CmoCh18G005670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G005670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr18 : 4715803 .. 4716429 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA

mRNA sequence

ATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA

Coding sequence (CDS)

ATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA
Homology
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BLAST of CmoCh18G005670 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-44
Identity = 92/209 (44.02%), Postives = 137/209 (65.55%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGL NAPATF   +N +    L++  +VYLDDI+V+ST+L+EH   L LVF+KL +  
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L ++ +KC F +    FLGHV+    I  + +KI+AIQ++ +PT   E+++FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSN-DCQMAFENMKTTMTRGSVLGLVDVTKPFEVET 180
           +F+  F+  A P+T+ LKK+     +N +   AF+ +K  ++   +L + D TK F + T
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 NASDFALGGVLIQEGHPIAYESRKLNDAE 209
           +ASD ALG VL Q+GHP++Y SR LN+ E
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHE 542

[Close]
BLAST of CmoCh18G005670 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-41
Identity = 91/209 (43.54%), Postives = 127/209 (60.77%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGL NAPATF   +N +    L++  +VYLDDI+++ST+L EH   ++LVF KL    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L ++ +KC F +   NFLGH+V    I  +  K+KAI  + +PT   E+R+FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSN-DCQMAFENMKTTMTRGSVLGLVDVTKPFEVET 180
           +F+  ++  A P+T  LKK         +   AFE +K  + R  +L L D  K F + T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 NASDFALGGVLIQEGHPIAYESRKLNDAE 209
           +AS+ ALG VL Q GHPI++ SR LND E
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHE 541

[Close]
BLAST of CmoCh18G005670 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.0e-36
Identity = 83/223 (37.22%), Postives = 125/223 (56.05%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           +PFGL NAPA F  +I+ +  E++ +   VY+DDI+V+S   + H  +L+LV   L +  
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L V  EK  F  T + FLG++V    I  D  K++AI E   PTSV EL+ FLG+ +YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEGFSRRAAPLTELLKKDY-----------PWSWSNDCQMAFENMKTTMTRGSVLGLV 180
           +F++ +++ A PLT L +  Y           P +       +F ++K+ +    +L   
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DVTKPFEVETNASDFALGGVLIQE----GHPIAYESRKLNDAE 209
             TKPF + T+AS++A+G VL Q+      PIAY SR LN  E
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTE 472

[Close]
BLAST of CmoCh18G005670 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-34
Identity = 77/213 (36.15%), Postives = 118/213 (55.40%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MP+G++ APA F   IN +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L + + KC F Q+ + F+G+ +     +   + I  + +WK P +  ELR FLG  NY R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           +F+   S+   PL  LLKKD  W W+     A EN+K  +    VL   D +K   +ET+
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASDFALGGVLIQEG-----HPIAYESRKLNDAE 209
           ASD A+G VL Q+      +P+ Y S K++ A+
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

[Close]
BLAST of CmoCh18G005670 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-34
Identity = 77/213 (36.15%), Postives = 118/213 (55.40%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MP+G++ APA F   IN +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L + + KC F Q+ + F+G+ +     +   + I  + +WK P +  ELR FLG  NY R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           +F+   S+   PL  LLKKD  W W+     A EN+K  +    VL   D +K   +ET+
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASDFALGGVLIQEG-----HPIAYESRKLNDAE 209
           ASD A+G VL Q+      +P+ Y S K++ A+
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

[Close]
BLAST of CmoCh18G005670 vs. TrEMBL
Match: A5AZI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027170 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 8.2e-78
Identity = 139/207 (67.15%), Postives = 171/207 (82.61%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F+ YLD+FV+VYLDDIV+YS TL+EHK HL+ VF  LRQN+
Sbjct: 71  MPFGLTNAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHKXHLRKVFKILRQNE 130

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH +R G++ MD+ K+KAIQEW  PT V +LRSFLGL NYYR
Sbjct: 131 LYVKKEKCSFAKEEVSFLGHRIRDGKLMMDNSKVKAIQEWDPPTKVPQLRSFLGLVNYYR 190

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S RAAPLT+LLKK+  W W   CQ AFE++K  +T   VL L D TK FEV T+
Sbjct: 191 RFIKGYSARAAPLTDLLKKNKAWEWDERCQQAFEDLKKAVTEEPVLALPDHTKVFEVHTD 250

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDA 208
           ASDFA+GGVL+QE HPIA+ESRKLNDA
Sbjct: 251 ASDFAIGGVLMQERHPIAFESRKLNDA 277

