CmoCh18G005660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G005660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-directed DNA polymerase homolog
LocationCmo_Chr18 : 4714142 .. 4715110 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCGCCCGAGCTAGCCGAATTGAGGAAACAACTGGACGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGCACCTTATGGAGCCCCCGTATTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACAGTACGCAACAAATATCCTCTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGATATTATCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA

mRNA sequence

ATGGCTCCGCCCGAGCTAGCCGAATTGAGGAAACAACTGGACGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGCACCTTATGGAGCCCCCGTATTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACAGTACGCAACAAATATCCTCTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGATATTATCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA

Coding sequence (CDS)

ATGGCTCCGCCCGAGCTAGCCGAATTGAGGAAACAACTGGACGAGTTGCTGAAGGCGGGATTCATTCGCCCGGCAAAGGCACCTTATGGAGCCCCCGTATTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACAGTACGCAACAAATATCCTCTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGATATTATCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACGAACGCCCCAGCTACGTTCTGCACGTTGATCAACCAAGTTTTCTATGAATACCTGGATCAATTCGTCATAGTATACCTCGACGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTACACTTGAAGCTAGTGTTTGACAAGCTCCGGCAGAACCAGTTGTATGTGAAAAAGGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCTGAGTTGCGGTCCTTCCTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACTACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATATGAAAACAACCATGACGAGGGGTTCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCAATGCTTCCGACTTTGCTCTCGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAACGATGCCGAATGA
Homology
[Close]
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.9e-68
Identity = 129/321 (40.19%), Postives = 205/321 (63.86%), Query Frame = 1 

Query: 8   ELRKQLDELLKAGFIRPAKAPYGAPV-LFQKKKDGT----LRLCIDYRALNKVTVRNKYP 67
           E+  Q+ ++L  G IR + +PY +P+ +  KK+D +     R+ IDYR LN++TV +++P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281

Query: 68  LPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA 127
           +P + ++  +L    YFT +DL  G++Q+ +      KT   T++G +E+L MPFGL NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341

Query: 128 PATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKC 187
           PATF   +N +    L++  +VYLDDI+V+ST+L+EH   L LVF+KL +  L ++ +KC
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401

Query: 188 AFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSR 247
            F +    FLGHV+    I  + +KI+AIQ++ +PT   E+++FLGL  YYR+F+  F+ 
Sbjct: 402 EFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFAD 461

Query: 248 RAAPLTELLKKDYPWSWSN-DCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFALG 307
            A P+T+ LKK+     +N +   AF+ +K  ++   +L + D TK F + T+ASD ALG
Sbjct: 462 IAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALG 521

Query: 308 GVLIQEGHPIAYESRKLNDAE 323
            VL Q+GHP++Y SR LN+ E
Sbjct: 522 AVLSQDGHPLSYISRTLNEHE 542

[Close]
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.6e-65
Identity = 130/321 (40.50%), Postives = 194/321 (60.44%), Query Frame = 1 

Query: 8   ELRKQLDELLKAGFIRPAKAPYGAPV-LFQKKKDGT----LRLCIDYRALNKVTVRNKYP 67
           E+  Q+ E+L  G IR + +PY +P  +  KK D +     R+ IDYR LN++T+ ++YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA 127
           +P + ++  +L   +YFT +DL  G++Q+ + E    KT   T+ G +E+L MPFGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKC 187
           PATF   +N +    L++  +VYLDDI+++ST+L EH   ++LVF KL    L ++ +KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 AFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSR 247
            F +   NFLGH+V    I  +  K+KAI  + +PT   E+R+FLGL  YYR+F+  ++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 RAAPLTELLKKDYPWSWSN-DCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFALG 307
            A P+T  LKK         +   AFE +K  + R  +L L D  K F + T+AS+ ALG
Sbjct: 461 IAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALG 520

