CmoCh18G005090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G005090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, unclassified
LocationCmo_Chr18 : 3653083 .. 3654827 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCCGAAATGCCTAAGAGGTTCTGGAGAGAGGCAGAAATGACGGTCGTCTACCTTCTCAATCGATCGCCGACACGAAGCCTCGACGAGAAGACGCCACACGAGGCCTGGTACAACAAGAAGCCAGCGATACATCATCAACGAGTGTTCGGTTGCGCCACATACATGAAGGTTGCCCGTCCCCACCTCGCCATGCTCGATCCCAGGGGGCTGAAGGTCGTCTCCATCGGCTACGAACCAGGAGCAAGGTGTACAAGCTCTATGATCCTGCGGGGGGCGAGCTCACGTGTCGCACGACGTCATCTTCAACGAGAGCACCTTCTGGCTGTGGAACGATGTGACCGAGGCGGACCAAAACCCAAATTAATTCACAATGGAGTACCTCGTCACCAAGCCGGGAGAAGGAGGAGCACAGCATCGAGAGCCGTCACCGTCAACAACAGCTGCACCCCCTGAACCAGTAGAATTTGCAATATCACATACTACGGATTCGACACTAGATGCTAATCACGATGATGATCTGGTGGCCAGGTACCGGGGGGATGGAAGACCTAGTGGGAAGAGGTGAACCACCTGGACCGGCAGCGCGCAAACTCGAAGAAAAGGTGGCCGAACTACATGCCATTAGCACAGATAAACTGAACATCTTCGCCGAAGCAGAAAGGAAACCGTGCTGGTTGAAGGCAATGTAGGAAGAGATGACATCCATCACTGAGAACAAGACGTGGAGTTTGGAGGACATGCCGCTGGGACACCAAGCCATAGGGCTCAAATGAGTCTTCAAATTGAAGTGTAACGAAGAGGGAGAAGTTATGAAGCACAAGGTCCGTCTGGTGACGAAGGGCTACGTCCCCAGAAGCAAGTAGTGGACTTCGAAGAGGTATTCGCGCCAGTGGCAAGGTTGAAATTTGTCCGCCTATTGCTGGAGATCACGGCACATCATTCTTGGGAGGTCCACTACATGGACGTGAAGTTCGCTTTCCTCAACAGAGAGTTGAAGGAGACCATCTATGTCCGACAACTATCGGGATTTCTAGGTAACGACAACCCCGACAAGGTACTGCGCCTACACAAGGCACTGTATGGGCTTTGGCAAGCACCACAAGCCTAGAACGCGAAGCTCGACAGTACCCTGCTATCACTGAAGTTCAAACGTTGTACATGCACAGCCACTGCGAGCATCGACTGATCGTGGGAGTGTACGTCGACGACCTCCTAATCACTAGAGGTGACATGAAAGTCCTTGGAGATTCAAGAGGTTGATGTCAAAGAACTTCAAGATGAGTGATCTCGGCGTGCTTAGCTACTACCTTGGCATCGAAGTGCAATAGAGTACTGTCAGGATCACCATCTGTCAAGGTGCGTACGCAAAGAAGCTGTTGGACACAGCTGGGCTTGCGGACAGTAACCCTACAAGGACGCCAATGGAGGCTCGACTTCAGTTGAGGAAGGCCGACACTACGATGGCAGTCGACTCCACCAATTACCGCAGCATTGTCAGGAGCTTGCGCTATCTGGTAAACACATACCCTGACCTTGCTTATTTCGTTGGATACGTGAGTAGGTTTATGGAAGCATCTAGGGAGGAGCATCTTGTGGCTGTCAAGCGCATCCTGCGCTACGTGGCCGGAACCAGAGGCTGGAGTGTGAAATACTGTGTAGGGAGAGGAAAGGAGAAGCTTGAGCTGGTCGGCTACAATGATAGTGACATGGCTGGTGACGTTGTGACGGCAGCAACATAA

