium ion transport
biological_process	GO:1903830	magnesium ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005769	early endosome
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015095	magnesium ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G006480.1	CmoCh18G006480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008521	Magnesium transporter NIPA	PANTHER	PTHR12570	UNCHARACTERIZED	coord: 52..145 score: 5.1E-70coord: 163..191 score: 5.1
IPR008521	Magnesium transporter NIPA	PFAM	PF05653	Mg_trans_NIPA	coord: 77..140 score: 1.5E-25coord: 15..52 score: 5.
None	No IPR available	PANTHER	PTHR12570:SF22	SUBFAMILY NOT NAMED	coord: 52..145 score: 5.1E-70coord: 163..191 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G006480	Lsi04G007110	Bottle gourd (USVL1VR-Ls)	cmolsiB365
CmoCh18G006480	Cp4.1LG09g05720	Cucurbita pepo (Zucchini)	cmocpeB374
CmoCh18G006480	Cp4.1LG01g16430	Cucurbita pepo (Zucchini)	cmocpeB393
CmoCh18G006480	MELO3C011827.2	Melon (DHL92) v3.6.1	cmomedB396
CmoCh18G006480	CsaV3_5G029850	Cucumber (Chinese Long) v3	cmocucB0488
CmoCh18G006480	Cla97C11G219270	Watermelon (97103) v2	cmowmbB391
CmoCh18G006480	CsGy5G020600	Cucumber (Gy14) v2	cgybcmoB604
CmoCh18G006480	Carg21208	Silver-seed gourd	carcmoB0944
CmoCh18G006480	Carg24418	Silver-seed gourd	carcmoB0186

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G006480	CmoCh04G019550	Cucurbita moschata (Rifu)	cmocmoB337

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G006480	Cucumber (Gy14) v1	cgycmoB0120
CmoCh18G006480	Cucurbita maxima (Rimu)	cmacmoB410
CmoCh18G006480	Cucurbita maxima (Rimu)	cmacmoB707
CmoCh18G006480	Wild cucumber (PI 183967)	cmocpiB412
CmoCh18G006480	Cucumber (Chinese Long) v2	cmocuB407
CmoCh18G006480	Melon (DHL92) v3.5.1	cmomeB345
CmoCh18G006480	Watermelon (Charleston Gray)	cmowcgB336
CmoCh18G006480	Watermelon (97103) v1	cmowmB393