CmoCh18G006020 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G006020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP synthase subunit beta, chloroplastic
Location	Cmo_Chr18 : 6651064 .. 6651452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAACGTCAACTATGCTACAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACGGGTTCCCTGGGGAAATACGTTGGGCTAGCAGAAACAATTAGAGGGTTTAAATTAATCCTTTCCGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAAGTGAACAAA

mRNA sequence

ATTCAACGTCAACTATGCTACAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACGGGTTCCCTGGGGAAATACGTTGGGCTAGCAGAAACAATTAGAGGGTTTAAATTAATCCTTTCCGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAAGTGAACAAA

Coding sequence (CDS)

ATGCTACAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACGGGTTCCCTGGGGAAATACGTTGGGCTAGCAGAAACAATTAGAGGGTTTAAATTAATCCTTTCCGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAAGTGAACAAA

Homology

[Close]

BLAST of CmoCh18G006020 vs. Swiss-Prot
Match: ATPB_GOSHI (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum GN=atpB PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-61
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

[Close]

BLAST of CmoCh18G006020 vs. Swiss-Prot
Match: ATPB_EUCGG (ATP synthase subunit beta, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpB PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-61
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

[Close]

BLAST of CmoCh18G006020 vs. Swiss-Prot
Match: ATPB_GOSBA (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense GN=atpB PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-61
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRY ELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYNELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

[Close]

BLAST of CmoCh18G006020 vs. Swiss-Prot
Match: ATPB_CUCSA (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus GN=atpB PE=3 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-61
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           S + K
Sbjct: 494 SNLKK 498

[Close]

BLAST of CmoCh18G006020 vs. Swiss-Prot
Match: ATPB_CARPA (ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.0e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKAT LEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATQLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

[Close]

BLAST of CmoCh18G006020 vs. TrEMBL
Match: A0A0S2IFL1_9ROSI (ATP synthase subunit beta OS=Cucurbita okeechobeensis GN=atpB PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. TrEMBL
Match: A0A0S2IGP7_CUCMO (ATP synthase subunit beta OS=Cucurbita moschata GN=atpB PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. TrEMBL
Match: A0A0S2IDQ9_9ROSI (ATP synthase subunit beta OS=Cucurbita argyrosperma GN=atpB PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. TrEMBL
Match: A0A0S2IE24_9ROSI (ATP synthase subunit beta OS=Cucurbita argyrosperma var. palmeri GN=atpB PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. TrEMBL
Match: A0A0S2IEY8_9ROSI (ATP synthase subunit beta OS=Cucurbita argyrosperma subsp. sororia GN=atpB PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. TAIR10
Match: ATCG00480.1 (ATCG00480.1 ATP synthase subunit beta)

HSP 1 Score: 228.8 bits (582), Expect = 1.9e-60
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQ+VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQQVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGF LILSGE D LPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFNLILSGEFDSLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

[Close]

BLAST of CmoCh18G006020 vs. TAIR10
Match: AT5G08670.1 (AT5G08670.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-39
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           ML P I+GEEHY TA+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQ
Sbjct: 434 MLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQ 493

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PF VAE+FTG+ GKYV L E I  F+ +L G+ D L EQ+FY+VG IDE  AKA  +  E
Sbjct: 494 PFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKE 553

Query: 121 S 122
           S
Sbjct: 554 S 554

[Close]

BLAST of CmoCh18G006020 vs. TAIR10
Match: AT5G08680.1 (AT5G08680.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-39
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           ML P I+GEEHY TA+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQ
Sbjct: 437 MLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQ 496

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PF VAE+FTG+ GKYV L E I  F+ +L G+ D L EQ+FY+VG IDE  AKA  +  E
Sbjct: 497 PFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKE 556

Query: 121 S 122
           S
Sbjct: 557 S 557

[Close]

BLAST of CmoCh18G006020 vs. TAIR10
Match: AT5G08690.1 (AT5G08690.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-39
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           ML P I+GEEHY TA+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQ
Sbjct: 434 MLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQ 493

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PF VAE+FTG+ GKYV L E I  F+ +L G+ D L EQ+FY+VG IDE  AKA  +  E
Sbjct: 494 PFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKE 553

Query: 121 S 122
           S
Sbjct: 554 S 554

[Close]

BLAST of CmoCh18G006020 vs. NCBI nr
Match: gi|952954366|gb|ALO21730.1| (AtpB (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKVNK
Sbjct: 494 SKVNK 498

[Close]

BLAST of CmoCh18G006020 vs. NCBI nr
Match: gi|952954713|gb|ALO22072.1| (AtpB (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKV K
Sbjct: 494 SKVKK 498

[Close]

BLAST of CmoCh18G006020 vs. NCBI nr
Match: gi|952955214|gb|ALO22565.1| (AtpB (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKV K
Sbjct: 494 SKVKK 498

[Close]

BLAST of CmoCh18G006020 vs. NCBI nr
Match: gi|952954765|gb|ALO22123.1| (AtpB (plastid) [Cucurbita ficifolia])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SKV K
Sbjct: 494 SKVKK 498