mRNA sequence

ATGACGGCCGAAATGCCTAAGAGGTTCTGGAGAGAGGCAGAAATGACGGTCGTCTACCTTCTCAATCGATCGCCGACACGAAGCCTCGACGAGAAGACGCCACACGAGGCCTGGTACAACAAGAAGCCAGCGATACATCATCAACGAGTGTTCGGTTGCGCCACATACATGAAGGTTGCCCGTCCCCACCTCGCCATGCTCGATCCCAGGGGGCTGAAGGTCGTCTCCATCGGCTACGAACCAGGAGCAAGGTGTACAAGCTCTATGATCCTGCGGGGGGCGAGCTCACGTGTCGCACGACGTCATCTTCAACGAGAGCACCTTCTGGCTGTGGAACGATGTACCGGGGGGATGGAAGACCTAGTGGGAAGAGGTGAACCACCTGGACCGGCAGCGCGCAAACTCGAAGAAAAGGTGGCCGAACTACATGCCATTAGCACAGATAAACTGAACATCTTCGCCGAAGCAGAAAGGAAACCGTGCTGGTTGAAGGCAATAGGGAGAAGTTATGAAGCACAAGGTCCGTCTGGTGACGAAGGGCTACGTCCCCAGAAGCAAGTAGTGGACTTCGAAGAGGTATTCGCGCCAGTGGCAAGGTTGAAATTTGTCCGCCTATTGCTGGAGATCACGGCACATCATTCTTGGGAGGTCCACTACATGGACGTGAAGTTCGCTTTCCTCAACAGAGAGTTGAAGGAGACCATCTATGTCCGACAACTATCGGGATTTCTAGGTAACGACAACCCCGACAAGGTACTGCGCCTACACAAGGCACTCCACTGCGAGCATCGACTGATCGTGGGAGTGTACGTCGACGACCTCCTAATCACTAGAGGTGACATGAAAGTCCTTGGAGATTCAAGAGGTGCGTACGCAAAGAAGCTGTTGGACACAGCTGGGCTTGCGGACAGTAACCCTACAAGGACGCCAATGGAGGCTCGACTTCAGTTGAGGAAGGCCGACACTACGATGGCAGTCGACTCCACCAATTACCGCAGCATTGTCAGGAGCTTGCGCTATCTGGTAAACACATACCCTGACCTTGCTTATTTCGTTGGATACGTGAGTAGGTTTATGGAAGCATCTAGGGAGGAGCATCTTGTGGCTGTCAAGCGCATCCTGCGCTACGTGGCCGGAACCAGAGGCTGGAGTGTGAAATACTGTGTAGGGAGAGGAAAGGAGAAGCTTGAGCTGGTCGGCTACAATGATAGTGACATGGCTGGTGACGTTGTGACGGCAGCAACATAA

Coding sequence (CDS)

ATGACGGCCGAAATGCCTAAGAGGTTCTGGAGAGAGGCAGAAATGACGGTCGTCTACCTTCTCAATCGATCGCCGACACGAAGCCTCGACGAGAAGACGCCACACGAGGCCTGGTACAACAAGAAGCCAGCGATACATCATCAACGAGTGTTCGGTTGCGCCACATACATGAAGGTTGCCCGTCCCCACCTCGCCATGCTCGATCCCAGGGGGCTGAAGGTCGTCTCCATCGGCTACGAACCAGGAGCAAGGTGTACAAGCTCTATGATCCTGCGGGGGGCGAGCTCACGTGTCGCACGACGTCATCTTCAACGAGAGCACCTTCTGGCTGTGGAACGATGTACCGGGGGGATGGAAGACCTAGTGGGAAGAGGTGAACCACCTGGACCGGCAGCGCGCAAACTCGAAGAAAAGGTGGCCGAACTACATGCCATTAGCACAGATAAACTGAACATCTTCGCCGAAGCAGAAAGGAAACCGTGCTGGTTGAAGGCAATAGGGAGAAGTTATGAAGCACAAGGTCCGTCTGGTGACGAAGGGCTACGTCCCCAGAAGCAAGTAGTGGACTTCGAAGAGGTATTCGCGCCAGTGGCAAGGTTGAAATTTGTCCGCCTATTGCTGGAGATCACGGCACATCATTCTTGGGAGGTCCACTACATGGACGTGAAGTTCGCTTTCCTCAACAGAGAGTTGAAGGAGACCATCTATGTCCGACAACTATCGGGATTTCTAGGTAACGACAACCCCGACAAGGTACTGCGCCTACACAAGGCACTCCACTGCGAGCATCGACTGATCGTGGGAGTGTACGTCGACGACCTCCTAATCACTAGAGGTGACATGAAAGTCCTTGGAGATTCAAGAGGTGCGTACGCAAAGAAGCTGTTGGACACAGCTGGGCTTGCGGACAGTAACCCTACAAGGACGCCAATGGAGGCTCGACTTCAGTTGAGGAAGGCCGACACTACGATGGCAGTCGACTCCACCAATTACCGCAGCATTGTCAGGAGCTTGCGCTATCTGGTAAACACATACCCTGACCTTGCTTATTTCGTTGGATACGTGAGTAGGTTTATGGAAGCATCTAGGGAGGAGCATCTTGTGGCTGTCAAGCGCATCCTGCGCTACGTGGCCGGAACCAGAGGCTGGAGTGTGAAATACTGTGTAGGGAGAGGAAAGGAGAAGCTTGAGCTGGTCGGCTACAATGATAGTGACATGGCTGGTGACGTTGTGACGGCAGCAACATAA
Homology
[Close]
BLAST of CmoCh18G005090 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-13
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1 

