CmoCh18G004200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G004200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Senescence regulator
Location	Cmo_Chr18 : 2764933 .. 2765367 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAGAATTTCAGGAATCCGAAGTAATTTTCTCCGATCGCGACCGCTGCCGTTACCTCCACCGCGAAGACGGCGGCGGATTCGGCGGTGAGGATCACTTAAACTTCAACTGCCGCCGCGGAATGGCTGCGGCGCCGCGAAGTTGTAAGTATCATAACCGGACGGTGCGCGAGGGCGGATGGCAATCGAACAAGGAAATGGCGAGCTCACTTCCGGTAGGAATTCCGGATATAATCGGCCGGAGGATGGTGGAGGAAGACGATGAGATGGATGAAGAGGAAATGGTTCCGCCGCACGTGGTGGCGGAGAGGCGAGTGGCTAGAAAAATGGCGTTCTCTGTTTGTACTGGTAATGGAAGAACATTGAAGGGACGAGACTTGAGCCGAGTACGGAATTCAATACTTCGGATGACCGGATTCTTAGAAACGTGA

mRNA sequence

ATGGCCGAAGAATTTCAGGAATCCGAAGTAATTTTCTCCGATCGCGACCGCTGCCGTTACCTCCACCGCGAAGACGGCGGCGGATTCGGCGGTGAGGATCACTTAAACTTCAACTGCCGCCGCGGAATGGCTGCGGCGCCGCGAAGTTGTAAGTATCATAACCGGACGGTGCGCGAGGGCGGATGGCAATCGAACAAGGAAATGGCGAGCTCACTTCCGGTAGGAATTCCGGATATAATCGGCCGGAGGATGGTGGAGGAAGACGATGAGATGGATGAAGAGGAAATGGTTCCGCCGCACGTGGTGGCGGAGAGGCGAGTGGCTAGAAAAATGGCGTTCTCTGTTTGTACTGGTAATGGAAGAACATTGAAGGGACGAGACTTGAGCCGAGTACGGAATTCAATACTTCGGATGACCGGATTCTTAGAAACGTGA

Coding sequence (CDS)

ATGGCCGAAGAATTTCAGGAATCCGAAGTAATTTTCTCCGATCGCGACCGCTGCCGTTACCTCCACCGCGAAGACGGCGGCGGATTCGGCGGTGAGGATCACTTAAACTTCAACTGCCGCCGCGGAATGGCTGCGGCGCCGCGAAGTTGTAAGTATCATAACCGGACGGTGCGCGAGGGCGGATGGCAATCGAACAAGGAAATGGCGAGCTCACTTCCGGTAGGAATTCCGGATATAATCGGCCGGAGGATGGTGGAGGAAGACGATGAGATGGATGAAGAGGAAATGGTTCCGCCGCACGTGGTGGCGGAGAGGCGAGTGGCTAGAAAAATGGCGTTCTCTGTTTGTACTGGTAATGGAAGAACATTGAAGGGACGAGACTTGAGCCGAGTACGGAATTCAATACTTCGGATGACCGGATTCTTAGAAACGTGA

Homology

[Close]

BLAST of CmoCh18G004200 vs. TrEMBL
Match: A5Y727_CUCME (Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.1e-44
Identity = 101/147 (68.71%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MAEEFQESEVIFSD-RDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVRE 60
           MAEEFQESEVIFSD RD  RYL R+D      +D  NFN RRG+  AP   KYH+RT   
Sbjct: 1   MAEEFQESEVIFSDLRDHTRYLRRDD------DDFFNFNSRRGIILAPPRTKYHHRTTMR 60

Query: 61  GGWQ--SNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCT 120
            G    S KE+A SLPV IP+    R  EEDD+MDEEE++PPH+V ERRVARKMAFSVCT
Sbjct: 61  DGCVRLSKKEIARSLPVRIPERSFHRTAEEDDDMDEEEIIPPHLVTERRVARKMAFSVCT 120

Query: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 145
           GNGRTLKGRDLSRVRNSILRMTGFLET
Sbjct: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 141

[Close]

BLAST of CmoCh18G004200 vs. TrEMBL
Match: B0F6T1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G464560 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.5e-42
Identity = 94/146 (64.38%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 1   MAEEFQESEVIFSD-RDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVRE 60
           MA+EFQES++ FSD RD CR+L R+D   F    + N N RRG+ A PR+ KYH+RT+R+
Sbjct: 1   MADEFQESDLFFSDPRDHCRHLRRDDDDFFNFNFNSNSNSRRGVLAPPRT-KYHHRTMRD 60