[Close]
BLAST of CmoCh18G005670 vs. TrEMBL
Match: A5B2C2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000027 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.3e-77
Identity = 137/208 (65.87%), Postives = 170/208 (81.73%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F+ YLD+FV+VYLDDIV+YS TL+EH  HL+ VF  LRQN+
Sbjct: 71  MPFGLTNAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHVEHLRKVFKILRQNE 130

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH +R G++ MD  K+KAIQEW+ PT V +LRSFLGL NYYR
Sbjct: 131 LYVKKEKCSFAKEEVSFLGHRIRDGKLMMDDSKVKAIQEWEPPTKVPQLRSFLGLVNYYR 190

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S RAAPLT+LLK++  W W   CQ AFEN+K  +T   VL L D TK FEV T+
Sbjct: 191 RFIKGYSARAAPLTDLLKRNKAWEWDERCQQAFENLKKAVTEEPVLALPDHTKVFEVHTD 250

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASDFA+GGVL+Q+ HPIA+ESRKLND E
Sbjct: 251 ASDFAIGGVLMQDRHPIAFESRKLNDTE 278

[Close]
BLAST of CmoCh18G005670 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.9e-77
Identity = 138/208 (66.35%), Postives = 170/208 (81.73%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F+ YLD+FV+ YLDDIV+YS TL+EH+ HL+ VF  LRQN+
Sbjct: 754 MPFGLTNAPATFCTLMNKIFHPYLDKFVVXYLDDIVIYSNTLKEHEEHLRKVFKILRQNK 813

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  +NFLGH +R G++ MD  K+KAIQEW  PT V +LRSFLGL NYYR
Sbjct: 814 LYVKKEKCSFAKEEVNFLGHRIRDGKLMMDDSKVKAIQEWDPPTKVPQLRSFLGLVNYYR 873

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S RAAPLT+LLKK+  W W   CQ AFE++K  +T   VL L D TK FEV T+
Sbjct: 874 RFIKGYSGRAAPLTDLLKKNKAWEWDGRCQQAFEDLKKAVTEEPVLALPDHTKVFEVHTD 933

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASDFA+GGVL+QE HPIA+ESRKLN+AE
Sbjct: 934 ASDFAIGGVLMQERHPIAFESRKLNNAE 961

[Close]
BLAST of CmoCh18G005670 vs. TrEMBL
Match: A5B1A2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028081 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-76
Identity = 137/208 (65.87%), Postives = 168/208 (80.77%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F+ YLD+FV+VYLDDIV+YS TL+EH+ HL+ VF  LRQN+
Sbjct: 71  MPFGLTNAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNE 130

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH +R G++ MD  K+KAIQEW  PT V +LRSFLGL NYYR
Sbjct: 131 LYVKKEKCSFAKDEVSFLGHRIRDGKLMMDDSKVKAIQEWDPPTKVPQLRSFLGLVNYYR 190

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S RAAPLT LLKK+  W W   CQ AFE++K  +    VL L D TK FEV T+
Sbjct: 191 RFIKGYSARAAPLTNLLKKNKAWEWDERCQQAFEDLKKAVIEEPVLALPDHTKVFEVHTD 250

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASDFA+GGVL+QE HPIA+ESRKLND E
Sbjct: 251 ASDFAIGGVLMQERHPIAFESRKLNDTE 278

[Close]
BLAST of CmoCh18G005670 vs. TrEMBL
Match: A5C2M0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019703 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.4e-76
Identity = 137/208 (65.87%), Postives = 168/208 (80.77%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F+ YLD+FV+VYLDDIV+YS TL+EH+ HL+ VF  LR N+
Sbjct: 71  MPFGLTNAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRHNK 130

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH +R G++ MD  K+KAIQEW  PT V +LRSFLGL NYYR
Sbjct: 131 LYVKKEKCSFAKKEVSFLGHRIRDGKLMMDDSKVKAIQEWDPPTKVPQLRSFLGLVNYYR 190

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++ +S RAAPLT+LLKK+  W W   CQ AFE++K  +T   VL L D TK FEV TN
Sbjct: 191 RFIKSYSGRAAPLTDLLKKNKAWEWDEKCQQAFEDLKKVVTEEPVLALPDHTKVFEVHTN 250

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           A DFA+GGVL+QE HPIA+ESRKLNDAE
Sbjct: 251 ALDFAIGGVLMQERHPIAFESRKLNDAE 278

[Close]
BLAST of CmoCh18G005670 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-22
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 48  HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGH--VVRCGQISMDSDKIKAIQEWKVPTS 107
           HL +V     Q+Q Y  ++KCAF Q  I +LGH  ++    +S D  K++A+  W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSV 167
            +ELR FLGL  YYRRFV+ + +   PLTELLKK+    W+    +AF+ +K  +T   V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LGLVDVTKPF 176
           L L D+  PF
Sbjct: 123 LALPDLKLPF 131