Query: 287  SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTN------YRSIVRSLRY 346
            S+  Y +++L+   + ++ P  TP+   L+L K      V+         Y S V SL Y
Sbjct: 1061 SQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMY 1120

Query: 347  -LVNTYPDLAYFVGYVSRFMEASREEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELV 406
             +V T PD+A+ VG VSRF+E   +EH  AVK ILRY+ GT G     C+  G     L 
Sbjct: 1121 AMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTG----DCLCFGGSDPILK 1180

Query: 407  GYNDSDMAGDV 411
            GY D+DMAGD+
Sbjct: 1181 GYTDADMAGDI 1187

[Close]
BLAST of CmoCh18G005090 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 6.9e-13
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1 

Query: 3   AEMPKRFWREAEMTVVYLLNRSPTRSL--DEKTPHEAWYNKKPAIHHQRVFGCATYMKVA 62
           A++ K FW EA +T  YL+NR P+R+L    KTP+E W+NKKP + H RVFG   Y+ + 
Sbjct: 603 AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIK 662

Query: 63  RPHLAMLDPRGLKVVSIGYEP 82
                  D +  K + +GYEP
Sbjct: 663 NKQ-GKFDDKSFKSIFVGYEP 682

[Close]
BLAST of CmoCh18G005090 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-09
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1 

Query: 287 SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYP 346
           S+  YA+++L+ AG+ D  P  TP+  +L      T    D +++RSIV +L+YL  T P
Sbjct: 57  SQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRP 116

Query: 347 DLAYFVGYVSRFMEASREEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELVGYNDSDM 406
           D++Y V  V + M          +KR+LRYV GT    +         KL +  + DSD 
Sbjct: 117 DISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYI---HKNSKLNVQAFCDSDW 174

Query: 407 AG 409
           AG
Sbjct: 177 AG 174

[Close]
BLAST of CmoCh18G005090 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 53/176 (30.11%), Postives = 73/176 (41.48%), Query Frame = 1 

Query: 265 LIVGVYVDDLLITRGD----------------MKVLG------------DSRGAYAKKLL 324
           + + VYVDDLL+                    MK LG             S G     L 
Sbjct: 82  IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQ 141

Query: 325 DTAGLADSNP-------TRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNT-YPDL 384
           D    A S         T+TP+     L +  +    D T Y+SIV  L +  NT  PD+
Sbjct: 142 DYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDI 201

Query: 385 AYFVGYVSRFMEASREEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELVGYNDS 405
           +Y V  +SRF+   R  HL + +R+LRY+  TR   +KY   R   +L L  Y D+
Sbjct: 202 SYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY---RSGSQLALTVYCDA 254

[Close]
BLAST of CmoCh18G005090 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 135/297 (45.45%), Postives = 174/297 (58.59%), Query Frame = 1 

Query: 184  QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
            Q+Q +D+EEVFAPVAR++ VR+LL + AH SW VH+MDVK AFLN +L E +YV+Q  GF
Sbjct: 1016 QRQGIDYEEVFAPVARIESVRVLLAVAAHRSWSVHHMDVKSAFLNGDLAEEVYVQQPPGF 1075

Query: 244  LGNDNPDKVLRLHKALH--------------------------CEH----------RLIV 303
            +   +  KVL+LHKAL+                          CEH          RL+V
Sbjct: 1076 VAAGHERKVLKLHKALYGLKQAPRAWNSKLDSSLLMLGFARSECEHGLYTRSDGEKRLVV 1135

Query: 304  GVYVDDLLITRG-------------------DMKVLGDSRG---------------AYAK 363
            G+YVDDL+IT G                   D+ VL    G               AYAK
Sbjct: 1136 GIYVDDLIITGGSTEVINTFKTEMKTLFRMSDLGVLSYYLGIEVRQGRRGIELLQAAYAK 1195

Query: 364  KLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVG 411
            K+L+ AG+   NP  TPMEARL+L K  T+ AVD+T YRS++ SLRYL+NT PD+A+ VG
Sbjct: 1196 KILEKAGMGTCNPCATPMEARLKLSKQSTSPAVDATEYRSLIGSLRYLMNTRPDMAFAVG 1255

[Close]
BLAST of CmoCh18G005090 vs. TrEMBL
Match: Q7XZY2_ORYSJ (Putative gag/pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0093M23.16 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 171/486 (35.19%), Postives = 234/486 (48.15%), Query Frame = 1 