Query: 308 GVLIQEGHPIAYESRKLNDAE 323
            VL Q GHPI++ SR LND E
Sbjct: 521 AVLSQNGHPISFISRTLNDHE 541

[Close]
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.8e-64
Identity = 125/327 (38.23%), Postives = 191/327 (58.41%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           + P ++  +  ++++ LK+G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
            APA F   IN +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + 
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC F Q+ + F+G+ +     +   + I  + +WK P +  ELR FLG  NY R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+   PL  LLKKD  W W+     A EN+K  +    VL   D +K   +ET+ASD A+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GGVLIQEG-----HPIAYESRKLNDAE 323
           G VL Q+      +P+ Y S K++ A+
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

[Close]
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.8e-64
Identity = 125/327 (38.23%), Postives = 191/327 (58.41%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           + P ++  +  ++++ LK+G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
            APA F   IN +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + 
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC F Q+ + F+G+ +     +   + I  + +WK P +  ELR FLG  NY R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+   PL  LLKKD  W W+     A EN+K  +    VL   D +K   +ET+ASD A+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GGVLIQEG-----HPIAYESRKLNDAE 323
           G VL Q+      +P+ Y S K++ A+
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

[Close]
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.8e-64
Identity = 125/327 (38.23%), Postives = 191/327 (58.41%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           + P ++  +  ++++ LK+G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
            APA F   IN +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + 
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC F Q+ + F+G+ +     +   + I  + +WK P +  ELR FLG  NY R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+   PL  LLKKD  W W+     A EN+K  +    VL   D +K   +ET+ASD A+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GGVLIQEG-----HPIAYESRKLNDAE 323
           G VL Q+      +P+ Y S K++ A+
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

[Close]
BLAST of CmoCh18G005660 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 4.9e-138
Identity = 234/322 (72.67%), Postives = 278/322 (86.34%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           MAPPEL ELR+QL ELL AGFI+P+KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NK
Sbjct: 640 MAPPELEELRRQLKELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNK 699

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+I+DLFDQL  A+YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLT
Sbjct: 700 YPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 759

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+N++F+ YLD+FV+ YLDDIV+YS TL+EH+ HL+ VF  LRQN+LYVKKE
Sbjct: 760 NAPATFCTLMNKIFHPYLDKFVVXYLDDIVIYSNTLKEHEEHLRKVFKILRQNKLYVKKE 819

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC+FA+  +NFLGH +R G++ MD  K+KAIQEW  PT V +LRSFLGL NYYRRF++G+
Sbjct: 820 KCSFAKEEVNFLGHRIRDGKLMMDDSKVKAIQEWDPPTKVPQLRSFLGLVNYYRRFIKGY 879

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S RAAPLT+LLKK+  W W   CQ AFE++K  +T   VL L D TK FEV T+ASDFA+
Sbjct: 880 SGRAAPLTDLLKKNKAWEWDGRCQQAFEDLKKAVTEEPVLALPDHTKVFEVHTDASDFAI 939

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QE HPIA+ESRKLN+AE
Sbjct: 940 GGVLMQERHPIAFESRKLNNAE 961

[Close]
BLAST of CmoCh18G005660 vs. TrEMBL
Match: A0A087PJF6_9PROT (Uncharacterized protein OS=Acetobacter malorum GN=AmDm5_3101 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.7e-133
Identity = 225/322 (69.88%), Postives = 277/322 (86.02%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           M+PPEL ELRKQL+ELL AG+I+P+K+PYGAPVLFQ+KK+G+LRLCIDYRALNK+T++NK
Sbjct: 470 MSPPELEELRKQLNELLDAGYIQPSKSPYGAPVLFQRKKEGSLRLCIDYRALNKITIKNK 529

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLP+I+DLFDQL  A+YFTKLDLRSGYYQVRIA GDE KT  VTRYGAFE+ VMPFG+T
Sbjct: 530 YPLPLIADLFDQLGEARYFTKLDLRSGYYQVRIAPGDESKTAMVTRYGAFEYKVMPFGMT 589

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+N+VF+ YLD+FV+VY+DDIVVYS TLEEH  HL++VF  LR+++LYVKKE
Sbjct: 590 NAPATFCTLMNKVFHPYLDKFVVVYIDDIVVYSKTLEEHVKHLRIVFKTLREHELYVKKE 649