Query: 61  GGWQ-SNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCTG 120
              + S KE++ SLPV IP+    R +EEDD+MDE+E++PPH+VAERRVARKMAFSVCTG
Sbjct: 61  ACVRLSKKEISRSLPVRIPERNLHRTLEEDDDMDEDEIIPPHLVAERRVARKMAFSVCTG 120

Query: 121 NGRTLKGRDLSRVRNSILRMTGFLET 145
           NGRTLKGRDLSRVRNS+LR+TGFLET
Sbjct: 121 NGRTLKGRDLSRVRNSVLRLTGFLET 145

[Close]

BLAST of CmoCh18G004200 vs. TrEMBL
Match: A0A0D2VB71_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G163800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-25
Identity = 71/146 (48.63%), Postives = 92/146 (63.01%), Query Frame = 1


Query: 3   EEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFN--CRRGMAAAPRSCKYHNRTVREG 62
           EEFQESEV+FSD +   Y   ++      +++ ++    +    +     K +N T ++ 
Sbjct: 4   EEFQESEVVFSDHNSNHYGTHDEDAAVNDDEYFDYRGFSKNSRVSRNYKSKKNNSTTKKN 63

Query: 63  GWQSNKEMASSLPVGIPDIIGRRMVE---EDDEMDEEEMVPPHVVAERRVARKMAFSVCT 122
              +NK  ASSLPV IP   G  +     E DE D+  MVPPHV+  RR+A KMAFSVCT
Sbjct: 64  ---NNKMAASSLPVNIPRQHGATVFHCDGEADEYDDGGMVPPHVILGRRIAGKMAFSVCT 123

Query: 123 GNGRTLKGRDLSRVRNSILRMTGFLE 144
           GNGRTLKGRDLS+VRNS+LRMTGFLE
Sbjct: 124 GNGRTLKGRDLSQVRNSVLRMTGFLE 146

[Close]

BLAST of CmoCh18G004200 vs. TrEMBL
Match: A0A0D2VHP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G035200 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 81/153 (52.94%), Postives = 95/153 (62.09%), Query Frame = 1


Query: 3   EEFQESEVIFSDR-DRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREGG 62
           EEFQESEVIFSD        H ED     G     FN R G +    +    N T R+  
Sbjct: 4   EEFQESEVIFSDNISNIHGSHDEDAAVIDGGC---FNYRGGFS----NKSDENTTKRKKN 63

Query: 63  WQSNKEM--ASSLPVGIPDII----GRRMV-----EEDDEMDEEEMVPPHVVAERRVARK 122
            +  K++  ASSLPV IP  +    GR        E++D+M+E EMVPPHV+  RR+A K
Sbjct: 64  KKKKKKVVAASSLPVNIPCGVFHYGGRGGAYDFEEEDEDDMEEGEMVPPHVILGRRIAGK 123

Query: 123 MAFSVCTGNGRTLKGRDLSRVRNSILRMTGFLE 144
           MAFSVCTGNGRTLKGRDLS+VRNSILRMTGFLE
Sbjct: 124 MAFSVCTGNGRTLKGRDLSQVRNSILRMTGFLE 149

[Close]

BLAST of CmoCh18G004200 vs. TrEMBL
Match: A0A061GFC2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029589 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-24
Identity = 76/148 (51.35%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 3   EEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREGGW 62
           EEFQESEVIFSD       H ED  G    D+  F+    + A   + K    T +    
Sbjct: 4   EEFQESEVIFSDNSNHYSTHDEDDDGC--LDYRGFSKNDRVPARNSNNKSKRNTKK---- 63

Query: 63  QSNKEMASSLPVGIPDII-------GRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSV 122
              K++ASSLPV IP          G     E+++ DE E+VPPHV+  RR+A KMAFSV
Sbjct: 64  ---KKIASSLPVNIPRHCHGTVFHCGEADDFEEEQDDEGEIVPPHVILGRRIAGKMAFSV 123

Query: 123 CTGNGRTLKGRDLSRVRNSILRMTGFLE 144
           CTGNGRTLKGRDLS+VRNSILRMTGFLE
Sbjct: 124 CTGNGRTLKGRDLSQVRNSILRMTGFLE 142

[Close]