Query: 12  EAEMTVVYLLNRSPTRSLDEKTPHEAWYNKKPAIHHQRVFGCATYMKVARPHLAMLDPRG 71
           EA +  +YLLNRSPT+S+D  TP+EAW+ ++PA+ H RVFGC  Y+K  +P+L  LD R 
Sbjct: 160 EAVVAAIYLLNRSPTKSVDGITPYEAWHGRRPAVEHLRVFGCVGYVKTVKPNLRKLDDR- 219

Query: 72  LKVVSIGYEPGARCTSSMILRGASSRVARRHLQREHLLAV----------ERCTGGMEDL 131
               ++G E    CT        +    RR+    + LA           E C    E+ 
Sbjct: 220 ----AVGIE---FCTPPTDASRGTDEAPRRYRTVANTLATMQPILDFDYSEECLLSEEEP 279

Query: 132 VG--RGEPPGPAARKLEEKVAELHAISTDKLNIFAEAERKPCWLKAIGR-SYEAQGPSGD 191
                 E      + + E++  +   ST  L        KP  LK + +   +A G    
Sbjct: 280 TSFLEAEKQSCCRKAMLEEMKSIENNSTWCLTNLPP-RHKPIGLKWVFKVKRDASGKILK 339

Query: 192 EGLR------PQKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELK 251
              R       Q+  VD++EVFAPVAR++ VRLL+ + A   WE+H+MDVK AFLN +L+
Sbjct: 340 HKARLVAKGYVQQHGVDYDEVFAPVARMETVRLLVAMAAQEGWEIHHMDVKSAFLNGDLE 399

Query: 252 ETIYVRQ------------------------LSGFLGNDNPDKVL------------RLH 311
           E +YV Q                         +    N   D+ L             ++
Sbjct: 400 EDVYVVQPPGFVDEEHPDKVLILQKTLYGLKQAPRAWNAKLDESLVSLGFRRSVTEGAVY 459

Query: 312 KALHCEHRLIVGVYVDDLLIT-------------------RGDMKVLGD----------- 371
                + RLIVGVYVDDL+IT                     D+++L             
Sbjct: 460 TRGRGDARLIVGVYVDDLIITGAKVGEISKFKEQMRSLFSMSDLELLTYYLGMEVNQSSE 519

Query: 372 ----SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLV 409
               S+ AYA K+L+ A +   N ++ PME RL+L K      +D+T  RSIV SLRYL+
Sbjct: 520 GVTMSQSAYATKILEKARMQGCNSSQVPMENRLKLSKESKGEDIDATQLRSIVGSLRYLL 579

[Close]
BLAST of CmoCh18G005090 vs. TrEMBL
Match: Q10FX2_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g44940 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.8e-50
Identity = 164/482 (34.02%), Postives = 225/482 (46.68%), Query Frame = 1 

Query: 16  TVVYLLNRSPTRSLDEKTPHEAWYNKKPAIHHQRVFGCATYMKVARPHLAMLDPRGLKVV 75
           TVV   +     S+D  TP+EAW+ ++PA+ H RVFGC  Y+K  +P+L  LD R     
Sbjct: 181 TVVATAHSMLKASVDGITPYEAWHGRRPAVEHLRVFGCVGYVKTVKPNLRKLDDR----- 240

Query: 76  SIGYEPGARCTSSMILRGASSRVARRHLQREHLLAV----------ERCTGGMEDLVG-- 135
           ++G E    CT        +    RR+    + LA           E C    E+     
Sbjct: 241 AVGIE---FCTPPTDASRGTDEAPRRYRTVANTLATMQPILDFDYSEECLLSEEEPTSFL 300

Query: 136 RGEPPGPAARKLEEKVAELHAISTDKLNIFAEAERKPCWLKAIGR-SYEAQGPSGDEGLR 195
             E      + + E++  +   ST  L        KP  LK + +   +A G       R
Sbjct: 301 EAEKQSCCRKAMLEEMKSIENNSTWCLTNLPP-RHKPIGLKWVFKVKRDASGKILKHKAR 360

Query: 196 ------PQKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIY 255
                  Q+  VD++EVFAPVAR++ VRLL+ + A   WE+H+MDVK AFLN +L+E +Y
Sbjct: 361 LVAKGYVQQHGVDYDEVFAPVARMETVRLLVAMAAQEGWEIHHMDVKSAFLNGDLEEDVY 420

Query: 256 VRQ------------------------LSGFLGNDNPDKVL------------RLHKALH 315
           V Q                         +    N   D+ L             ++    
Sbjct: 421 VVQPPGFVDEEHPDKVLILQKTLYGLKQAPRAWNAKLDESLVSLGFRRSVTEGAVYTRGR 480

Query: 316 CEHRLIVGVYVDDLLIT-------------------RGDMKVLGD--------------- 375
            + RLIVGVYVDDL+IT                     D+++L                 
Sbjct: 481 GDARLIVGVYVDDLIITGAKVGEISKFKEQMRSLFSMSDLELLTYYLGMEVNQSSEGVTM 540