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC+FA   + FLGH ++ G++ M+  KIKAIQEW+ PT V  LRSFLGLANYYRRF++G+
Sbjct: 650 KCSFATKEVEFLGHKIKEGKLMMEKGKIKAIQEWEPPTKVPTLRSFLGLANYYRRFIKGY 709

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S  AAPLT+LLKK+  W W++ CQ AFE +K  +    VL L D++KPFE+ T+ASDFA+
Sbjct: 710 SAIAAPLTDLLKKNKAWEWTDRCQEAFERLKKALMEELVLRLPDLSKPFELHTDASDFAI 769

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QEGHPIAYESRKLN+AE
Sbjct: 770 GGVLMQEGHPIAYESRKLNNAE 791

[Close]
BLAST of CmoCh18G005660 vs. TrEMBL
Match: A5AXU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 1.9e-129
Identity = 218/322 (67.70%), Postives = 267/322 (82.92%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           M+P EL ELRKQL ELL AG I+P++APYGAPV+FQKK DG+LR+C+DYRALNKVT++NK
Sbjct: 551 MSPAELLELRKQLKELLDAGLIQPSRAPYGAPVIFQKKHDGSLRMCVDYRALNKVTIKNK 610

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+ ++LFD+L  A YFTKLDLRSGY+QVR+  GDE KTTCVTRYG++EFLVMPFGLT
Sbjct: 611 YPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVXAGDEGKTTCVTRYGSYEFLVMPFGLT 670

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFC L+N V ++YLD FV+VYLDDIVVYS TL EH+ HL+LVF +LR+N+LYVK E
Sbjct: 671 NAPATFCNLMNDVLFDYLDAFVVVYLDDIVVYSKTLTEHEKHLRLVFQRLRENRLYVKPE 730

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC FAQ  I FLGH +  G I MD  K++AI EW V + V+ELRSFLGLANYYRRF++G+
Sbjct: 731 KCEFAQEEITFLGHKISAGLIRMDKGKVQAIMEWTVXSKVTELRSFLGLANYYRRFIKGY 790

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+  +PLT+LLKKD  W WS  CQMAFE++K  M+   VL L D+  PFE +T+ASD AL
Sbjct: 791 SKTVSPLTDLLKKDNQWDWSRQCQMAFESLKEAMSTEPVLRLPDLDLPFEXQTDASDRAL 850

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QEGHP+A+ESRKLN+AE
Sbjct: 851 GGVLVQEGHPVAFESRKLNNAE 872

[Close]
BLAST of CmoCh18G005660 vs. TrEMBL
Match: A5AUJ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 2.4e-129
Identity = 218/322 (67.70%), Postives = 267/322 (82.92%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           M+P EL ELRKQL ELL AG I+P++APYGAPVLFQKK DG+LR+C+DYRALNKVT++NK
Sbjct: 576 MSPAELLELRKQLKELLDAGLIQPSRAPYGAPVLFQKKHDGSLRMCVDYRALNKVTIKNK 635

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+ ++LFD+L  A YFTKLDLRSGY+QVR+A GDE KTTCV RYG++EFLVMPFGLT
Sbjct: 636 YPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVAAGDEGKTTCVXRYGSYEFLVMPFGLT 695

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFC L+N V ++YLD FV+VYLDDIVVYS TL EH+ HL+LVF +LR+N+LYVK E
Sbjct: 696 NAPATFCNLMNDVLFDYLDXFVVVYLDDIVVYSKTLTEHEKHLRLVFQRLRENRLYVKPE 755

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC FAQ  I FLGH +  G I MD  K++AI EW VP+ V+ELRSFLGLANYYRRF++G+
Sbjct: 756 KCEFAQEEITFLGHKISAGLIRMDKGKVQAIMEWTVPSKVTELRSFLGLANYYRRFIKGY 815

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+  +PLT+LLKKD  W WS  CQMAFE++K  M+    L L D+   FEV+T+AS+ AL
Sbjct: 816 SKTVSPLTDLLKKDNQWDWSRQCQMAFESLKEAMSTEPXLRLPDLDLXFEVQTDASBRAL 875

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QEGHP+A+ESRKLN+AE
Sbjct: 876 GGVLVQEGHPVAFESRKLNNAE 897

