CmoCh18G003620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G003620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGag-Pol polyprotein
LocationCmo_Chr18 : 2359026 .. 2362510 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAACAAATGGGAGGCTTCACATTGAAGGGTGAAGAAGCACTCTACACGAGTGAAAGTCAGAGCAATAATAGGCCGTCTACCAGACGTGGATACAATGGTGACAAAAGAAGAAGCCACCAAGGAACTGCACAACCTGAGAGAGCTGAGAAGAACGACAACAAGAGTTTTCAAAGAACGAGATTTGGTGGTATTTGCTATAACTGCGGGAAAAAGGGCCATATGTCTAGAGATTGTTGGTCCAGGAAAAAGTCCATTGAAAACAATGTGGCAATATCCAAAAAGAAGATAGAAGATGAATGGGATGCAGAGGTACTATGTCCCATAGAAGAAGACGAGCTAGCACTCATGGCGACAATGGAAGACCATATCAACTATGAGAATGACTGGATCGTTGATTCAGGATGTTCAAATCACATGACTGGCGATCAGAGAAAATTGCAAGACAAGAAAGAGTACAAAGGAAGTCGTATGGTACGTACAGCAAATAACACACAGTTATCAATTGCTCAAATCGGCAATACGACAATCATGCCTGGCAATAAGTCTGATACAGTGTCGCTACATAATGTTTATCATGTACCGGGTATAAAGAAGAACTTGTTGTCAGTGTCACAACTAACAACATCAGGAAGCTATGTCTTGTTTGGGCCAGAAGATGTAAAAGTTTATCAAGATGTTAAGATAATAGGAAAGCCGACGATAGAAGGACGAAGAGTGGAGTCTGTCTACGTTCTATCTGCAGAGTCTGCCTATGTTGACAAGACCCGAAAGAATGAGACGACAGATCTATGGCATGCAAGATTGGGACATATTAGCTACCATAAGTTGAAGCTGATTATGGAGAAATCTATGCTCAAAGGTCTACCACAACTGGAAGTCAAAACAGACGTTGTCTGCGCTGGATGTCAGTATGGTAAAGCTCATCAATTACCATACAAAGAGTCAAGTTTCAAAGCAAAGAAACCATTAGAGTTAGTTCACTCTGATTTGTTCGGCCCAGTCAAACAAGCATCGATCAGCGGAATGCGGTATATGGTGACATTTATTGACGACTACTCAAGATATGTGTGGATTTTCTTTATGAAAGAAAAGTCTGACACGTTCTCAAAGTTTCAAGAATTCAAGATGATGGTCGAAGGAGAAGTAGGAGCGAAGATTCGTTGTCTACGTTCAGACAATGGCGGAGAATACACGTCAGATGAGTTCGATCAATATTTACACGAGTGTGGGATACGACGTCAATTTACATGTGCCAACACGCCACAACAAAATGGTGTAGCAGAAAGAAAGAATCGACACCTTGCAGAAACCTGTCGAAGCATGTTACACGCAAAGAACGTTCCAGGAAGATTTTGGGCTGAAGCTATGCGAACTGCTGCCCATGTGATCAACAAGCTTCCTCAACCAAAGCTAGGGTTCGTCTCACCATTTGAGATACTATGGGATATGAAACCTACAATTAGTTACTTCCGAGTATTTGGCTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGTGTATTTGTTGGATACGACAATCAAAGAAAAGGATGGAGGTGCTGTGATCCAACAAGTGGAAAATACTATACATCAAGAGATGTAGTTTTTGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAAGTCTTATCAGACCTTGAGCAAACATTGAAGAAATTCTTCTACAGAACATGGGGGAGCAAACTACACAAATTCAATCAAATGTCGATGCATCTGAAAATCCAAGCGACATTGATATTGACAAGCAGGAGGTGACTCAATCAAGCGAATCTGATAAAAATGAAACAACACATCAACAACTTAGGCGATCAAATAGAATCCGAAGGCCAAATCCTAAGTATGCAAATGCAGCTATTGTAGAAGATAGAGTTTACGAACCAGAGACATATGAAGAAGCATCACAAAACTCGGTTTGGCAGAAAGCGATGGAGGAAGAAATTATAGCCTTGGAGCATAATCAAACTTGGGAACTAGTGCCAAGACTAGGAGATATCAAACCCGTCTCTTGCAAGTGGGTCTATAAAATAAAGCGTCGACCGGATGGATCAATCGAGAGATACAAGGCTCGACTCGTGGCTCGAGGATTTTCTCAACAATATGGACTAGATTATGATGAAACATTCAGTCCAGTGGCAAAGATTACTACCGTACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTGGAAACTGTGGCAAATGGATGTGAAGAATGCCTTCTTGCACGGAGAGCTAGACAGGGAGATTTATATGAACCAACCAAAGGGATTTGAGAGTGCAGCTAATCCTAATTATGTATGCAAGCTTAGAAAAGCTCTTTATGGACTGAAACAAGCACCGAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCGCATGCAGACTCAAGCCTATTCATCAAAGAAAGAGAAGGAAATTTGACAATTGTGTTGGTCTACGTGGACGATTTGATTATCACCGGGGACGATGAAAGAGAAATTTATCAAACAAGAGAAAATTTATCAATACGCTTTCAGATGAAAGAGCTAGGAGAGCTTAAACACTTCTTAGGCCTAGAAGTTGATCGCACAGATGAAGGACTGTTTCTCTGCCAACAAAAGTATACCAGAGACATGCTTCAGAAGTTCAACATGTTAGAGTGCAAGCAAGTTTCAACACCGATGGAGATAAATGCCAAGATTTGTGCACATGAAGGCAAAGAGTTGAACGATGAAACAACGTACCGACAACTAGTAGGTAGTCTTATCTACCTAACTTTAACTCGACCTGATATCTCTTATGCAGTTGGGGTTATGAGTCGATACATGCAAAGTCCAAAGAAGCCTCATCTGGATGCAGCTCGACGGATCTTGAGATATATCAAAGGTACAATCGACTATGGTCTTTTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGACTATGCAGGAGACCATGATGCTTGGAGGCCAACCACTGGGTATGTGTTCAAGTTTGGTTCGGGAACAATTTCTTGGTGTAGCAAGAGACAACCAACAGTATCATTATCAATTACAGAAGCAGAGTATAGAGCAGCGGCTGGAGCAGCCCAGGAAAGTACATGGCTAAAACTCTTGATGGAAGATTTGCACCAGAAAATTGACTATCCAATATCACTTCTTTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCGTGCTAGAACAAAGCTTGTGGAGGTGCACTACCATTTCATTAGAGAGAAGGTCCTAAAGGAAGAAATCGAGATGCAGCAGATCAAGACAGATGACCAAGTAGCAGACTTGTTTACAAAAGGGTTGAATACTAGCAAACATGAGAGCTTTCGCTGTCAGCTCAACATGATGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA

mRNA sequence

ATGGCTAAACAAATGGGAGGCTTCACATTGAAGGGTGAAGAAGCACTCTACACGAGTGAAAGTCAGAGCAATAATAGGCCGTCTACCAGACGTGGATACAATGGTGACAAAAGAAGAAGCCACCAAGGAACTGCACAACCTGAGAGAGCTGAGAAGAACGACAACAAGAGTTTTCAAAGAACGAGATTTGGTGGTATTTGCTATAACTGCGGGAAAAAGGGCCATATGTCTAGAGATTGTTGGTCCAGGAAAAAGTCCATTGAAAACAATGTGGCAATATCCAAAAAGAAGATAGAAGATGAATGGGATGCAGAGGTACTATGTCCCATAGAAGAAGACGAGCTAGCACTCATGGCGACAATGGAAGACCATATCAACTATGAGAATGACTGGATCGTTGATTCAGGATGTTCAAATCACATGACTGGCGATCAGAGAAAATTGCAAGACAAGAAAGAGTACAAAGGAAGTCGTATGGTACGTACAGCAAATAACACACAGTTATCAATTGCTCAAATCGGCAATACGACAATCATGCCTGGCAATAAGTCTGATACAGTGTCGCTACATAATGTTTATCATGTACCGGGTATAAAGAAGAACTTGTTGTCAGTGTCACAACTAACAACATCAGGAAGCTATGTCTTGTTTGGGCCAGAAGATGTAAAAGTTTATCAAGATGTTAAGATAATAGGAAAGCCGACGATAGAAGGACGAAGAGTGGAGTCTGTCTACGTTCTATCTGCAGAGTCTGCCTATGTTGACAAGACCCGAAAGAATGAGACGACAGATCTATGGCATGCAAGATTGGGACATATTAGCTACCATAAGTTGAAGCTGATTATGGAGAAATCTATGCTCAAAGGTCTACCACAACTGGAAGTCAAAACAGACGTTGTCTGCGCTGGATGTCAGTATGGTAAAGCTCATCAATTACCATACAAAGAGTCAAGTTTCAAAGCAAAGAAACCATTAGAGTTAGTTCACTCTGATTTGTTCGGCCCAGTCAAACAAGCATCGATCAGCGGAATGCGGTATATGGTGACATTTATTGACGACTACTCAAGATATGTGTGGATTTTCTTTATGAAAGAAAAGTCTGACACGTTCTCAAAGTTTCAAGAATTCAAGATGATGGTCGAAGGAGAAGTAGGAGCGAAGATTCGTTGTCTACGTTCAGACAATGGCGGAGAATACACGTCAGATGAGTTCGATCAATATTTACACGAGTGTGGGATACGACGTCAATTTACATGTGCCAACACGCCACAACAAAATGGTGTAGCAGAAAGAAAGAATCGACACCTTGCAGAAACCTGTCGAAGCATGTTACACGCAAAGAACGTTCCAGGAAGATTTTGGGCTGAAGCTATGCGAACTGCTGCCCATGTGATCAACAAGCTTCCTCAACCAAAGCTAGGGTTCGTCTCACCATTTGAGATACTATGGGATATGAAACCTACAATTAGTTACTTCCGAGTATTTGGCTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGTGTATTTGTTGGATACGACAATCAAAGAAAAGGATGGAGGTGCTGTGATCCAACAAGTGGAAAATACTATACATCAAGAGATAACATGGGGGAGCAAACTACACAAATTCAATCAAATGTCGATGCATCTGAAAATCCAAGCGACATTGATATTGACAAGCAGGAGGTGACTCAATCAAGCGAATCTGATAAAAATGAAACAACACATCAACAACTTAGGCGATCAAATAGAATCCGAAGGCCAAATCCTAAGTATGCAAATGCAGCTATTGTAGAAGATAGAGTTTACGAACCAGAGACATATGAAGAAGCATCACAAAACTCGGTTTGGCAGAAAGCGATGGAGGAAGAAATTATAGCCTTGGAGCATAATCAAACTTGGGAACTAGTGCCAAGACTAGGAGATATCAAACCCGTCTCTTGCAAGTGGGTCTATAAAATAAAGCGTCGACCGGATGGATCAATCGAGAGATACAAGGCTCGACTCGTGGCTCGAGGATTTTCTCAACAATATGGACTAGATTATGATGAAACATTCAGTCCAGTGGCAAAGATTACTACCGTACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTGGAAACTGTGGCAAATGGATGTGAAGAATGCCTTCTTGCACGGAGAGCTAGACAGGGAGATTTATATGAACCAACCAAAGGGATTTGAGAGTGCAGCTAATCCTAATTATGTATGCAAGCTTAGAAAAGCTCTTTATGGACTGAAACAAGCACCGAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCGCATGCAGACTCAAGCCTATTCATCAAAGAAAGAGAAGGAAATTTGACAATTGTGTTGGTCTACGTGGACGATTTGATTATCACCGGGGACGATGAAAGAGAAATTTATCAAACAAGAGAAAATTTATCAATACGCTTTCAGATGAAAGAGCTAGGAGAGCTTAAACACTTCTTAGGCCTAGAAGTTGATCGCACAGATGAAGGACTGTTTCTCTGCCAACAAAAGTATACCAGAGACATGCTTCAGAAGTTCAACATGTTAGAGTGCAAGCAAGTTTCAACACCGATGGAGATAAATGCCAAGATTTGTGCACATGAAGGCAAAGAGTTGAACGATGAAACAACGTACCGACAACTAGTAGGTAGTCTTATCTACCTAACTTTAACTCGACCTGATATCTCTTATGCAGTTGGGGTTATGAGTCGATACATGCAAAGTCCAAAGAAGCCTCATCTGGATGCAGCTCGACGGATCTTGAGATATATCAAAGGTACAATCGACTATGGTCTTTTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGACTATGCAGGAGACCATGATGCTTGGAGGCCAACCACTGGGTATGTGTTCAAGTTTGGTTCGGGAACAATTTCTTGGTGTAGCAAGAGACAACCAACAGTATCATTATCAATTACAGAAGCAGAGTATAGAGCAGCGGCTGGAGCAGCCCAGGAAAGTACATGGCTAAAACTCTTGATGGAAGATTTGCACCAGAAAATTGACTATCCAATATCACTTCTTTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCGTGCTAGAACAAAGCTTGTGGAGGTGCACTACCATTTCATTAGAGAGAAGGTCCTAAAGGAAGAAATCGAGATGCAGCAGATCAAGACAGATGACCAAGTAGCAGACTTGTTTACAAAAGGGTTGAATACTAGCAAACATGAGAGCTTTCGCTGTCAGCTCAACATGATGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA

Coding sequence (CDS)

