CmoCh18G006150 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G006150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L2
LocationCmo_Chr18 : 7482513 .. 7482937 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCATACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTTCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATTGGCCACATTAAAATTATCTTCTGGGGGGTCCGTTTGATATCAAAAAATTGCTCAACAATAGTCAGACAATTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGACTAGGTAAGCGTCCTATACTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGTCCCAATTGGTAGAAAAAAACCTGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCATAGTAAATAA

mRNA sequence

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCATACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTAAGCGTCCTATACTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGTCCCAATTGGTAGAAAAAAACCTGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCATAGTAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCATACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTAAGCGTCCTATACTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGTCCCAATTGGTAGAAAAAAACCTGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCATAGTAAATAA
Homology
[Close]
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 78/142 (54.93%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 78/142 (54.93%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 196 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

[Close]
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 78/142 (54.93%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 78/142 (54.93%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-31
Identity = 77/142 (54.23%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LG+GGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. TrEMBL
Match: G7JH62_MEDTR (50S ribosomal protein L2 OS=Medicago truncatula GN=MTR_4g051430 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-31
Identity = 76/122 (62.30%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 261 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNSGAKRWL 320

Query: 61  -KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRH 86
            KRP++RGVVMNPVDHPHGGGEGR PIGRKKP+TPWGY ALG RSRK+NKYSDN ILRR 
Sbjct: 321 GKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRSRKKNKYSDNLILRRR 380

[Close]
BLAST of CmoCh18G006150 vs. TrEMBL
Match: A0A0S2IE39_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.6e-30
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

[Close]
BLAST of CmoCh18G006150 vs. TrEMBL
Match: A0A0S2IEF6_9ROSI (Ribosomal protein L2 OS=Cucurbita cordata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.6e-30
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

[Close]
BLAST of CmoCh18G006150 vs. TrEMBL
Match: A0A0S2IF81_9ROSI (Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.6e-30
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

[Close]
BLAST of CmoCh18G006150 vs. TrEMBL
Match: A0A0S2IGF8_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo subsp. fraterna GN=rpl2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.6e-30
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

[Close]
BLAST of CmoCh18G006150 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-29
Identity = 72/142 (50.70%), Postives = 77/142 (54.23%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LG+GGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY A
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-29
Identity = 72/142 (50.70%), Postives = 77/142 (54.23%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LG+GGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY A
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

[Close]
BLAST of CmoCh18G006150 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 50.1 bits (118), Expect = 8.0e-07
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 1 

Query: 14  LGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPAT---PWG 62
           L K GQ +R  G RP +RGV MNP DHPHGGGEG+      +  T   PWG
Sbjct: 139 LYKAGQ-SRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWG 188

[Close]
BLAST of CmoCh18G006150 vs. NCBI nr
Match: gi|357471553|ref|XP_003606061.1| (50S ribosomal protein L2 [Medicago truncatula])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 76/122 (62.30%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 261 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNSGAKRWL 320

Query: 61  -KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRH 86
            KRP++RGVVMNPVDHPHGGGEGR PIGRKKP+TPWGY ALG RSRK+NKYSDN ILRR 
Sbjct: 321 GKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRSRKKNKYSDNLILRRR 380

[Close]
BLAST of CmoCh18G006150 vs. NCBI nr
Match: gi|952954360|gb|ALO21724.1| (ribosomal protein L2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

[Close]
BLAST of CmoCh18G006150 vs. NCBI nr
Match: gi|788229612|ref|YP_009123784.1| (ribosomal protein L2 [Lithocarpus balansae])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 145 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 204

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 205 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 264

[Close]
BLAST of CmoCh18G006150 vs. NCBI nr
Match: gi|408902749|gb|AFU96017.1| (Rpl2, partial (chloroplast) [Balanops pachyphylla])

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 79/142 (55.63%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGRVPIGRKKPATPWGY A
Sbjct: 199 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYPA 258

[Close]
BLAST of CmoCh18G006150 vs. NCBI nr
Match: gi|340806857|gb|AEK71496.1| (ribosomal protein L2 [Krameria lanceolata])