[Close]
BLAST of CmoCh18G005660 vs. TrEMBL
Match: A5BVZ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028502 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 9.2e-129
Identity = 219/322 (68.01%), Postives = 266/322 (82.61%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           M+P EL ELRKQL ELL AG I+P++APYGAPVLFQKK DG+LR+C+DYRALNKVT++NK
Sbjct: 455 MSPAELLELRKQLKELLDAGLIQPSRAPYGAPVLFQKKHDGSLRMCVDYRALNKVTIKNK 514

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+ ++LFD+L  A YFTKLDLRSGY+QVR+A GDE KTTCVTRYG++EFLVMPFGLT
Sbjct: 515 YPIPLAAELFDRLSKASYFTKLDLRSGYWQVRVAAGDEGKTTCVTRYGSYEFLVMPFGLT 574

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NA ATFC L+N V ++YLD FV+VYLDDIVVYS TL E + HL+LVF +LR+N+LYVK E
Sbjct: 575 NALATFCNLMNDVLFDYLDAFVVVYLDDIVVYSKTLTEQEKHLRLVFQRLRENRLYVKPE 634

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC FAQ  I FLGH +  G I MD  K+ AI EW  P+ V+ELRSFLGLANYYRRF++G+
Sbjct: 635 KCEFAQEEITFLGHKISAGLIRMDKGKVHAIMEWIAPSKVTELRSFLGLANYYRRFIKGY 694

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+  +PLT+LLKKD  W WS  CQMAFE++K  M+   VL L D+  PFEV+T+ASD AL
Sbjct: 695 SKTVSPLTDLLKKDNQWDWSRQCQMAFESLKEAMSTEPVLRLPDLDLPFEVQTDASDRAL 754

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QEGHP+A+ESRKLN+AE
Sbjct: 755 GGVLVQEGHPVAFESRKLNNAE 776

[Close]
BLAST of CmoCh18G005660 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 162 HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGH--VVRCGQISMDSDKIKAIQEWKVPTS 221
           HL +V     Q+Q Y  ++KCAF Q  I +LGH  ++    +S D  K++A+  W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSV 281
            +ELR FLGL  YYRRFV+ + +   PLTELLKK+    W+    +AF+ +K  +T   V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 122

Query: 282 LGLVDVTKPF 290
           L L D+  PF
Sbjct: 123 LALPDLKLPF 131

[Close]
BLAST of CmoCh18G005660 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 542.7 bits (1397), Expect = 4.2e-151
Identity = 258/322 (80.12%), Postives = 290/322 (90.06%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           MAPPELAELRKQLDELL AGFIRPAKAPYGAPVLFQKKKDG+LRLCIDYRALNK+TVRNK
Sbjct: 130 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 189

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 190 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 249

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+NQVF+EYLD+FV+VYLDDIVVYS T+EEH+ HL+ VF KL++NQLYVK+E
Sbjct: 250 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSMTMEEHRDHLQKVFQKLKENQLYVKRE 309

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           K +FAQ  INFLGHV+ CG+I M+  KI AI +W +P SVSELRSFLGLANYYRRFVEGF
Sbjct: 310 KXSFAQERINFLGHVIECGRIGMEEGKIAAICDWAMPKSVSELRSFLGLANYYRRFVEGF 369

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S+RA+ LTELLKKD  W+W  +CQ AF+ +K  M  G  LG+ DVTKPFEVET+ASD+AL
Sbjct: 370 SKRASSLTELLKKDVHWNWDPECQAAFDGLKQAMMEGPRLGIADVTKPFEVETDASDYAL 429

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GG+L+Q GHPIAYESRKLN AE
Sbjct: 430 GGMLLQNGHPIAYESRKLNAAE 451

[Close]
BLAST of CmoCh18G005660 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 525.8 bits (1353), Expect = 5.4e-146
Identity = 242/322 (75.16%), Postives = 289/322 (89.75%), Query Frame = 1 

Query: 1    MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
            MAPPELAELRKQL ELL+AGF+RP+KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNK
Sbjct: 823  MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNK 882

Query: 61   YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
            YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLT
Sbjct: 883  YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLT 942

Query: 121  NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
            NAPATFCTL+NQVF ++LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL+VKKE
Sbjct: 943  NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFVKKE 1002