ATGGCTAAACAAATGGGAGGCTTCACATTGAAGGGTGAAGAAGCACTCTACACGAGTGAAAGTCAGAGCAATAATAGGCCGTCTACCAGACGTGGATACAATGGTGACAAAAGAAGAAGCCACCAAGGAACTGCACAACCTGAGAGAGCTGAGAAGAACGACAACAAGAGTTTTCAAAGAACGAGATTTGGTGGTATTTGCTATAACTGCGGGAAAAAGGGCCATATGTCTAGAGATTGTTGGTCCAGGAAAAAGTCCATTGAAAACAATGTGGCAATATCCAAAAAGAAGATAGAAGATGAATGGGATGCAGAGGTACTATGTCCCATAGAAGAAGACGAGCTAGCACTCATGGCGACAATGGAAGACCATATCAACTATGAGAATGACTGGATCGTTGATTCAGGATGTTCAAATCACATGACTGGCGATCAGAGAAAATTGCAAGACAAGAAAGAGTACAAAGGAAGTCGTATGGTACGTACAGCAAATAACACACAGTTATCAATTGCTCAAATCGGCAATACGACAATCATGCCTGGCAATAAGTCTGATACAGTGTCGCTACATAATGTTTATCATGTACCGGGTATAAAGAAGAACTTGTTGTCAGTGTCACAACTAACAACATCAGGAAGCTATGTCTTGTTTGGGCCAGAAGATGTAAAAGTTTATCAAGATGTTAAGATAATAGGAAAGCCGACGATAGAAGGACGAAGAGTGGAGTCTGTCTACGTTCTATCTGCAGAGTCTGCCTATGTTGACAAGACCCGAAAGAATGAGACGACAGATCTATGGCATGCAAGATTGGGACATATTAGCTACCATAAGTTGAAGCTGATTATGGAGAAATCTATGCTCAAAGGTCTACCACAACTGGAAGTCAAAACAGACGTTGTCTGCGCTGGATGTCAGTATGGTAAAGCTCATCAATTACCATACAAAGAGTCAAGTTTCAAAGCAAAGAAACCATTAGAGTTAGTTCACTCTGATTTGTTCGGCCCAGTCAAACAAGCATCGATCAGCGGAATGCGGTATATGGTGACATTTATTGACGACTACTCAAGATATGTGTGGATTTTCTTTATGAAAGAAAAGTCTGACACGTTCTCAAAGTTTCAAGAATTCAAGATGATGGTCGAAGGAGAAGTAGGAGCGAAGATTCGTTGTCTACGTTCAGACAATGGCGGAGAATACACGTCAGATGAGTTCGATCAATATTTACACGAGTGTGGGATACGACGTCAATTTACATGTGCCAACACGCCACAACAAAATGGTGTAGCAGAAAGAAAGAATCGACACCTTGCAGAAACCTGTCGAAGCATGTTACACGCAAAGAACGTTCCAGGAAGATTTTGGGCTGAAGCTATGCGAACTGCTGCCCATGTGATCAACAAGCTTCCTCAACCAAAGCTAGGGTTCGTCTCACCATTTGAGATACTATGGGATATGAAACCTACAATTAGTTACTTCCGAGTATTTGGCTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGTGTATTTGTTGGATACGACAATCAAAGAAAAGGATGGAGGTGCTGTGATCCAACAAGTGGAAAATACTATACATCAAGAGATAACATGGGGGAGCAAACTACACAAATTCAATCAAATGTCGATGCATCTGAAAATCCAAGCGACATTGATATTGACAAGCAGGAGGTGACTCAATCAAGCGAATCTGATAAAAATGAAACAACACATCAACAACTTAGGCGATCAAATAGAATCCGAAGGCCAAATCCTAAGTATGCAAATGCAGCTATTGTAGAAGATAGAGTTTACGAACCAGAGACATATGAAGAAGCATCACAAAACTCGGTTTGGCAGAAAGCGATGGAGGAAGAAATTATAGCCTTGGAGCATAATCAAACTTGGGAACTAGTGCCAAGACTAGGAGATATCAAACCCGTCTCTTGCAAGTGGGTCTATAAAATAAAGCGTCGACCGGATGGATCAATCGAGAGATACAAGGCTCGACTCGTGGCTCGAGGATTTTCTCAACAATATGGACTAGATTATGATGAAACATTCAGTCCAGTGGCAAAGATTACTACCGTACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTGGAAACTGTGGCAAATGGATGTGAAGAATGCCTTCTTGCACGGAGAGCTAGACAGGGAGATTTATATGAACCAACCAAAGGGATTTGAGAGTGCAGCTAATCCTAATTATGTATGCAAGCTTAGAAAAGCTCTTTATGGACTGAAACAAGCACCGAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCGCATGCAGACTCAAGCCTATTCATCAAAGAAAGAGAAGGAAATTTGACAATTGTGTTGGTCTACGTGGACGATTTGATTATCACCGGGGACGATGAAAGAGAAATTTATCAAACAAGAGAAAATTTATCAATACGCTTTCAGATGAAAGAGCTAGGAGAGCTTAAACACTTCTTAGGCCTAGAAGTTGATCGCACAGATGAAGGACTGTTTCTCTGCCAACAAAAGTATACCAGAGACATGCTTCAGAAGTTCAACATGTTAGAGTGCAAGCAAGTTTCAACACCGATGGAGATAAATGCCAAGATTTGTGCACATGAAGGCAAAGAGTTGAACGATGAAACAACGTACCGACAACTAGTAGGTAGTCTTATCTACCTAACTTTAACTCGACCTGATATCTCTTATGCAGTTGGGGTTATGAGTCGATACATGCAAAGTCCAAAGAAGCCTCATCTGGATGCAGCTCGACGGATCTTGAGATATATCAAAGGTACAATCGACTATGGTCTTTTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGACTATGCAGGAGACCATGATGCTTGGAGGCCAACCACTGGGTATGTGTTCAAGTTTGGTTCGGGAACAATTTCTTGGTGTAGCAAGAGACAACCAACAGTATCATTATCAATTACAGAAGCAGAGTATAGAGCAGCGGCTGGAGCAGCCCAGGAAAGTACATGGCTAAAACTCTTGATGGAAGATTTGCACCAGAAAATTGACTATCCAATATCACTTCTTTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCGTGCTAGAACAAAGCTTGTGGAGGTGCACTACCATTTCATTAGAGAGAAGGTCCTAAAGGAAGAAATCGAGATGCAGCAGATCAAGACAGATGACCAAGTAGCAGACTTGTTTACAAAAGGGTTGAATACTAGCAAACATGAGAGCTTTCGCTGTCAGCTCAACATGATGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA
Homology
[Close]
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.8e-117
Identity = 253/596 (42.45%), Postives = 374/596 (62.75%), Query Frame = 1 

Query: 534  DPTSGKYYTSRDNMGEQTTQIQSNVDASENPSDIDIDKQEVTQSSESDKNETTHQQLRRS 593
            +PTS +  T  D + EQ  Q    ++  E    +D   +EV   ++ ++    HQ LRRS
Sbjct: 736  NPTSAESTT--DEVSEQGEQPGEVIEQGEQ---LDEGVEEVEHPTQGEEQ---HQPLRRS 795

Query: 594  NRIRRPNPKYANAAIV---EDRVYEPETYEEA---SQNSVWQKAMEEEIIALEHNQTWEL 653
             R R  + +Y +   V   +DR  EPE+ +E     + +   KAM+EE+ +L+ N T++L
Sbjct: 796  ERPRVESRRYPSTEYVLISDDR--EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKL 855

Query: 654  VPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVR 713
            V      +P+ CKWV+K+K+  D  + RYKARLV +GF Q+ G+D+DE FSPV K+T++R
Sbjct: 856  VELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIR 915

Query: 714  VLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQ 773
             +L+LAAS D ++ Q+DVK AFLHG+L+ EIYM QP+GFE A   + VCKL K+LYGLKQ
Sbjct: 916  TILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQ 975

Query: 774  APRAWYGKIAEFLTQSGYSVAHADSSLFIKE-REGNLTIVLVYVDDLIITGDDEREIYQT 833
            APR WY K   F+    Y   ++D  ++ K   E N  I+L+YVDD++I G D+  I + 
Sbjct: 976  APRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKL 1035

Query: 834  RENLSIRFQMKELGELKHFLGLEV--DRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTP- 893
            + +LS  F MK+LG  +  LG+++  +RT   L+L Q+KY   +L++FNM   K VSTP 
Sbjct: 1036 KGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPL 1095

Query: 894  ---MEINAKICAHEGKELND--ETTYRQLVGSLIY-LTLTRPDISYAVGVMSRYMQSPKK 953
               ++++ K+C    +E  +  +  Y   VGSL+Y +  TRPDI++AVGV+SR++++P K
Sbjct: 1096 AGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGK 1155

Query: 954  PHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKFGSGT 1013
             H +A + ILRY++GT    L +  S D  L GY DAD AGD D  + +TGY+F F  G 
Sbjct: 1156 EHWEAVKWILRYLRGTTGDCLCFGGS-DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGA 1215

Query: 1014 ISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMED--LHQKIDYPISLLCDNQSAI 1073
            ISW SK Q  V+LS TEAEY AA    +E  WLK  +++  LHQK +Y +   CD+QSAI
Sbjct: 1216 ISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK-EYVV--YCDSQSAI 1275

Query: 1074 RLAENPVFRARTKLVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLNTSKHE 1112
             L++N ++ ARTK ++V YH+IRE V  E +++ +I T++  AD+ TK +  +K E
Sbjct: 1276 DLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