[Close]

BLAST of CmoCh18G006020 vs. NCBI nr
Match: gi|910355099|ref|YP_009161273.1| (AtpB (chloroplast) [Wisteria floribunda])

HSP 1 Score: 236.1 bits (601), Expect = 3.3e-59
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 60
           MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ
Sbjct: 374 MLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433

Query: 61  PFFVAEVFTGSLGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 120
           PFFVAEVFTGS GKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEME 493

Query: 121 SKVNK 126
           SK+ K
Sbjct: 494 SKLKK 498

The following BLAST results are available for this feature:

BLAST of CmoCh18G006020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPB_GOSHI	2.1e-61	97.60	ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum GN=atpB PE=3 SV=1	[more]
ATPB_EUCGG	2.1e-61	97.60	ATP synthase subunit beta, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
ATPB_GOSBA	7.8e-61	96.80	ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense GN=atpB PE=3 SV...	[more]
ATPB_CUCSA	7.8e-61	96.80	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus GN=atpB PE=3 SV=2	[more]
ATPB_CARPA	1.0e-60	96.80	ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1	[more]

BLAST of CmoCh18G006020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IFL1_9ROSI	2.1e-60	99.20	ATP synthase subunit beta OS=Cucurbita okeechobeensis GN=atpB PE=3 SV=1	[more]
A0A0S2IGP7_CUCMO	2.1e-60	99.20	ATP synthase subunit beta OS=Cucurbita moschata GN=atpB PE=3 SV=1	[more]
A0A0S2IDQ9_9ROSI	2.1e-60	99.20	ATP synthase subunit beta OS=Cucurbita argyrosperma GN=atpB PE=3 SV=1	[more]
A0A0S2IE24_9ROSI	2.1e-60	99.20	ATP synthase subunit beta OS=Cucurbita argyrosperma var. palmeri GN=atpB PE=3 SV...	[more]
A0A0S2IEY8_9ROSI	2.1e-60	99.20	ATP synthase subunit beta OS=Cucurbita argyrosperma subsp. sororia GN=atpB PE=3 ...	[more]

BLAST of CmoCh18G006020 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00480.1	1.9e-60	94.40	ATCG00480.1 ATP synthase subunit beta	[more]
AT5G08670.1	1.8e-39	65.29	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	1.8e-39	65.29	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	1.8e-39	65.29	ATP synthase alpha/beta family protein	[more]

BLAST of CmoCh18G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954366\|gb\|ALO21730.1\|	3.0e-60	99.20	AtpB (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954713\|gb\|ALO22072.1\|	1.5e-59	98.40	AtpB (plastid) [Cucurbita ecuadorensis]	[more]
gi\|952955214\|gb\|ALO22565.1\|	1.5e-59	98.40	AtpB (plastid) [Cucurbita pepo subsp. fraterna]	[more]
gi\|952954765\|gb\|ALO22123.1\|	1.5e-59	98.40	AtpB (plastid) [Cucurbita ficifolia]	[more]
gi\|910355099\|ref\|YP_009161273.1\|	3.3e-59	97.60	AtpB (chloroplast) [Wisteria floribunda]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000793	ATP_synth_asu_C
IPR024034	ATPase_F1/V1_b/a_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

Vocabulary: **Cellular Component**
Term	Definition
GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain

Vocabulary: **Biological Process**
Term	Definition
GO:0015991	ATP hydrolysis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G006020.1	CmoCh18G006020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000793	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	unknown	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 2..117 score: 9.42
IPR024034	ATPase, F1 complex beta subunit/V1 complex, C-terminal	GENE3D	G3DSA:1.10.1140.10		coord: 2..121 score: 3.5
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..122 score: 3.3
None	No IPR available	PANTHER	PTHR15184:SF43	ATP SYNTHASE SUBUNIT BETA, CHLOROPLASTIC	coord: 1..122 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G006020	Watermelon (97103) v2	cmowmbB380
CmoCh18G006020	Watermelon (97103) v2	cmowmbB384
CmoCh18G006020	Cucurbita moschata (Rifu)	cmocmoB168
CmoCh18G006020	Cucurbita maxima (Rimu)	cmacmoB222
CmoCh18G006020	Cucurbita maxima (Rimu)	cmacmoB407
CmoCh18G006020	Cucurbita maxima (Rimu)	cmacmoB411
CmoCh18G006020	Watermelon (Charleston Gray)	cmowcgB342
CmoCh18G006020	Watermelon (97103) v1	cmowmB378
CmoCh18G006020	Cucurbita pepo (Zucchini)	cmocpeB375
CmoCh18G006020	Cucurbita pepo (Zucchini)	cmocpeB403
CmoCh18G006020	Bottle gourd (USVL1VR-Ls)	cmolsiB357
CmoCh18G006020	Bottle gourd (USVL1VR-Ls)	cmolsiB359
CmoCh18G006020	Cucumber (Gy14) v2	cgybcmoB084