BLAST of CmoCh18G004200 vs. TAIR10
Match: AT2G34340.1 (AT2G34340.1 Protein of unknown function, DUF584)

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-25
Identity = 74/152 (48.68%), Postives = 91/152 (59.87%), Query Frame = 1


Query: 1   MAEEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREG 60
           MAEEF ESEV+FSD      LH+E+     G D      RR             RT  E 
Sbjct: 1   MAEEFDESEVVFSD-GLSSVLHKENENRLFGSDMERKKTRR-----------IKRTTTE- 60

Query: 61  GWQSNKEMASSLPVGIPDIIGRRMV-EEDDEMDEEE-------MVPPHVVAERRV-ARKM 120
                  ++SSLPV IP+ I RR V +E+DE  EEE       M+PPH++  RR+   +M
Sbjct: 61  ----KASLSSSLPVSIPENIFRRYVGKEEDEYSEEEYSEGGGEMIPPHIMIGRRIQGGQM 120

Query: 121 AFSVCTGNGRTLKGRDLSRVRNSILRMTGFLE 144
           AFSVC+G+GRTLKGRDLSRVRNS+LR+TGFLE
Sbjct: 121 AFSVCSGSGRTLKGRDLSRVRNSVLRLTGFLE 135

[Close]

BLAST of CmoCh18G004200 vs. TAIR10
Match: AT1G29640.1 (AT1G29640.1 Protein of unknown function, DUF584)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-20
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = 1


Query: 1   MAEEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREG 60
           M+EEF ESE+IFSD +      REDG        ++F           S +  N++ R  
Sbjct: 1   MSEEFDESEIIFSD-NYFPIRRREDGNEKENNRPVDFR--------ENSERVWNKSSRRS 60

Query: 61  GW----QSNKEMASSLPVGIPDIIGRRMVEEDDEMDEE---EMVPPHVVAERRV-ARKMA 120
                  +    +SSLPV IP    RR   E++  D++   +M+PPH++  RR+   +MA
Sbjct: 61  KTTPLPSAVTAFSSSLPVNIPM---RRYSTEEEYSDDDGGRKMIPPHLIVGRRMEGGQMA 120

Query: 121 FSVCTGNGRTLKGRDLSRVRNSILRMTGFLE 144
           FSVCTGNGRTLKGRDLSRVRNS+L++TGFLE
Sbjct: 121 FSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139

[Close]

BLAST of CmoCh18G004200 vs. TAIR10
Match: AT5G45630.1 (AT5G45630.1 Protein of unknown function, DUF584)

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-17
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 1   MAEEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCK-YHNRTVRE 60
           M+EEFQES++IFSD+ +                         ++ + R  K Y++R   +
Sbjct: 1   MSEEFQESDIIFSDQSK-------------------------ISTSSRYTKLYNSRNDEK 60

Query: 61  GGWQSNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCTGN 120
            G + ++    + PV IP     R +E D   +E++  PPHV+ ERR+  ++AFS C   
Sbjct: 61  KGTRRHETAEKTSPVRIPTN-NFRCLEWDTTEEEDDKTPPHVIIERRMKEQIAFSAC--- 113

Query: 121 GRTLKGRDLSRVRNSILRMTGFLE 144
             TLKGRDLSR RNS+LRMTGFLE
Sbjct: 121 --TLKGRDLSRHRNSVLRMTGFLE 113

[Close]

BLAST of CmoCh18G004200 vs. TAIR10
Match: AT4G18980.1 (AT4G18980.1 AtS40-3)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 61/144 (42.36%), Postives = 71/144 (49.31%), Query Frame = 1


Query: 1   MAEEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREG 60
           M+EEFQESEVIFSD    R  ++          H N N  R                   
Sbjct: 1   MSEEFQESEVIFSDESFTRKDNKIS--------HNNENYER------------------- 60

Query: 61  GWQSNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAE-RRVARKMAFSVCTGN 120
             +S ++   S PV IP     R  EE     E EM PPHV+ E RR   +MAFS CT  
Sbjct: 61  --KSTEKDKISSPVRIPSRTTIRYTEE-----EGEMTPPHVIIEKRRTEAQMAFSFCT-- 105

Query: 121 GRTLKGRDLSRVRNSILRMTGFLE 144
              LKGRDLSR RN++LRMTGFLE
Sbjct: 121 ---LKGRDLSRHRNTVLRMTGFLE 105

[Close]