[Close]
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 369.8 bits (948), Expect = 1.1e-100
Identity = 203/525 (38.67%), Postives = 320/525 (60.95%), Query Frame = 1 

Query: 616  PETYEEAS---QNSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGS 675
            P +++E       S W++A+  E+ A + N TW +  R  +   V  +WV+ +K    G+
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950

Query: 676  IERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHG 735
              RYKARLVARGF+Q+Y +DY+ETF+PVA+I++ R +L+L    + K+ QMDVK AFL+G
Sbjct: 951  PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1010

Query: 736  ELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADS 795
             L  EIYM  P+G   + N + VCKL KA+YGLKQA R W+    + L +  +  +  D 
Sbjct: 1011 TLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDR 1070

Query: 796  SLFIKEREGNLT---IVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLE 855
             ++I ++ GN+     VL+YVDD++I   D   +   +  L  +F+M +L E+KHF+G+ 
Sbjct: 1071 CIYILDK-GNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIR 1130

Query: 856  VDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPM--EINAKICAHEGKELNDETTYRQL 915
            ++  ++ ++L Q  Y + +L KFNM  C  VSTP+  +IN ++      + +  T  R L
Sbjct: 1131 IEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL---NSDEDCNTPCRSL 1190

Query: 916  VGSLIYLTL-TRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSK-- 975
            +G L+Y+ L TRPD++ AV ++SRY            +R+LRY+KGTID  L++K++   
Sbjct: 1191 IGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAF 1250

Query: 976  DCKLVGYCDADYAGDHDAWRPTTGYVFK-FGSGTISWCSKRQPTVSLSITEAEYRAAAGA 1035
            + K++GY D+D+AG     + TTGY+FK F    I W +KRQ +V+ S TEAEY A   A
Sbjct: 1251 ENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEA 1310

Query: 1036 AQESTWLKLLMEDLHQKIDYPISLLCDNQSAIRLAENPVFRARTKLVEVHYHFIREKVLK 1095
             +E+ WLK L+  ++ K++ PI +  DNQ  I +A NP    R K +++ YHF RE+V  
Sbjct: 1311 VREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQN 1370

Query: 1096 EEIEMQQIKTDDQVADLFTKGLNTSKHESFRCQLNMMQRMRTSAE 1129
              I ++ I T++Q+AD+FTK L  ++    R +L ++Q  +++AE
Sbjct: 1371 NVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE 1409

[Close]
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-45
Identity = 96/224 (42.86%), Postives = 132/224 (58.93%), Query Frame = 1 

Query: 806  VLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYT 865
            +L+YVDD+++TG     +      LS  F MK+LG + +FLG+++     GLFL Q KY 
Sbjct: 3    LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 866  RDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAV 925
              +L    ML+CK +STP+ +         K   D + +R +VG+L YLTLTRPDISYAV
Sbjct: 63   EQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISYAV 122

Query: 926  GVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRP 985
             ++ + M  P     D  +R+LRY+KGTI +GL   ++    +  +CD+D+AG     R 
Sbjct: 123  NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 986  TTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTW 1030
            TTG+    G   ISW +KRQPTVS S TE EYRA A  A E TW
Sbjct: 183  TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-45
Identity = 102/307 (33.22%), Postives = 158/307 (51.47%), Query Frame = 1 

Query: 723  MDVKNAFLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQ 782
            MDV  AFL+  +D  IY+ QP GF +  NP+YV +L   +YGLKQAP  W   I   L +
Sbjct: 1    MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 783  SGYSVAHADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGEL 842
             G+     +  L+ +        + VYVDDL++     +   + ++ L+  + MK+LG++
Sbjct: 61   IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 843  KHFLGLEVDRTDEG-LFLCQQKYTRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDE 902
              FLGL + ++  G + L  Q Y      +  +   K   TP+  +  +       L D 
Sbjct: 121  DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 903  TTYRQLVGSLIYLTLT-RPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLY 962
            T Y+ +VG L++   T RPDISY V ++SR+++ P+  HL++ARR+LRY+  T    L Y
Sbjct: 181  TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 963  KRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKR-QPTVSLSITEAEYRA 1022
            +      L  YCDA +   HD    T GYV       ++W SK+ +  + +  TEAEY  
Sbjct: 241  RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300

Query: 1023 AAGAAQE 1027
            A+    E
Sbjct: 301  ASETVME 307

[Close]
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-32
Identity = 117/462 (25.32%), Postives = 221/462 (47.84%), Query Frame = 1 

Query: 676  YKARLVARGFSQQYGLDYDETFSPVAKITT----VRVLLALAASKDWKLWQMDVKNAFLH 735
            YKAR+V RG +Q       +T+S +   +     +++ L +A +++  +  +D+ +AFL+
Sbjct: 1336 YKARIVCRGDTQS-----PDTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLY 1395

Query: 736  GELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHAD 795
             +L+ EIY+  P       +   V KL KALYGLKQ+P+ W   + ++L   G       
Sbjct: 1396 AKLEEEIYIPHPH------DRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYT 1455

Query: 796  SSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGEL------KHF 855
              L+  + E    ++ VYVDD +I   +E+ + +    L   F++K  G L         
Sbjct: 1456 PGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDI 1515

Query: 856  LGLEV--DRTDEGLFLCQQKYTRDMLQKFN--MLECKQVSTPMEINAKICAHEGKELNDE 915
            LG+++  ++    + L  + +   M +K+N  + + ++ S P     KI   +      E
Sbjct: 1516 LGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSE 1575

Query: 916  TTYR-------QLVGSLIYLT-LTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGT 975
              +R       QL+G L Y+    R DI++AV  ++R +  P +       +I++Y+   
Sbjct: 1576 EEFRQGVLKLQQLLGELNYVRHKCRYDINFAVKKVARLVNYPHERVFYMIYKIIQYLVRY 1635

Query: 976  IDYGLLYKR--SKDCKLVGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTVSLS 1035
             D G+ Y R  +KD K++   DA    ++DA +   G +  +G    +  S +     +S
Sbjct: 1636 KDIGIHYDRDCNKDKKVIAITDASVGSEYDA-QSRIGVILWYGMNIFNVYSNKSTNRCVS 1695

Query: 1036 ITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQSAIRLAENPVFRARTKLVE 1095
             TEAE  A      +S  LK+ +++L +  +  I ++ D++ AI+       + + K   
Sbjct: 1696 STEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTW 1755

Query: 1096 VHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLNTSKHESF 1114
            +    I+EK+ ++ I++ +I     +ADL TK ++ S  + F
Sbjct: 1756 IKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRF 1783

[Close]
BLAST of CmoCh18G003620 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 1453.7 bits (3762), Expect = 0.0e+00
Identity = 754/1158 (65.11%), Postives = 872/1158 (75.30%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNRPST--RRGYNGDKRRSHQGTAQPERAEKNDNKS 60
            +AKQMGG +LKGEE ALY  +   N+   T  R   N DK +  QG  +  R E +    
Sbjct: 192  LAKQMGGVSLKGEEEALYAHKGGWNSXQHTVRRTKKNEDKAKCSQGE-RSARVEGDSKNP 251

Query: 61   FQRTRFGGICYNCGKKGHMSRDCWSRKKSIENNVAISKKKIEDEWDAEVLCPIEEDELAL 120
                +F G CYNC KKGHM++DCWS+K  +E+N   SK   EDEWDA+        E A 
Sbjct: 252  GTXKKFEGKCYNCXKKGHMAKDCWSKKGLVESNATTSKS--EDEWDAQAFFAAI-GESAF 311

Query: 121  MATMEDHINYENDWIVDSGCSNHMTGDQRKLQDKKEYKGSRMVRTANNTQLSIAQIGNTT 180
            +AT  + I+YE DWI+DSGCSNHMTGD+ KLQD  EYKG  MV TANN++L IA IGNT 
Sbjct: 312  IATTSEQIDYEKDWIIDSGCSNHMTGDKEKLQDLSEYKGRHMVVTANNSKLPIAHIGNTV 371