Query: 181  KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
            KCAF +  I FLGH++  G+I MD +K+KAIQEWK P +V ELRSFLGLANYYRRFV+G+
Sbjct: 1003 KCAFGRRQIKFLGHIIEEGKIRMDMEKVKAIQEWKTPANVKELRSFLGLANYYRRFVKGY 1062

Query: 241  SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
            S++A PLTELLKK+ PW WS +C+ AF+++K  M +  VL L D+T+PFEV+T+ASDFAL
Sbjct: 1063 SKKATPLTELLKKEVPWEWSKECEGAFQDLKEAMMKDPVLALPDITRPFEVQTDASDFAL 1122

Query: 301  GGVLIQEGHPIAYESRKLNDAE 323
            GGVL+Q+GHP+AYESRKL+ AE
Sbjct: 1123 GGVLLQDGHPVAYESRKLSAAE 1144

[Close]
BLAST of CmoCh18G005660 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 523.9 bits (1348), Expect = 2.0e-145
Identity = 241/322 (74.84%), Postives = 288/322 (89.44%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           MAPPELAELRKQL ELL+AGF+RP+KAPYGAPVLFQKKKDG LRLC+DYRALNKVTVRNK
Sbjct: 536 MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGILRLCVDYRALNKVTVRNK 595

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLT
Sbjct: 596 YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLT 655

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+NQVF ++LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL+VKKE
Sbjct: 656 NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFVKKE 715

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KCAF +  I FLGH++  G+I MD +K+KAIQEWK PT+V E RSFLGLANYYRRFV+G+
Sbjct: 716 KCAFGRRQIKFLGHIIEEGKIRMDMEKVKAIQEWKTPTNVKEFRSFLGLANYYRRFVKGY 775

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S++A PLTELLKK+ PW WS +C+ AF+++K  M +  VL L D+T+PFEV+T+ASDFAL
Sbjct: 776 SKKATPLTELLKKEVPWEWSKECEGAFQDLKEAMMKDPVLALPDITRPFEVQTDASDFAL 835

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+Q+GHP+AYESRKL+ AE
Sbjct: 836 GGVLLQDGHPVAYESRKLSAAE 857

[Close]
BLAST of CmoCh18G005660 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 516.2 bits (1328), Expect = 4.3e-143
Identity = 238/322 (73.91%), Postives = 284/322 (88.20%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           MAPPELAELRKQL ELL+AGF+RP+KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNK
Sbjct: 465 MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNK 524

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPF LT
Sbjct: 525 YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFELT 584

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+NQVF ++LD+FV+VYLDDIV++  TLEEH  H+++V  +LR+NQL+VKKE
Sbjct: 585 NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFRPTLEEHVEHIRMVLQRLRENQLFVKKE 644

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KCAF +  I FLGH++  G+I MD +K+KAIQEWK PT+V ELRSFLGLANYYRRFV+G+
Sbjct: 645 KCAFGRRQIKFLGHIIEEGKIRMDMEKVKAIQEWKTPTNVKELRSFLGLANYYRRFVKGY 704

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S++A PL ELLKK+ PW WS +C+  F ++K  M +  VL L D+ +PFEV+T+ASDFAL
Sbjct: 705 SKKATPLMELLKKEVPWEWSKECEGTFHDLKEAMMKDPVLALPDIARPFEVQTDASDFAL 764

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+Q+GHP+AYESRKL+ AE
Sbjct: 765 GGVLLQDGHPVAYESRKLSAAE 786

[Close]
BLAST of CmoCh18G005660 vs. NCBI nr
Match: gi|1009176455|ref|XP_015869440.1| (PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba])

HSP 1 Score: 500.4 bits (1287), Expect = 2.4e-138
Identity = 233/322 (72.36%), Postives = 278/322 (86.34%), Query Frame = 1 

Query: 1   MAPPELAELRKQLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNK 60
           M+P EL ELR+QL ELL AG+I+P+KAPYGAPVLFQKK DG+LRLCIDYRALNKVT++NK
Sbjct: 461 MSPSELEELRRQLKELLDAGYIQPSKAPYGAPVLFQKKHDGSLRLCIDYRALNKVTIKNK 520