BLAST of CmoCh18G004200 vs. TAIR10
Match: AT4G21970.1 (AT4G21970.1 Protein of unknown function, DUF584)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12
Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = 1


Query: 3   EEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREGGW 62
           EEFQE EV         +    +    G E  ++ +     A++  S +Y    + +G  
Sbjct: 5   EEFQEEEV---------WSVLRESETQGPEMKMSKSNNLFSASSSSSARY----IPKGNE 64

Query: 63  QSNKEMASSLPVGIPD---IIGRRMVEED--------DEMDEEEMVPPHVVAERRVARKM 122
            S     SS P+ IPD   + G               D+ DE  MVPPH +  +R+AR  
Sbjct: 65  VSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGSMVPPHELVAKRLARTQ 124

Query: 123 --AFSVCTGNGRTLKGRDLSRVRNSILRMTGFLET 145
             +FS+C G GRTLKGRDLS+ RN++L  TGFLE+
Sbjct: 125 ISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLES 146

[Close]

BLAST of CmoCh18G004200 vs. NCBI nr
Match: gi|148270936|gb|ABQ53634.1| (unknown [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44
Identity = 101/147 (68.71%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MAEEFQESEVIFSD-RDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVRE 60
           MAEEFQESEVIFSD RD  RYL R+D      +D  NFN RRG+  AP   KYH+RT   
Sbjct: 1   MAEEFQESEVIFSDLRDHTRYLRRDD------DDFFNFNSRRGIILAPPRTKYHHRTTMR 60

Query: 61  GGWQ--SNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCT 120
            G    S KE+A SLPV IP+    R  EEDD+MDEEE++PPH+V ERRVARKMAFSVCT
Sbjct: 61  DGCVRLSKKEIARSLPVRIPERSFHRTAEEDDDMDEEEIIPPHLVTERRVARKMAFSVCT 120

Query: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 145
           GNGRTLKGRDLSRVRNSILRMTGFLET
Sbjct: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 141

[Close]

BLAST of CmoCh18G004200 vs. NCBI nr
Match: gi|659068301|ref|XP_008443750.1| (PREDICTED: uncharacterized protein LOC103487260 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 101/147 (68.71%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MAEEFQESEVIFSD-RDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVRE 60
           MAEEFQESEVIFSD RD  RYL R+D      +D  NFN RRG+  AP   KYH+RT   
Sbjct: 1   MAEEFQESEVIFSDLRDHTRYLRRDD------DDFFNFNSRRGIILAPPRTKYHHRTTMR 60

Query: 61  GGWQ--SNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCT 120
            G    S KE+A SLPV IP+    R  EEDD+MDEEE++PPH+V ERRVARKMAFSVCT
Sbjct: 61  DGCVRLSKKEIARSLPVRIPERSLHRTAEEDDDMDEEEIIPPHLVTERRVARKMAFSVCT 120

Query: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 145
           GNGRTLKGRDLSRVRNSILRMTGFLET
Sbjct: 121 GNGRTLKGRDLSRVRNSILRMTGFLET 141

[Close]

BLAST of CmoCh18G004200 vs. NCBI nr
Match: gi|449459384|ref|XP_004147426.1| (PREDICTED: uncharacterized protein LOC101213935 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 94/146 (64.38%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 1   MAEEFQESEVIFSD-RDRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVRE 60
           MA+EFQES++ FSD RD CR+L R+D   F    + N N RRG+ A PR+ KYH+RT+R+
Sbjct: 1   MADEFQESDLFFSDPRDHCRHLRRDDDDFFNFNFNSNSNSRRGVLAPPRT-KYHHRTMRD 60

Query: 61  GGWQ-SNKEMASSLPVGIPDIIGRRMVEEDDEMDEEEMVPPHVVAERRVARKMAFSVCTG 120
              + S KE++ SLPV IP+    R +EEDD+MDE+E++PPH+VAERRVARKMAFSVCTG
Sbjct: 61  ACVRLSKKEISRSLPVRIPERNLHRTLEEDDDMDEDEIIPPHLVAERRVARKMAFSVCTG 120

Query: 121 NGRTLKGRDLSRVRNSILRMTGFLET 145
           NGRTLKGRDLSRVRNS+LR+TGFLET
Sbjct: 121 NGRTLKGRDLSRVRNSVLRLTGFLET 145

[Close]