Query: 181  IMPGNKSDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVLFGPEDVKVYQDVKIIGKPTIE 240
            +     ++ VSL NVYHVPG+KKNLLSV+QLT+SG  VLFGP+DVKVY D++++ +P I+
Sbjct: 372  VSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSGHSVLFGPQDVKVYHDLEVMEEPVIK 431

Query: 241  GRRVESVYVLSAESAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLPQLEVKT 300
            GRR+ESVYV+SAE+AYVDKTRKNET DLWH RL HISY KL ++M+KSMLKGLPQLEV+ 
Sbjct: 432  GRRLESVYVMSAETAYVDKTRKNETADLWHMRLSHISYSKLTMMMKKSMLKGLPQLEVRK 491

Query: 301  DVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFGPVKQASISGMRYMVTFIDDYSRY 360
              +CA CQYGKAHQLPY+ES +KAK PLEL+HSD+FGPVKQAS+SGM           +Y
Sbjct: 492  XTICAXCQYGKAHQLPYEESKWKAKGPLELIHSDVFGPVKQASLSGM-----------KY 551

Query: 361  VWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNGGEYTSDEFDQYLHECGIRRQF 420
            +  F      D FS+    +M                    +TS E  +Y         F
Sbjct: 552  MVTFI-----DDFSRRVYLQMSF------------------FTSSENXEYAIS------F 611

Query: 421  TCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAEAMRTAAHVINKLPQPKLGFVS 480
            TCANTPQQNGV ERKNRHLAE CRSMLHAKNVPG FWAE M+TAA VIN+LPQ +L F S
Sbjct: 612  TCANTPQQNGVXERKNRHLAEICRSMLHAKNVPGXFWAEXMKTAAFVINRLPQQRLNFSS 671

Query: 481  PFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAVKCVFVGYDNQRKGWRCCDPTS 540
            PFE LW++KPT+SYFRVFGCVCYVFVP+HLRSK DKKAV+CV VGYD+QRK WRCCDPT+
Sbjct: 672  PFEKLWNIKPTVSYFRVFGCVCYVFVPNHLRSKMDKKAVRCVLVGYDSQRKXWRCCDPTT 731

Query: 541  GKYYTSRDNMGE-----------------------QTTQIQSNVDASENPSDIDIDKQEV 600
            GK YTSR+ + +                       Q+ +IQ ++  +EN  D DI   + 
Sbjct: 732  GKCYTSRNVVFDESSSWWSSEKEILXDSBVFKDELQSARIQLSLGEAENAXDGDIG-DDX 791

Query: 601  TQSSESDKNETTHQQLRRSNRIRRPNPKYANAAIVED-RVYEPETYEEASQNSVWQKAME 660
            TQS      +T         R ++PNPKYAN AIVED    EP T+ EA QNS W KAM 
Sbjct: 792  TQSPW----QTGVHGQPSEERTKKPNPKYANVAIVEDANAKEPXTFAEAFQNSDWSKAMX 851

Query: 661  EEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDY 720
            EEI AL+ NQTWELVP+  D++P SCKWVYKIKRR DGSIER+KA LVARGFSQQYGLDY
Sbjct: 852  EEIAALKRNQTWELVPKPRDVEPXSCKWVYKIKRRTDGSIERHKAXLVARGFSQQYGLDY 911

Query: 721  DETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAANPN 780
            DETFSPV K+TTVRVLLALAA+KDW LWQMDVKNAFLHGELDREIYMNQP GF+S  +P 
Sbjct: 912  DETFSPVXKLTTVRVLLALAANKDWDLWQMDVKNAFLHGELDREIYMNQPMGFQSQGHPE 971

Query: 781  YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLTIVLVYVDDL 840
            YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSV  ADSSLF+K   G L IVLVYVDDL
Sbjct: 972  YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVTPADSSLFVKANGGKLAIVLVYVDDL 1031

Query: 841  IITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYTRDMLQKFN 900
            IITGDD  EI++T+ENLS+RF+MKELG+LKHFLGLEVDRT+EG+FLCQQKY +D+L+KF 
Sbjct: 1032 IITGDDVEEIFRTKENLSVRFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAKDLLKKFG 1091

Query: 901  MLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAVGVMSRYMQ 960
            MLECK +STPME NAK+C HEGK+L D T YRQLVGSL+YLTLT PDISYAVGVMSRYMQ
Sbjct: 1092 MLECKPISTPMEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTLTXPDISYAVGVMSRYMQ 1151

Query: 961  SPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKF 1020
            +PKKPHL+A RRILR++KGTIDYGLLYK+ +DCKLVGYCDADYAGDHD    TTGYVF  
Sbjct: 1152 NPKKPHLEAVRRILRHVKGTIDYGLLYKKXEDCKLVGYCDADYAGDHDTRXSTTGYVFML 1211

Query: 1021 GSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQS 1080
            GSG ISWCSKRQPTVSLS TEAEYRAAA A QES WL  LM DLHQ +DY + L CDNQS
Sbjct: 1212 GSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYAVPLYCDNQS 1271

Query: 1081 AIRLAENPVFRARTKLVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLNTSKHESF 1132
            A+RLAENPVF ARTK VEVHYHFIREKVLKEE+E+ QIK++DQVADLFTKGL+ SK ESF
Sbjct: 1272 AVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTKGLSGSKFESF 1300

[Close]
BLAST of CmoCh18G003620 vs. TrEMBL
Match: I1J3P8_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 1451.8 bits (3757), Expect = 0.0e+00
Identity = 741/1202 (61.65%), Postives = 899/1202 (74.79%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNR---------------PSTRRGYNGDKRRSHQGT 60
            +AK+MG  T+K EE AL+T +   + +               P  R   +G  +R  QG 
Sbjct: 190  LAKKMGSITIKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGGDQRERQG- 249

Query: 61   AQPERAEKNDNKS------------------FQRTRFGGICYNCGKKGHMSRDCWSRKKS 120
              P+  EKN  +                   F R    G C NCGKKGH++R+C   ++ 
Sbjct: 250  --PKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDG-CSNCGKKGHLTRECRYPRRR 309

Query: 121  IENNVAISKKK---------IEDEWDAEV-------LCPIEED--ELALMATMEDHINYE 180
             E NVA +K+K          E+EWDAE        +  +EED    AL A  +  INY+
Sbjct: 310  YEGNVATTKEKEEITLEASMSEEEWDAEAGYSQEVDIEDLEEDMEAPALAAIKDPKINYK 369

Query: 181  NDWIVDSGCSNHMTGDQRKLQDKKEYKGSRMVRTANNTQLSIAQIGNTTIMPGNKSDTVS 240
            +DWIVDSGCSNHMT D  KLQD  EYKG +MV TANN++LSI+ +G T + P   +  + 
Sbjct: 370  DDWIVDSGCSNHMTNDDNKLQDMTEYKGGKMVLTANNSKLSISHVGKTAV-PRYGTQQLQ 429

Query: 241  LHNVYHVPGIKKNLLSVSQLTTSGSYVLFGPEDVKVYQDVKIIGKPTIEGRRVESVYVLS 300
            L  VYHVPG+KKNLLSV QLT  G YVLFGP++V +++ +K+IG P  EG++ +S++VLS
Sbjct: 430  LERVYHVPGLKKNLLSVPQLTAEGKYVLFGPQEVAIFRRLKVIGTPIKEGKKRDSLFVLS 489