[Close]
BLAST of CmoCh18G005670 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83
Identity = 150/208 (72.12%), Postives = 177/208 (85.10%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+NQVF+EYLD+FV+VYLDDIVVYS T+EEH+ HL+ VF KL++NQ
Sbjct: 244 MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSMTMEEHRDHLQKVFQKLKENQ 303

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVK+EK +FAQ  INFLGHV+ CG+I M+  KI AI +W +P SVSELRSFLGLANYYR
Sbjct: 304 LYVKREKXSFAQERINFLGHVIECGRIGMEEGKIAAICDWAMPKSVSELRSFLGLANYYR 363

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RFVEGFS+RA+ LTELLKKD  W+W  +CQ AF+ +K  M  G  LG+ DVTKPFEVET+
Sbjct: 364 RFVEGFSKRASSLTELLKKDVHWNWDPECQAAFDGLKQAMMEGPRLGIADVTKPFEVETD 423

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASD+ALGG+L+Q GHPIAYESRKLN AE
Sbjct: 424 ASDYALGGMLLQNGHPIAYESRKLNAAE 451

[Close]
BLAST of CmoCh18G005670 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 310.1 bits (793), Expect = 3.0e-81
Identity = 139/208 (66.83%), Postives = 178/208 (85.58%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+NQVF ++LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQ
Sbjct: 650 MPFGLTNAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQ 709

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           L+VKKEKCAF +  I FLGH++  G+I MD +K+KAIQEWK PT+V E RSFLGLANYYR
Sbjct: 710 LFVKKEKCAFGRRQIKFLGHIIEEGKIRMDMEKVKAIQEWKTPTNVKEFRSFLGLANYYR 769

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RFV+G+S++A PLTELLKK+ PW WS +C+ AF+++K  M +  VL L D+T+PFEV+T+
Sbjct: 770 RFVKGYSKKATPLTELLKKEVPWEWSKECEGAFQDLKEAMMKDPVLALPDITRPFEVQTD 829

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASDFALGGVL+Q+GHP+AYESRKL+ AE
Sbjct: 830 ASDFALGGVLLQDGHPVAYESRKLSAAE 857

[Close]
BLAST of CmoCh18G005670 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 309.7 bits (792), Expect = 3.9e-81
Identity = 139/208 (66.83%), Postives = 178/208 (85.58%), Query Frame = 1 

Query: 1    MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
            MPFGLTNAPATFCTL+NQVF ++LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQ
Sbjct: 937  MPFGLTNAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQ 996

Query: 61   LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
            L+VKKEKCAF +  I FLGH++  G+I MD +K+KAIQEWK P +V ELRSFLGLANYYR
Sbjct: 997  LFVKKEKCAFGRRQIKFLGHIIEEGKIRMDMEKVKAIQEWKTPANVKELRSFLGLANYYR 1056

Query: 121  RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
            RFV+G+S++A PLTELLKK+ PW WS +C+ AF+++K  M +  VL L D+T+PFEV+T+
Sbjct: 1057 RFVKGYSKKATPLTELLKKEVPWEWSKECEGAFQDLKEAMMKDPVLALPDITRPFEVQTD 1116

Query: 181  ASDFALGGVLIQEGHPIAYESRKLNDAE 209
            ASDFALGGVL+Q+GHP+AYESRKL+ AE
Sbjct: 1117 ASDFALGGVLLQDGHPVAYESRKLSAAE 1144

[Close]
BLAST of CmoCh18G005670 vs. NCBI nr
Match: gi|1021499472|ref|XP_016193000.1| (PREDICTED: uncharacterized protein LOC107633926 [Arachis ipaensis])

HSP 1 Score: 302.4 bits (773), Expect = 6.2e-79
Identity = 138/208 (66.35%), Postives = 173/208 (83.17%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F  YLD+FV+VYLDDIVVYS TLEEH  HL+ VF  LR+N 
Sbjct: 148 MPFGLTNAPATFCTLMNEIFRPYLDRFVVVYLDDIVVYSNTLEEHVEHLRTVFKILRENH 207

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH+++ G + MD  K+KAI+EW+ P  VSELRSFLGLANYYR
Sbjct: 208 LYVKKEKCSFARDEVHFLGHIIKGGTLCMDQGKVKAIKEWEPPNKVSELRSFLGLANYYR 267

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S +AAPLT+LLKK++ W WS +CQ AF+ +K  +T G VL L D +K FEV T+
Sbjct: 268 RFIKGYSAKAAPLTDLLKKNHSWEWSKECQKAFDELKAAITEGPVLALPDYSKVFEVHTD 327