BLAST of CmoCh18G004200 vs. NCBI nr
Match: gi|823232653|ref|XP_012449020.1| (PREDICTED: uncharacterized protein LOC105772259 [Gossypium raimondii])

HSP 1 Score: 123.6 bits (309), Expect = 2.7e-25
Identity = 71/146 (48.63%), Postives = 92/146 (63.01%), Query Frame = 1


Query: 3   EEFQESEVIFSDRDRCRYLHREDGGGFGGEDHLNFN--CRRGMAAAPRSCKYHNRTVREG 62
           EEFQESEV+FSD +   Y   ++      +++ ++    +    +     K +N T ++ 
Sbjct: 4   EEFQESEVVFSDHNSNHYGTHDEDAAVNDDEYFDYRGFSKNSRVSRNYKSKKNNSTTKKN 63

Query: 63  GWQSNKEMASSLPVGIPDIIGRRMVE---EDDEMDEEEMVPPHVVAERRVARKMAFSVCT 122
              +NK  ASSLPV IP   G  +     E DE D+  MVPPHV+  RR+A KMAFSVCT
Sbjct: 64  ---NNKMAASSLPVNIPRQHGATVFHCDGEADEYDDGGMVPPHVILGRRIAGKMAFSVCT 123

Query: 123 GNGRTLKGRDLSRVRNSILRMTGFLE 144
           GNGRTLKGRDLS+VRNS+LRMTGFLE
Sbjct: 124 GNGRTLKGRDLSQVRNSVLRMTGFLE 146

[Close]

BLAST of CmoCh18G004200 vs. NCBI nr
Match: gi|823250600|ref|XP_012457883.1| (PREDICTED: uncharacterized protein LOC105778681 [Gossypium raimondii])

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 81/153 (52.94%), Postives = 95/153 (62.09%), Query Frame = 1


Query: 3   EEFQESEVIFSDR-DRCRYLHREDGGGFGGEDHLNFNCRRGMAAAPRSCKYHNRTVREGG 62
           EEFQESEVIFSD        H ED     G     FN R G +    +    N T R+  
Sbjct: 4   EEFQESEVIFSDNISNIHGSHDEDAAVIDGGC---FNYRGGFS----NKSDENTTKRKKN 63

Query: 63  WQSNKEM--ASSLPVGIPDII----GRRMV-----EEDDEMDEEEMVPPHVVAERRVARK 122
            +  K++  ASSLPV IP  +    GR        E++D+M+E EMVPPHV+  RR+A K
Sbjct: 64  KKKKKKVVAASSLPVNIPCGVFHYGGRGGAYDFEEEDEDDMEEGEMVPPHVILGRRIAGK 123

Query: 123 MAFSVCTGNGRTLKGRDLSRVRNSILRMTGFLE 144
           MAFSVCTGNGRTLKGRDLS+VRNSILRMTGFLE
Sbjct: 124 MAFSVCTGNGRTLKGRDLSQVRNSILRMTGFLE 149

The following BLAST results are available for this feature:

BLAST of CmoCh18G004200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh18G004200 vs. TrEMBL


Match Name	E-value	Identity	Description
A5Y727_CUCME	4.1e-44	68.71	Putative uncharacterized protein OS=Cucumis melo PE=4 SV=1	[more]
B0F6T1_CUCSA	8.5e-42	64.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G464560 PE=4 SV=1	[more]
A0A0D2VB71_GOSRA	1.9e-25	48.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G163800 PE=4 SV=1	[more]
A0A0D2VHP1_GOSRA	3.6e-24	52.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G035200 PE=4 SV=1	[more]
A0A061GFC2_THECC	6.2e-24	51.35	Uncharacterized protein OS=Theobroma cacao GN=TCM_029589 PE=4 SV=1	[more]

BLAST of CmoCh18G004200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34340.1	8.5e-25	48.68	Protein of unknown function, DUF584	[more]
AT1G29640.1	2.2e-20	43.71	Protein of unknown function, DUF584	[more]
AT5G45630.1	6.5e-17	38.19	Protein of unknown function, DUF584	[more]
AT4G18980.1	1.0e-14	42.36	AtS40-3	[more]
AT4G21970.1	3.7e-12	34.84	Protein of unknown function, DUF584	[more]