Query: 376 SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYP 409
           S+ AYA K+L+ A +   N ++ PME RL+L K      +D+T  RSIV SLRYL+NT P
Sbjct: 541 SQSAYATKILEKARMQGCNSSQVPMENRLKLSKESKGEDIDATQLRSIVGSLRYLLNTRP 600

[Close]
BLAST of CmoCh18G005090 vs. TrEMBL
Match: Q7XUD9_ORYSJ (OSJNBa0088A01.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088A01.6 PE=4 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 129/296 (43.58%), Postives = 162/296 (54.73%), Query Frame = 1 

Query: 184  QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
            Q+  +DFEEVF PVARL+ VRLLL   A   W VH+MDVK AFLN EL E +YV+Q  GF
Sbjct: 961  QQPGIDFEEVFTPVARLESVRLLLAQAAQAGWTVHHMDVKSAFLNGELAEEVYVKQPPGF 1020

Query: 244  LGNDNPDKVLRLHKALH--------------------------CEH----------RLIV 303
            +      +VLRL KAL+                          CEH          RL+V
Sbjct: 1021 VKEGREHQVLRLDKALYGLRQAPRAWNSKLEATLLSLGFRRNDCEHAVYVRGNTSARLLV 1080

Query: 304  GVYVDDLLIT----------RGDMKVLGD------------------------SRGAYAK 363
            GVYVDDL+IT          +G+MK L                          S+ AYA+
Sbjct: 1081 GVYVDDLIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYAR 1140

Query: 364  KLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVG 410
            ++L+ AG+   NP+ TPME RL+L K     +V+ T YR IV  LRYLV+T PD+A+ VG
Sbjct: 1141 RILERAGMLGCNPSATPMEQRLKLSKTSAAASVNPTWYRGIVGCLRYLVHTRPDIAFSVG 1200

[Close]
BLAST of CmoCh18G005090 vs. TrEMBL
Match: Q2QSF4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g24300 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.0e-47
Identity = 118/226 (52.21%), Postives = 143/226 (63.27%), Query Frame = 1 

Query: 184 QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
           Q+Q VDF+EVF PVARL+ V LLL + AH +WEVH+MDVK AFLN EL+E     QL  +
Sbjct: 350 QRQGVDFDEVFTPVARLESVHLLLAVAAHQAWEVHHMDVKSAFLNSELQEM----QLRTW 409

Query: 244 LGNDNPDKVLRLHKALHCEHRLIVGVYVDDLLITRGDMKVLGDSRGAYAKKLLDTAGLAD 303
                         +LH  HR             R     LG S  AYA K+L+ AGL D
Sbjct: 410 --------------SLHTCHRRQA--------TDRRGCITLGQS--AYATKILEKAGLQD 469

Query: 304 SNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVGYVSRFMEASR 363
            NP++TPME  L+L K   +  +DST Y  +V SLRYLVNT PDLAY +GYVSRFME  R
Sbjct: 470 CNPSQTPMEVCLKLSKNSDSPLMDSTFYCILVGSLRYLVNTRPDLAYAIGYVSRFMETPR 529

Query: 364 EEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELVGYNDSDMAGD 410
           EEHL AV+RI RYVAGTR W + Y  G+ +EK  L+GY+DSD+AGD
Sbjct: 530 EEHLSAVRRIQRYVAGTRNWGLTYLGGK-EEKPSLLGYSDSDLAGD 546

[Close]
BLAST of CmoCh18G005090 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-11
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1 

Query: 287 SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYP 346
           S+  YA+++L+ AG+ D  P  TP+  +L      T    D +++RSIV +L+YL  T P
Sbjct: 57  SQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRP 116

Query: 347 DLAYFVGYVSRFMEASREEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELVGYNDSDM 406
           D++Y V  V + M          +KR+LRYV GT    +         KL +  + DSD 
Sbjct: 117 DISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYI---HKNSKLNVQAFCDSDW 174

Query: 407 AG 409
           AG
Sbjct: 177 AG 174

[Close]
BLAST of CmoCh18G005090 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-09
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1 

Query: 291 YAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAY 350
           YA  LLD  GL    P+  PM+  +          VD+  YR ++  L YL  T  D+++
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISF 397

Query: 351 FVGYVSRFMEASREEHLVAVKRILRYVAGTRGWSVKY 388
            V  +S+F EA R  H  AV +IL Y+ GT G  + Y
Sbjct: 398 AVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY 434

[Close]
BLAST of CmoCh18G005090 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 135/297 (45.45%), Postives = 174/297 (58.59%), Query Frame = 1 