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YP+P+I+DLFDQL GA+YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGA+EFLVMPFGLT
Sbjct: 521 YPIPLIADLFDQLGGARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAYEFLVMPFGLT 580

Query: 121 NAPATFCTLINQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKE 180
           NAPATFCTL+N++F+ YLD+FV+VYLDDIV+YS TLEEH  HL++VF  L+ N+LYVK+E
Sbjct: 581 NAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSKTLEEHIHHLRIVFKVLKDNELYVKRE 640

Query: 181 KCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGF 240
           KC+FA   + FLGH ++ G++ MD  K+KAIQEW  PT VSELRSFLGL NYYRRF++G+
Sbjct: 641 KCSFATNEVYFLGHKIKDGKLHMDEAKVKAIQEWDPPTKVSELRSFLGLVNYYRRFIKGY 700

Query: 241 SRRAAPLTELLKKDYPWSWSNDCQMAFENMKTTMTRGSVLGLVDVTKPFEVETNASDFAL 300
           S  AAPLT+LLKK+  WSWS  CQ AFEN+K  + +  VL L D +KPFEV T+ASDFA+
Sbjct: 701 SALAAPLTDLLKKNKTWSWSTQCQQAFENLKEAIMKEPVLALPDCSKPFEVHTDASDFAI 760

Query: 301 GGVLIQEGHPIAYESRKLNDAE 323
           GGVL+QE HPIA+ESRKLND E
Sbjct: 761 GGVLMQERHPIAFESRKLNDTE 782

The following BLAST results are available for this feature:
BLAST of CmoCh18G005660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL3_DROME5.9e-6840.19Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
POL2_DROME4.6e-6540.50Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
TF26_SCHPO1.8e-6438.23Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF25_SCHPO1.8e-6438.23Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF24_SCHPO1.8e-6438.23Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmoCh18G005660 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BX03_VITVI4.9e-13872.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
A0A087PJF6_9PROT4.7e-13369.88Uncharacterized protein OS=Acetobacter malorum GN=AmDm5_3101 PE=4 SV=1[more]
A5AXU3_VITVI1.9e-12967.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1[more]
A5AUJ7_VITVI2.4e-12967.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1[more]
A5BVZ5_VITVI9.2e-12968.01Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028502 PE=4 SV=1[more]
BLAST of CmoCh18G005660 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.11.2e-2140.77ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmoCh18G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|4.2e-15180.12PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|1009175511|ref|XP_015868924.1|5.4e-14675.16PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1009181571|ref|XP_015872243.1|2.0e-14574.84PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009161831|ref|XP_015899105.1|4.3e-14373.91PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba][more]
gi|1009176455|ref|XP_015869440.1|2.4e-13872.36PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G005660.1CmoCh18G005660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 37..195
score: 3.4
IPR000477Reverse transcriptase domainPROFILEPS50878RT_POLcoord: 17..196
score: 13
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 4..116
score: 8.6
NoneNo IPR availableGENE3DG3DSA:3.30.70.270coord: 117..195
score: 1.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 29..322
score: 5.1E
NoneNo IPR availablePANTHERPTHR24559:SF201SUBFAMILY NOT NAMEDcoord: 29..322
score: 5.1E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 2..322
score: 1.22E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G005660CmoCh13G003730Cucurbita moschata (Rifu)cmocmoB168
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G005660Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G005660Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G005660Cucurbita maxima (Rimu)cmacmoB412
CmoCh18G005660Melon (DHL92) v3.5.1cmomeB357
CmoCh18G005660Watermelon (Charleston Gray)cmowcgB340
CmoCh18G005660Watermelon (97103) v1cmowmB378
CmoCh18G005660Cucurbita pepo (Zucchini)cmocpeB403
CmoCh18G005660Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G005660Melon (DHL92) v3.6.1cmomedB409
CmoCh18G005660Silver-seed gourdcarcmoB1391
CmoCh18G005660Watermelon (97103) v2cmowmbB377
CmoCh18G005660Wax gourdcmowgoB0523
CmoCh18G005660Cucurbita moschata (Rifu)cmocmoB170