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASD+A+GGVL+QEGHPIA+ESRKLND E
Sbjct: 328 ASDYAIGGVLMQEGHPIAFESRKLNDTE 355

[Close]
BLAST of CmoCh18G005670 vs. NCBI nr
Match: gi|1012256373|ref|XP_015944953.1| (PREDICTED: uncharacterized protein LOC107470094 [Arachis duranensis])

HSP 1 Score: 300.1 bits (767), Expect = 3.1e-78
Identity = 136/208 (65.38%), Postives = 172/208 (82.69%), Query Frame = 1 

Query: 1   MPFGLTNAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQ 60
           MPFGLTNAPATFCTL+N++F  YLDQFV+VYLDDIVVYS TLEEH  HL+ VF  L++N 
Sbjct: 222 MPFGLTNAPATFCTLMNEIFRPYLDQFVVVYLDDIVVYSNTLEEHVEHLRTVFKILQENN 281

Query: 61  LYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYR 120
           LYVKKEKC+FA+  ++FLGH+++ G + MD  K+KAI+EW+ P  VSELRSFLGL NYY+
Sbjct: 282 LYVKKEKCSFARDEVHFLGHIIKSGTLCMDQGKVKAIKEWEPPNKVSELRSFLGLVNYYQ 341

Query: 121 RFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETN 180
           RF++G+S +AAPLT+LLKK++ W WS +CQ AF+ +K  +T G VL L D +K FEV T+
Sbjct: 342 RFIKGYSAKAAPLTDLLKKNHTWEWSKECQKAFDELKAVITEGPVLALPDYSKVFEVHTD 401

Query: 181 ASDFALGGVLIQEGHPIAYESRKLNDAE 209
           ASD+A+GGVL+QEGHPIA+ESRKLND E
Sbjct: 402 ASDYAIGGVLMQEGHPIAFESRKLNDTE 429

The following BLAST results are available for this feature:
BLAST of CmoCh18G005670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL3_DROME2.2e-4444.02Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
POL2_DROME2.3e-4143.54Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
POL5_DROME5.0e-3637.22Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
TF26_SCHPO2.7e-3436.15Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF25_SCHPO2.7e-3436.15Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmoCh18G005670 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AZI1_VITVI8.2e-7867.15Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027170 PE=4 SV=1[more]
A5B2C2_VITVI5.3e-7765.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000027 PE=4 SV=1[more]
A5BX03_VITVI6.9e-7766.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
A5B1A2_VITVI2.6e-7665.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028081 PE=4 SV=1[more]
A5C2M0_VITVI3.4e-7665.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019703 PE=4 SV=1[more]
BLAST of CmoCh18G005670 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.17.4e-2240.77ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmoCh18G005670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|1.1e-8372.12PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|1009181571|ref|XP_015872243.1|3.0e-8166.83PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009175511|ref|XP_015868924.1|3.9e-8166.83PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1021499472|ref|XP_016193000.1|6.2e-7966.35PREDICTED: uncharacterized protein LOC107633926 [Arachis ipaensis][more]
gi|1012256373|ref|XP_015944953.1|3.1e-7865.38PREDICTED: uncharacterized protein LOC107470094 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005634 nucleus
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G005670.1CmoCh18G005670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..81
score: 1.2
IPR000477Reverse transcriptase domainPROFILEPS50878RT_POLcoord: 1..82
score: 12
NoneNo IPR availableGENE3DG3DSA:3.30.70.270coord: 1..81
score: 7.9
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..208
score: 7.3
NoneNo IPR availablePANTHERPTHR24559:SF201SUBFAMILY NOT NAMEDcoord: 1..208
score: 7.3
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 1..208
score: 1.56

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G005670Cucurbita pepo (Zucchini)cmocpeB403
CmoCh18G005670Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G005670Melon (DHL92) v3.6.1cmomedB409
CmoCh18G005670Silver-seed gourdcarcmoB1391
CmoCh18G005670Watermelon (97103) v2cmowmbB377
CmoCh18G005670Wax gourdcmowgoB0523
CmoCh18G005670Cucurbita moschata (Rifu)cmocmoB168
CmoCh18G005670Cucurbita moschata (Rifu)cmocmoB170
CmoCh18G005670Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G005670Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G005670Cucurbita maxima (Rimu)cmacmoB412
CmoCh18G005670Melon (DHL92) v3.5.1cmomeB357
CmoCh18G005670Watermelon (Charleston Gray)cmowcgB340
CmoCh18G005670Watermelon (97103) v1cmowmB378