Query: 301  AESAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLPQLEVKTDVVCAGCQYGK 360
            AESAYVDKTRKNET DLWHARLGHISYHKLK +MEK ++KGL  L+++TD+VCAGCQYGK
Sbjct: 490  AESAYVDKTRKNETADLWHARLGHISYHKLKEMMEKHVVKGLSDLDIRTDMVCAGCQYGK 549

Query: 361  AHQLPYKESSFKAKKPLELVHSDLFGPVKQASISGMRYMVTFIDDYSRYVWIFFMKEKSD 420
            AHQLPYKES  ++K PLEL+HSD+FGPVKQ S+ GMRYMVTFIDD+SRYVW++FMKEKS+
Sbjct: 550  AHQLPYKESQHQSKVPLELIHSDVFGPVKQISLGGMRYMVTFIDDFSRYVWVYFMKEKSE 609

Query: 421  TFSKFQEFKMMVEGEVGAKIRCLRSDNGGEYTSDEFDQYLHECGIRRQFTCANTPQQNGV 480
            TF KF+EFK M+EGE+  KIRCLR+DNG EY S+EF  YL +  I+RQ TC NTPQQNGV
Sbjct: 610  TFMKFKEFKDMIEGELEYKIRCLRTDNGREYLSNEFTIYLKKNKIKRQLTCPNTPQQNGV 669

Query: 481  AERKNRHLAETCRSMLHAKNVPGRFWAEAMRTAAHVINKLPQPKLGFVSPFEILWDMKPT 540
            AERKNRHLAETCRSMLHAKNVPGRFWAE MRTAAHVINKLPQ +LGF SP E LW MKP 
Sbjct: 670  AERKNRHLAETCRSMLHAKNVPGRFWAECMRTAAHVINKLPQVRLGFKSPHEKLWRMKPA 729

Query: 541  ISYFRVFGCVCYVFVPDHLRSKFDKKAVKCVFVGYDNQRKGWRCCDPTSGKYYTSRDNMG 600
            IS+ +VFGCVCY+FVPDHLR+KF+KKA +C+FVGYD+ RKGWRCCDPT+GK +TSR+ + 
Sbjct: 730  ISHLKVFGCVCYIFVPDHLRTKFEKKAKRCIFVGYDDARKGWRCCDPTTGKCHTSRNIVF 789

Query: 601  EQTT--------QIQSNVDASE-----------NPSDIDIDKQEVTQSS--------ESD 660
            ++ +        +I  + D  E            PS+ +      T+S         E  
Sbjct: 790  DEASSWWSPKKEEIPESPDVEEVIEEERDQKLETPSEGERSSPSKTKSPWKTGIHQPEEP 849

Query: 661  KNETTHQQLRRSNRIRRPNPKYANAAIVEDRV-YEPETYEEASQNSVWQKAMEEEIIALE 720
            + E   Q+LRRS R R+PNP+YANAA+ ++ +  EP +YEEA++   WQKAMEEEI AL+
Sbjct: 850  QTEEHDQELRRSTRPRKPNPRYANAALADESLPIEPSSYEEAARGPEWQKAMEEEIKALK 909

Query: 721  HNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDETFSPV 780
             NQTW+LVP+  D+KP+SCKWVYK+K R DGSIERYKARLVARGFSQ+YGLDY+ETFSPV
Sbjct: 910  ENQTWDLVPKPKDVKPISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPV 969

Query: 781  AKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAANPNYVCKLRK 840
            AKITTVRVLLALAASK W+LWQMDVKNAFLHGELD+EIYM QPKGFES   P +VCKL+K
Sbjct: 970  AKITTVRVLLALAASKSWELWQMDVKNAFLHGELDKEIYMEQPKGFESKKYPEHVCKLKK 1029

Query: 841  ALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLTIVLVYVDDLIITGDDE 900
            ALYGLKQAPRAWYGKI EFL  +G+ VA +DSSLF+  +EG L IVLVYVDDLIITGD  
Sbjct: 1030 ALYGLKQAPRAWYGKIGEFLVHNGFKVAPSDSSLFVMAKEGRLAIVLVYVDDLIITGDYS 1089

Query: 901  REIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYTRDMLQKFNMLECKQV 960
             EI +TRENLS+RFQMKELGEL+HFLGLEV+ T  G+FL QQKY +D+L+++ ML+CK +
Sbjct: 1090 EEIERTRENLSVRFQMKELGELRHFLGLEVEHTKNGIFLGQQKYAKDLLKRYGMLDCKPI 1149

Query: 961  STPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAVGVMSRYMQSPKKPHL 1020
            STPM+ NA++   +GK L D T YRQLVGSLIYLTL+RPDISYAVG+ SRYM +PKKPHL
Sbjct: 1150 STPMDPNARLQEDKGKNLEDATMYRQLVGSLIYLTLSRPDISYAVGMASRYMSTPKKPHL 1209

Query: 1021 DAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKFGSGTISW 1080
            DA RRILRY+KGT++YG+LYK++K+C+++GYCDADYAGD D  R TTGY+F  GSG I+W
Sbjct: 1210 DAIRRILRYVKGTLNYGILYKKTKECQVIGYCDADYAGDCDTRRSTTGYLFSLGSGAITW 1269

Query: 1081 CSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQSAIRLAEN 1123
            CSKRQPTV+LS TEAEYR+AA AAQESTWLK LMEDLHQ     + + CDN S IRLAEN
Sbjct: 1270 CSKRQPTVALSSTEAEYRSAAAAAQESTWLKQLMEDLHQTPKDQVWIFCDNLSTIRLAEN 1329

[Close]
BLAST of CmoCh18G003620 vs. TrEMBL
Match: I1J0P4_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 1447.2 bits (3745), Expect = 0.0e+00
Identity = 742/1234 (60.13%), Postives = 903/1234 (73.18%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNR---------------PSTRRGYNGDKRRSHQGT 60
            +AK+MG  T+K EE AL+T +   + +               P  RR  +G  +R  QG 
Sbjct: 190  LAKKMGSITIKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERRNSSGGDQRERQG- 249

Query: 61   AQPERAEKNDNKS------------------FQRTRFGGICYNCGKKGHMSRDCWSRKKS 120
              P+  EKN  +                   F R    G C NCGKKGH++R+C   ++ 
Sbjct: 250  --PKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDG-CSNCGKKGHLTRECRYPRRR 309

Query: 121  IENNVAISKKK---------IEDEWDAEV------------------LCPIEEDEL---- 180
             E NVA +K+K          E+EWDAE                      ++E+EL    
Sbjct: 310  YEGNVATTKEKEEITLEASMSEEEWDAEAGYSQEVDIKDLEEDMEAPAFAMDEEELEEDM 369

Query: 181  -------------------ALMATMEDHINYENDWIVDSGCSNHMTGDQRKLQDKKEYKG 240
                               AL A  +  INY++DWIVDSGCSNHMT D  KLQD  EYKG
Sbjct: 370  KPPVFATDEEELEEDMEAPALAAIKDPKINYKDDWIVDSGCSNHMTNDDNKLQDMTEYKG 429

Query: 241  SRMVRTANNTQLSIAQIGNTTIMPGNKSDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVL 300
             +MV TANN++LSI+ +G T ++P   +  + L  VYHVPG+KKNLLSV QLT  G YVL
Sbjct: 430  GKMVLTANNSKLSISHVGKT-VVPRYGTQQLQLERVYHVPGLKKNLLSVPQLTAEGKYVL 489

Query: 301  FGPEDVKVYQDVKIIGKPTIEGRRVESVYVLSAESAYVDKTRKNETTDLWHARLGHISYH 360
            FGP++V +++ +K+IG P +EG++ +S++VLSAESAYVDKTRKNET DLWHARLGH+SYH
Sbjct: 490  FGPQEVAIFRRLKVIGTPIMEGKKRDSLFVLSAESAYVDKTRKNETADLWHARLGHVSYH 549