Query: 184  QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
            Q+Q +D+EEVFAPVAR++ VR+LL + AH SW VH+MDVK AFLN +L E +YV+Q  GF
Sbjct: 1016 QRQGIDYEEVFAPVARIESVRVLLAVAAHRSWSVHHMDVKSAFLNGDLAEEVYVQQPPGF 1075

Query: 244  LGNDNPDKVLRLHKALH--------------------------CEH----------RLIV 303
            +   +  KVL+LHKAL+                          CEH          RL+V
Sbjct: 1076 VAAGHERKVLKLHKALYGLKQAPRAWNSKLDSSLLMLGFARSECEHGLYTRSDGEKRLVV 1135

Query: 304  GVYVDDLLITRG-------------------DMKVLGDSRG---------------AYAK 363
            G+YVDDL+IT G                   D+ VL    G               AYAK
Sbjct: 1136 GIYVDDLIITGGSTEVINTFKTEMKTLFRMSDLGVLSYYLGIEVRQGRRGIELLQAAYAK 1195

Query: 364  KLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVG 411
            K+L+ AG+   NP  TPMEARL+L K  T+ AVD+T YRS++ SLRYL+NT PD+A+ VG
Sbjct: 1196 KILEKAGMGTCNPCATPMEARLKLSKQSTSPAVDATEYRSLIGSLRYLMNTRPDMAFAVG 1255

[Close]
BLAST of CmoCh18G005090 vs. NCBI nr
Match: gi|31712106|gb|AAP68410.1| (putative gag/pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 227.3 bits (578), Expect = 5.1e-56
Identity = 171/486 (35.19%), Postives = 234/486 (48.15%), Query Frame = 1 

Query: 12  EAEMTVVYLLNRSPTRSLDEKTPHEAWYNKKPAIHHQRVFGCATYMKVARPHLAMLDPRG 71
           EA +  +YLLNRSPT+S+D  TP+EAW+ ++PA+ H RVFGC  Y+K  +P+L  LD R 
Sbjct: 160 EAVVAAIYLLNRSPTKSVDGITPYEAWHGRRPAVEHLRVFGCVGYVKTVKPNLRKLDDR- 219

Query: 72  LKVVSIGYEPGARCTSSMILRGASSRVARRHLQREHLLAV----------ERCTGGMEDL 131
               ++G E    CT        +    RR+    + LA           E C    E+ 
Sbjct: 220 ----AVGIE---FCTPPTDASRGTDEAPRRYRTVANTLATMQPILDFDYSEECLLSEEEP 279

Query: 132 VG--RGEPPGPAARKLEEKVAELHAISTDKLNIFAEAERKPCWLKAIGR-SYEAQGPSGD 191
                 E      + + E++  +   ST  L        KP  LK + +   +A G    
Sbjct: 280 TSFLEAEKQSCCRKAMLEEMKSIENNSTWCLTNLPP-RHKPIGLKWVFKVKRDASGKILK 339

Query: 192 EGLR------PQKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELK 251
              R       Q+  VD++EVFAPVAR++ VRLL+ + A   WE+H+MDVK AFLN +L+
Sbjct: 340 HKARLVAKGYVQQHGVDYDEVFAPVARMETVRLLVAMAAQEGWEIHHMDVKSAFLNGDLE 399

Query: 252 ETIYVRQ------------------------LSGFLGNDNPDKVL------------RLH 311
           E +YV Q                         +    N   D+ L             ++
Sbjct: 400 EDVYVVQPPGFVDEEHPDKVLILQKTLYGLKQAPRAWNAKLDESLVSLGFRRSVTEGAVY 459

Query: 312 KALHCEHRLIVGVYVDDLLIT-------------------RGDMKVLGD----------- 371
                + RLIVGVYVDDL+IT                     D+++L             
Sbjct: 460 TRGRGDARLIVGVYVDDLIITGAKVGEISKFKEQMRSLFSMSDLELLTYYLGMEVNQSSE 519

Query: 372 ----SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLV 409
               S+ AYA K+L+ A +   N ++ PME RL+L K      +D+T  RSIV SLRYL+
Sbjct: 520 GVTMSQSAYATKILEKARMQGCNSSQVPMENRLKLSKESKGEDIDATQLRSIVGSLRYLL 579

[Close]
BLAST of CmoCh18G005090 vs. NCBI nr
Match: gi|108710140|gb|ABF97935.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 207.2 bits (526), Expect = 5.4e-50
Identity = 164/482 (34.02%), Postives = 225/482 (46.68%), Query Frame = 1 

Query: 16  TVVYLLNRSPTRSLDEKTPHEAWYNKKPAIHHQRVFGCATYMKVARPHLAMLDPRGLKVV 75
           TVV   +     S+D  TP+EAW+ ++PA+ H RVFGC  Y+K  +P+L  LD R     
Sbjct: 181 TVVATAHSMLKASVDGITPYEAWHGRRPAVEHLRVFGCVGYVKTVKPNLRKLDDR----- 240