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 78/142 (54.93%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLGTAIHNIEIILGKGGQLARAAG----------------------------------- 60
           MPLGTAIHNIEI LGKGGQLARAAG                                   
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  ---------------------KRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA 86
                                KRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

The following BLAST results are available for this feature:
BLAST of CmoCh18G006150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2_MORIN3.4e-3154.9350S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1[more]
RK2_MANES3.4e-3154.9350S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1[more]
RK2_CUCSA3.4e-3154.9350S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1[more]
RK2_CARPA3.4e-3154.9350S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1[more]
RK2B_POPAL7.5e-3154.2350S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1[more]
BLAST of CmoCh18G006150 vs. TrEMBL
Match NameE-valueIdentityDescription
G7JH62_MEDTR8.9e-3162.3050S ribosomal protein L2 OS=Medicago truncatula GN=MTR_4g051430 PE=3 SV=1[more]
A0A0S2IE39_9ROSI7.6e-3055.63Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1[more]
A0A0S2IEF6_9ROSI7.6e-3055.63Ribosomal protein L2 OS=Cucurbita cordata GN=rpl2 PE=3 SV=1[more]
A0A0S2IF81_9ROSI7.6e-3055.63Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1[more]
A0A0S2IGF8_CUCPE7.6e-3055.63Ribosomal protein L2 OS=Cucurbita pepo subsp. fraterna GN=rpl2 PE=3 SV=1[more]
BLAST of CmoCh18G006150 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.12.0e-2950.70ATCG00830.1 ribosomal protein L2[more]
ATCG01310.12.0e-2950.70ATCG01310.1 ribosomal protein L2[more]
AT2G44065.18.0e-0752.94 Ribosomal protein L2 family[more]
BLAST of CmoCh18G006150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|357471553|ref|XP_003606061.1|1.3e-3062.3050S ribosomal protein L2 [Medicago truncatula][more]
gi|952954360|gb|ALO21724.1|1.1e-2955.63ribosomal protein L2 (plastid) [Cucurbita argyrosperma][more]
gi|788229612|ref|YP_009123784.1|1.1e-2955.63ribosomal protein L2 [Lithocarpus balansae][more]
gi|408902749|gb|AFU96017.1|1.9e-2955.63Rpl2, partial (chloroplast) [Balanops pachyphylla][more]
gi|340806857|gb|AEK71496.1|1.9e-2954.93ribosomal protein L2 [Krameria lanceolata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR008991Translation_prot_SH3-like_sf
IPR014726Ribosomal_L2_dom3
IPR022669Ribosomal_L2_C
IPR022671Ribosomal_L2_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006150.1CmoCh18G006150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 14..85
score: 9.5
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 1..82
score: 9.03
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 10..83
score: 2.0
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 25..61
score: 1.6
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 1..63
score: 2.
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 28..39
scor
NoneNo IPR availablePANTHERPTHR13691:SF21SUBFAMILY NOT NAMEDcoord: 14..85
score: 9.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G006150Cucurbita pepo (Zucchini)cmocpeB407
CmoCh18G006150Bottle gourd (USVL1VR-Ls)cmolsiB357
CmoCh18G006150Cucumber (Gy14) v2cgybcmoB096
CmoCh18G006150Cucumber (Chinese Long) v3cmocucB0472
CmoCh18G006150Watermelon (97103) v2cmowmbB380
CmoCh18G006150Wax gourdcmowgoB0534
CmoCh18G006150Cucurbita moschata (Rifu)cmocmoB167
CmoCh18G006150Cucumber (Gy14) v1cgycmoB0881
CmoCh18G006150Cucurbita maxima (Rimu)cmacmoB220
CmoCh18G006150Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G006150Wild cucumber (PI 183967)cmocpiB395
CmoCh18G006150Cucumber (Chinese Long) v2cmocuB392
CmoCh18G006150Watermelon (Charleston Gray)cmowcgB342
CmoCh18G006150Watermelon (97103) v1cmowmB378