Query: 361  KLKLIMEKSMLKGLPQLEVKTDVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFGPV 420
            KLK +MEK ++KGLP L+++TD+VCAGCQYGKAHQLPYKES  ++K PLEL+HSD+FGPV
Sbjct: 550  KLKEMMEKHVVKGLPDLDIRTDMVCAGCQYGKAHQLPYKESQHQSKVPLELIHSDVFGPV 609

Query: 421  KQASISGMRYMVTFIDDYSRYVWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNG 480
            KQ S+ GMRYMVTFIDD+SRYVW++FMKEKS+TF KF+EFK M+EGE+  KIRCLR+DNG
Sbjct: 610  KQISLGGMRYMVTFIDDFSRYVWVYFMKEKSETFIKFKEFKDMIEGELEYKIRCLRTDNG 669

Query: 481  GEYTSDEFDQYLHECGIRRQFTCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 540
             EY S+EF  YL +  I+RQ TC NTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE
Sbjct: 670  REYLSNEFTIYLKKKKIKRQLTCPNTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 729

Query: 541  AMRTAAHVINKLPQPKLGFVSPFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAV 600
             MRTAAHVINKLPQ +LGF SP E LW MKP IS+ +VFGCVCY+FVPDHLR+KF+KKA 
Sbjct: 730  CMRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAK 789

Query: 601  KCVFVGYDNQRKGWRCCDPTSGKYYTSRDNMGEQTT--------QIQSNVDASE------ 660
            +C+FVGYD+ RKGWRCCDPT+GK +TSR+ + ++ +        +I  + D  E      
Sbjct: 790  RCIFVGYDDARKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKEEIPESPDVEEVIEEER 849

Query: 661  -----NPSDIDIDKQEVTQSS--------ESDKNETTHQQLRRSNRIRRPNPKYANAAIV 720
                  PS+ +      T+S         E  + E   Q+LRRS R R+PNP+YANAA+ 
Sbjct: 850  DQKLETPSEGERSSPSKTKSPWKTGIHQPEEPQTEEHDQELRRSTRPRKPNPRYANAALA 909

Query: 721  EDRV-YEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRR 780
            ++ +  EP +YEEA++   WQKAMEEEI AL+ NQTW+LVP+  D+KP+SCKWVYK+K R
Sbjct: 910  DESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKPISCKWVYKVKTR 969

Query: 781  PDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNA 840
             DGSIERYKARLVARGFSQ+YGLDY+ETFSPVAKITTVRVLLALAASK W+LWQMDVKNA
Sbjct: 970  TDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASKSWELWQMDVKNA 1029

Query: 841  FLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVA 900
            FLHGELD+EIYM QPKGFES   P +VCKL+KALYGLKQAPRAWYGKI EFL  +G+ VA
Sbjct: 1030 FLHGELDKEIYMEQPKGFESKKYPEHVCKLKKALYGLKQAPRAWYGKIGEFLVHNGFKVA 1089

Query: 901  HADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGL 960
             +DSSLF+  +EG L IVLVYVDDLIITGD   EI +TRENLS+RFQMKELGEL+HFLGL
Sbjct: 1090 PSDSSLFVMAKEGRLAIVLVYVDDLIITGDYSEEIERTRENLSVRFQMKELGELRHFLGL 1149

Query: 961  EVDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLV 1020
            EV+ T  G+FL QQKY +D+L+++ ML+CK +STPM+ N ++   +GK L D T YRQLV
Sbjct: 1150 EVEHTKNGIFLGQQKYAKDLLKRYGMLDCKPISTPMDPNTRLQEDKGKNLEDATMYRQLV 1209

Query: 1021 GSLIYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKL 1080
            GSLIYLTL+RPDISYAVGV SRYM +PKKPHLDA RRILRY+KGT++YG+LYK++K+C++
Sbjct: 1210 GSLIYLTLSRPDISYAVGVASRYMSTPKKPHLDAIRRILRYVKGTLNYGILYKKTKECQV 1269

Query: 1081 VGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQEST 1123
            +GYCDADYAGD D  R TTGY+F  GSG I+WCSKRQPTV+LS TEAEYR+AA AAQEST
Sbjct: 1270 IGYCDADYAGDCDTRRSTTGYLFSLGSGAITWCSKRQPTVALSSTEAEYRSAAAAAQEST 1329

[Close]
BLAST of CmoCh18G003620 vs. TrEMBL
Match: I1IA27_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 1442.6 bits (3733), Expect = 0.0e+00
Identity = 740/1234 (59.97%), Postives = 901/1234 (73.01%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNR---------------PSTRRGYNGDKRRSHQGT 60
            +AK+MG  T+K EE AL+T +   + +               P  R   +G  +R  QG 
Sbjct: 190  LAKKMGSITIKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGGDQRERQG- 249

Query: 61   AQPERAEKNDNKS------------------FQRTRFGGICYNCGKKGHMSRDCWSRKKS 120
              P+  EKN  +                   F R    G C NCGKKGH++R+C   ++ 
Sbjct: 250  --PKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDG-CSNCGKKGHLTRECRYPRRR 309

Query: 121  IENNVAISKKK---------IEDEWDAEV------------------LCPIEEDEL---- 180
             E NVA +K+K          E+EWDAE                      ++E+EL    
Sbjct: 310  YEGNVATTKEKEEITLEASMSEEEWDAEAGYSQEVDIEDLEEDMEAPAFAMDEEELEEDM 369

Query: 181  -------------------ALMATMEDHINYENDWIVDSGCSNHMTGDQRKLQDKKEYKG 240
                               AL A  +  INY++DWIVDSGCSN+MT D  KLQD  EYKG
Sbjct: 370  EPPVFARDEEELEEDMEAPALAAIKDPKINYKDDWIVDSGCSNYMTNDDNKLQDMTEYKG 429

Query: 241  SRMVRTANNTQLSIAQIGNTTIMPGNKSDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVL 300
             +MV TANN++LSI+ +G T + P      + L  VYHVPG+KKNLLSV QLT  G YVL
Sbjct: 430  GKMVLTANNSKLSISHVGKTAV-PRYGPQQLQLERVYHVPGLKKNLLSVPQLTAEGKYVL 489

Query: 301  FGPEDVKVYQDVKIIGKPTIEGRRVESVYVLSAESAYVDKTRKNETTDLWHARLGHISYH 360
            FGP++V +++ +K+IG P +EG++ +S++VLSAESAYVDKTRKNET DLWHARLGH+SYH
Sbjct: 490  FGPQEVAIFRRLKVIGTPIMEGKKRDSLFVLSAESAYVDKTRKNETADLWHARLGHVSYH 549

Query: 361  KLKLIMEKSMLKGLPQLEVKTDVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFGPV 420
            KLK +MEK ++KGLP L+++TD+VCAGCQYGKAHQLPYKES  ++K PLEL+HSD+FGPV
Sbjct: 550  KLKEMMEKHVVKGLPDLDIRTDMVCAGCQYGKAHQLPYKESQHQSKVPLELIHSDVFGPV 609

Query: 421  KQASISGMRYMVTFIDDYSRYVWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNG 480
            KQ S+ GMRYMVTFI+D+SRYVW++FMKEKS+TF KF+EFK M+EGE+  KIRCLR+DNG
Sbjct: 610  KQISLGGMRYMVTFINDFSRYVWVYFMKEKSETFMKFKEFKDMIEGELEYKIRCLRTDNG 669

Query: 481  GEYTSDEFDQYLHECGIRRQFTCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 540
             EY S+EF  YL +  I+RQ TC NTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE
Sbjct: 670  REYLSNEFTIYLKKNKIKRQLTCPNTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 729