Query: 76  SIGYEPGARCTSSMILRGASSRVARRHLQREHLLAV----------ERCTGGMEDLVG-- 135
           ++G E    CT        +    RR+    + LA           E C    E+     
Sbjct: 241 AVGIE---FCTPPTDASRGTDEAPRRYRTVANTLATMQPILDFDYSEECLLSEEEPTSFL 300

Query: 136 RGEPPGPAARKLEEKVAELHAISTDKLNIFAEAERKPCWLKAIGR-SYEAQGPSGDEGLR 195
             E      + + E++  +   ST  L        KP  LK + +   +A G       R
Sbjct: 301 EAEKQSCCRKAMLEEMKSIENNSTWCLTNLPP-RHKPIGLKWVFKVKRDASGKILKHKAR 360

Query: 196 ------PQKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIY 255
                  Q+  VD++EVFAPVAR++ VRLL+ + A   WE+H+MDVK AFLN +L+E +Y
Sbjct: 361 LVAKGYVQQHGVDYDEVFAPVARMETVRLLVAMAAQEGWEIHHMDVKSAFLNGDLEEDVY 420

Query: 256 VRQ------------------------LSGFLGNDNPDKVL------------RLHKALH 315
           V Q                         +    N   D+ L             ++    
Sbjct: 421 VVQPPGFVDEEHPDKVLILQKTLYGLKQAPRAWNAKLDESLVSLGFRRSVTEGAVYTRGR 480

Query: 316 CEHRLIVGVYVDDLLIT-------------------RGDMKVLGD--------------- 375
            + RLIVGVYVDDL+IT                     D+++L                 
Sbjct: 481 GDARLIVGVYVDDLIITGAKVGEISKFKEQMRSLFSMSDLELLTYYLGMEVNQSSEGVTM 540

Query: 376 SRGAYAKKLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYP 409
           S+ AYA K+L+ A +   N ++ PME RL+L K      +D+T  RSIV SLRYL+NT P
Sbjct: 541 SQSAYATKILEKARMQGCNSSQVPMENRLKLSKESKGEDIDATQLRSIVGSLRYLLNTRP 600

[Close]
BLAST of CmoCh18G005090 vs. NCBI nr
Match: gi|38346799|emb|CAD41367.2| (OSJNBa0088A01.6 [Oryza sativa Japonica Group])

HSP 1 Score: 206.8 bits (525), Expect = 7.1e-50
Identity = 129/296 (43.58%), Postives = 162/296 (54.73%), Query Frame = 1 

Query: 184  QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
            Q+  +DFEEVF PVARL+ VRLLL   A   W VH+MDVK AFLN EL E +YV+Q  GF
Sbjct: 961  QQPGIDFEEVFTPVARLESVRLLLAQAAQAGWTVHHMDVKSAFLNGELAEEVYVKQPPGF 1020

Query: 244  LGNDNPDKVLRLHKALH--------------------------CEH----------RLIV 303
            +      +VLRL KAL+                          CEH          RL+V
Sbjct: 1021 VKEGREHQVLRLDKALYGLRQAPRAWNSKLEATLLSLGFRRNDCEHAVYVRGNTSARLLV 1080

Query: 304  GVYVDDLLIT----------RGDMKVLGD------------------------SRGAYAK 363
            GVYVDDL+IT          +G+MK L                          S+ AYA+
Sbjct: 1081 GVYVDDLIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYAR 1140

Query: 364  KLLDTAGLADSNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVG 410
            ++L+ AG+   NP+ TPME RL+L K     +V+ T YR IV  LRYLV+T PD+A+ VG
Sbjct: 1141 RILERAGMLGCNPSATPMEQRLKLSKTSAAASVNPTWYRGIVGCLRYLVHTRPDIAFSVG 1200

[Close]
BLAST of CmoCh18G005090 vs. NCBI nr
Match: gi|77554870|gb|ABA97666.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-47
Identity = 118/226 (52.21%), Postives = 143/226 (63.27%), Query Frame = 1 

Query: 184 QKQVVDFEEVFAPVARLKFVRLLLEITAHHSWEVHYMDVKFAFLNRELKETIYVRQLSGF 243
           Q+Q VDF+EVF PVARL+ V LLL + AH +WEVH+MDVK AFLN EL+E     QL  +
Sbjct: 350 QRQGVDFDEVFTPVARLESVHLLLAVAAHQAWEVHHMDVKSAFLNSELQEM----QLRTW 409