BLAST of CmoCh18G004200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|148270936\|gb\|ABQ53634.1\|	5.9e-44	68.71	unknown [Cucumis melo]	[more]
gi\|659068301\|ref\|XP_008443750.1\|	7.7e-44	68.71	PREDICTED: uncharacterized protein LOC103487260 [Cucumis melo]	[more]
gi\|449459384\|ref\|XP_004147426.1\|	1.2e-41	64.38	PREDICTED: uncharacterized protein LOC101213935 [Cucumis sativus]	[more]
gi\|823232653\|ref\|XP_012449020.1\|	2.7e-25	48.63	PREDICTED: uncharacterized protein LOC105772259 [Gossypium raimondii]	[more]
gi\|823250600\|ref\|XP_012457883.1\|	5.2e-24	52.94	PREDICTED: uncharacterized protein LOC105778681 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007608	Senescence_reg_S40

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G004200.1	CmoCh18G004200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 47..143 score: 8.8
None	No IPR available	PANTHER	PTHR33083	FAMILY NOT NAMED	coord: 1..144 score: 1.1
None	No IPR available	PANTHER	PTHR33083:SF7	SUBFAMILY NOT NAMED	coord: 1..144 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G004200	Cucsa.047310	Cucumber (Gy14) v1	cgycmoB0034
CmoCh18G004200	Cucsa.212650	Cucumber (Gy14) v1	cgycmoB0616
CmoCh18G004200	CmaCh13G005720	Cucurbita maxima (Rimu)	cmacmoB223
CmoCh18G004200	CmaCh18G004440	Cucurbita maxima (Rimu)	cmacmoB407
CmoCh18G004200	CmaCh03G013570	Cucurbita maxima (Rimu)	cmacmoB644
CmoCh18G004200	Cla009728	Watermelon (97103) v1	cmowmB372
CmoCh18G004200	Cla019625	Watermelon (97103) v1	cmowmB362
CmoCh18G004200	Csa1G464560	Cucumber (Chinese Long) v2	cmocuB386
CmoCh18G004200	Csa6G520440	Cucumber (Chinese Long) v2	cmocuB412
CmoCh18G004200	MELO3C002696	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G004200	MELO3C007178	Melon (DHL92) v3.5.1	cmomeB373
CmoCh18G004200	ClCG01G024130	Watermelon (Charleston Gray)	cmowcgB339
CmoCh18G004200	ClCG03G007260	Watermelon (Charleston Gray)	cmowcgB352
CmoCh18G004200	CSPI01G21660	Wild cucumber (PI 183967)	cmocpiB389
CmoCh18G004200	CSPI06G35780	Wild cucumber (PI 183967)	cmocpiB418
CmoCh18G004200	Lsi02G008500	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G004200	Lsi01G002020	Bottle gourd (USVL1VR-Ls)	cmolsiB354
CmoCh18G004200	Cp4.1LG09g07920	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G004200	Cp4.1LG10g05510	Cucurbita pepo (Zucchini)	cmocpeB379
CmoCh18G004200	Cp4.1LG19g06500	Cucurbita pepo (Zucchini)	cmocpeB402
CmoCh18G004200	Cp4.1LG20g04860	Cucurbita pepo (Zucchini)	cmocpeB403
CmoCh18G004200	MELO3C002696.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G004200	MELO3C007178.2	Melon (DHL92) v3.6.1	cmomedB429
CmoCh18G004200	CsaV3_1G032860	Cucumber (Chinese Long) v3	cmocucB0464
CmoCh18G004200	Cla97C03G058520	Watermelon (97103) v2	cmowmbB396
CmoCh18G004200	Cla97C01G024050	Watermelon (97103) v2	cmowmbB381
CmoCh18G004200	Bhi08G001748	Wax gourd	cmowgoB0529
CmoCh18G004200	Bhi03G000014	Wax gourd	cmowgoB0512
CmoCh18G004200	CsGy6G035240	Cucumber (Gy14) v2	cgybcmoB749
CmoCh18G004200	CsGy1G021320	Cucumber (Gy14) v2	cgybcmoB089
CmoCh18G004200	Carg15375	Silver-seed gourd	carcmoB0741
CmoCh18G004200	Carg14558	Silver-seed gourd	carcmoB0204
CmoCh18G004200	Carg19908	Silver-seed gourd	carcmoB1081

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G004200	CmoCh13G006000	Cucurbita moschata (Rifu)	cmocmoB170

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G004200	Cucurbita moschata (Rifu)	cmocmoB334
CmoCh18G004200	Cucumber (Chinese Long) v3	cmocucB0494