Query: 244 LGNDNPDKVLRLHKALHCEHRLIVGVYVDDLLITRGDMKVLGDSRGAYAKKLLDTAGLAD 303
                         +LH  HR             R     LG S  AYA K+L+ AGL D
Sbjct: 410 --------------SLHTCHRRQA--------TDRRGCITLGQS--AYATKILEKAGLQD 469

Query: 304 SNPTRTPMEARLQLRKADTTMAVDSTNYRSIVRSLRYLVNTYPDLAYFVGYVSRFMEASR 363
            NP++TPME  L+L K   +  +DST Y  +V SLRYLVNT PDLAY +GYVSRFME  R
Sbjct: 470 CNPSQTPMEVCLKLSKNSDSPLMDSTFYCILVGSLRYLVNTRPDLAYAIGYVSRFMETPR 529

Query: 364 EEHLVAVKRILRYVAGTRGWSVKYCVGRGKEKLELVGYNDSDMAGD 410
           EEHL AV+RI RYVAGTR W + Y  G+ +EK  L+GY+DSD+AGD
Sbjct: 530 EEHLSAVRRIQRYVAGTRNWGLTYLGGK-EEKPSLLGYSDSDLAGD 546

The following BLAST results are available for this feature:
BLAST of CmoCh18G005090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.1e-1338.93Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME6.9e-1343.21Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH1.2e-0934.43Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST1.3e-0630.11Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
BLAST of CmoCh18G005090 vs. TrEMBL
Match NameE-valueIdentityDescription
Q0J5Y3_ORYSJ1.1e-5745.45Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1[more]
Q7XZY2_ORYSJ3.5e-5635.19Putative gag/pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0093M23.16... [more]
Q10FX2_ORYSJ3.8e-5034.02Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q7XUD9_ORYSJ5.0e-5043.58OSJNBa0088A01.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088A01.6 PE=4 ... [more]
Q2QSF4_ORYSJ3.0e-4752.21Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
BLAST of CmoCh18G005090 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00810.16.9e-1134.43ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
AT4G23160.18.4e-0936.08 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of CmoCh18G005090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|113623687|dbj|BAF23632.1|1.6e-5745.45Os08g0389500 [Oryza sativa Japonica Group][more]
gi|31712106|gb|AAP68410.1|5.1e-5635.19putative gag/pol polyprotein [Oryza sativa Japonica Group][more]
gi|108710140|gb|ABF97935.1|5.4e-5034.02retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|38346799|emb|CAD41367.2|7.1e-5043.58OSJNBa0088A01.6 [Oryza sativa Japonica Group][more]
gi|77554870|gb|ABA97666.1|4.3e-4752.21retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G005090.1CmoCh18G005090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 6..46
score: 7.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 6..51
score: 3.5
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 184..260
score: 9.7
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..410
score: 1.4E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 3..410
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G005090Cucurbita moschata (Rifu)cmocmoB170
CmoCh18G005090Cucurbita moschata (Rifu)cmocmoB350
CmoCh18G005090Cucumber (Gy14) v1cgycmoB0035
CmoCh18G005090Cucumber (Gy14) v1cgycmoB0479
CmoCh18G005090Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G005090Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G005090Cucurbita maxima (Rimu)cmacmoB850
CmoCh18G005090Wild cucumber (PI 183967)cmocpiB384
CmoCh18G005090Wild cucumber (PI 183967)cmocpiB418
CmoCh18G005090Cucumber (Chinese Long) v2cmocuB381
CmoCh18G005090Cucumber (Chinese Long) v2cmocuB414
CmoCh18G005090Melon (DHL92) v3.5.1cmomeB356
CmoCh18G005090Melon (DHL92) v3.5.1cmomeB374
CmoCh18G005090Watermelon (Charleston Gray)cmowcgB339
CmoCh18G005090Watermelon (97103) v1cmowmB375
CmoCh18G005090Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G005090Cucurbita pepo (Zucchini)cmocpeB402
CmoCh18G005090Cucurbita pepo (Zucchini)cmocpeB403
CmoCh18G005090Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G005090Cucumber (Gy14) v2cgybcmoB083
CmoCh18G005090Cucumber (Gy14) v2cgybcmoB751
CmoCh18G005090Melon (DHL92) v3.6.1cmomedB408
CmoCh18G005090Melon (DHL92) v3.6.1cmomedB430
CmoCh18G005090Silver-seed gourdcarcmoB0537
CmoCh18G005090Silver-seed gourdcarcmoB0606
CmoCh18G005090Cucumber (Chinese Long) v3cmocucB0461
CmoCh18G005090Cucumber (Chinese Long) v3cmocucB0495
CmoCh18G005090Watermelon (97103) v2cmowmbB382
CmoCh18G005090Wax gourdcmowgoB0513
CmoCh18G005090Wax gourdcmowgoB0530