Query: 541  AMRTAAHVINKLPQPKLGFVSPFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAV 600
             MRTAAHVINKLPQ +LGF SP E LW MKP IS+ +VFGCVCY+FVPDHLR+KF+KKA 
Sbjct: 730  CMRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAK 789

Query: 601  KCVFVGYDNQRKGWRCCDPTSGKYYTSRDNMGEQTT--------QIQSNVDASE------ 660
            +C+FVGYD+ RKGWRCCDPT+GK + SR+ + ++ +        +I  + D  E      
Sbjct: 790  RCIFVGYDDARKGWRCCDPTTGKCHISRNIVFDEASSWWSPKKEEIPESPDVEEVIEEER 849

Query: 661  -----NPSDIDIDKQEVTQSS--------ESDKNETTHQQLRRSNRIRRPNPKYANAAIV 720
                  PS+ +      T+S         E  + E   Q+LRRS R R+PNP+YANAA+ 
Sbjct: 850  DQKLETPSEGERSSPSKTKSPWKTGIHQPEEPQTEEHDQELRRSTRPRKPNPRYANAALA 909

Query: 721  EDRV-YEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRR 780
            ++ +  EP +YEEA++   WQKAMEEEI AL+ NQTW+LVP+  D+KP+SCKWVYK+K R
Sbjct: 910  DESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKPISCKWVYKVKTR 969

Query: 781  PDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNA 840
             DGSIERYKARLVARGFSQ+YGLDY+ETFSPVAKITTVRVLLALAASK W+LWQMDVKNA
Sbjct: 970  TDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASKSWELWQMDVKNA 1029

Query: 841  FLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVA 900
            FLHGELD+EIYM QPKGFES   P +VCKL+KALYGLKQAPRAWYGKI EFL  +G+ VA
Sbjct: 1030 FLHGELDKEIYMEQPKGFESKKYPEHVCKLKKALYGLKQAPRAWYGKIGEFLVHNGFKVA 1089

Query: 901  HADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGL 960
             +DSSLF+  +EG L IVLVYVDDLIITGD   EI +TRENLS+RFQMKELGEL+HFLGL
Sbjct: 1090 PSDSSLFVMAKEGRLAIVLVYVDDLIITGDYSEEIERTRENLSVRFQMKELGELRHFLGL 1149

Query: 961  EVDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLV 1020
            EV+ T  G+FL QQKY +D+L+++ ML+CK +STPM+ NA++  H+GK L D T YRQLV
Sbjct: 1150 EVEHTKNGIFLGQQKYAKDLLKRYGMLDCKPISTPMDPNARLQEHKGKNLEDATMYRQLV 1209

Query: 1021 GSLIYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKL 1080
            GSLIYLTL+RPDISYAVGV SRYM +PKKPHLDA RRILRY+KGT++YG+LYK++K+C++
Sbjct: 1210 GSLIYLTLSRPDISYAVGVASRYMSTPKKPHLDAIRRILRYVKGTLNYGILYKKTKECQV 1269

Query: 1081 VGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQEST 1123
            +GYCDADYAGD D  R TTGY+F  GSG I+WCSKRQPTV+LS TEAEYR+AA AAQEST
Sbjct: 1270 IGYCDADYAGDCDTRRSTTGYLFSLGSGAITWCSKRQPTVALSSTEAEYRSAAAAAQEST 1329

[Close]
BLAST of CmoCh18G003620 vs. TrEMBL
Match: I1H466_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 1439.1 bits (3724), Expect = 0.0e+00
Identity = 738/1234 (59.81%), Postives = 899/1234 (72.85%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNR---------------PSTRRGYNGDKRRSHQGT 60
            +AK+MG  T+K EE AL+T +   + +               P  R   +G  +R  QG 
Sbjct: 190  LAKKMGSITIKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGGDQRERQG- 249

Query: 61   AQPERAEKNDNKS------------------FQRTRFGGICYNCGKKGHMSRDCWSRKKS 120
              P+  EKN  +                   F R    G C NC KKGH++R+C   ++ 
Sbjct: 250  --PKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDG-CSNCDKKGHLTRECRYPRRR 309

Query: 121  IENNVAISKKK---------IEDEWDAEV------------------LCPIEEDEL---- 180
             E NVA +K+K          E+EWDAE                      ++E+EL    
Sbjct: 310  YEGNVATTKEKEEITLEVSMSEEEWDAEAGYSQEVDIEDLEEDMEVPALAMDEEELEEDM 369

Query: 181  -------------------ALMATMEDHINYENDWIVDSGCSNHMTGDQRKLQDKKEYKG 240
                               AL A  +  INY++DWIVDSGCSNHMT D  KLQD  EYKG
Sbjct: 370  EPPVFATDEEELEKDMEASALAAIKDPKINYKDDWIVDSGCSNHMTNDDNKLQDMTEYKG 429

Query: 241  SRMVRTANNTQLSIAQIGNTTIMPGNKSDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVL 300
             +MV TANN++LSI+ +G T + P      + L  VYHVPG+KKNLLSV QLT  G YVL
Sbjct: 430  GKMVLTANNSKLSISHVGKTAV-PRYGPQQLQLERVYHVPGLKKNLLSVPQLTAEGKYVL 489

Query: 301  FGPEDVKVYQDVKIIGKPTIEGRRVESVYVLSAESAYVDKTRKNETTDLWHARLGHISYH 360
            FGP++V +++ +K+IG P +EG++ +S++VLSAESAYVDKTRKNET DLWHARLGH+SYH
Sbjct: 490  FGPQEVAIFRRLKVIGTPIMEGKKRDSLFVLSAESAYVDKTRKNETADLWHARLGHVSYH 549

Query: 361  KLKLIMEKSMLKGLPQLEVKTDVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFGPV 420
            KLK +MEK ++KGLP L+++TD+VCAGCQYGKAHQLPYKES  ++K PLEL+HSD+FGPV
Sbjct: 550  KLKEMMEKHVVKGLPDLDIRTDMVCAGCQYGKAHQLPYKESQHQSKVPLELIHSDVFGPV 609

Query: 421  KQASISGMRYMVTFIDDYSRYVWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNG 480
            KQ S+ GMRYMVTFIDD+SRYVW++FMKEKS+TF KF+EFK M+EGE+  KIRCLR+DNG
Sbjct: 610  KQISLGGMRYMVTFIDDFSRYVWVYFMKEKSETFMKFKEFKDMIEGELEYKIRCLRTDNG 669

Query: 481  GEYTSDEFDQYLHECGIRRQFTCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 540
             EY S+EF  YL +  I+RQ TC NTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE
Sbjct: 670  REYLSNEFTIYLKKNKIKRQLTCPNTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 729

Query: 541  AMRTAAHVINKLPQPKLGFVSPFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAV 600
             MRTAAHVINKLPQ +LGF SP E LW MKP IS+ +VFGCVCY+FVPDHLR+KF+KKA 
Sbjct: 730  CMRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAK 789

Query: 601  KCVFVGYDNQRKGWRCCDPTSGKYYTSRDNMGEQTT--------QIQSNVDASE------ 660
            +C+FVGYD+ +KGWRCCDPT+GK +TSR+ + ++ +        +I  + D  E      
Sbjct: 790  RCIFVGYDDAQKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKEEIPESPDVEEVIEEER 849

Query: 661  -----NPSDIDIDKQEVTQSS--------ESDKNETTHQQLRRSNRIRRPNPKYANAAIV 720
                  PS+ +      T+S         E  + E   Q+LRRS R R+PNP+YANAA+ 
Sbjct: 850  DQKLETPSEGERSSPSKTKSPWKTGIHQPEEPQTEEHDQELRRSTRPRKPNPRYANAALA 909

Query: 721  EDRV-YEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRR 780
            ++ +  EP +YEEA++   WQKAMEEEI AL+ NQTW+LVP+  D+KP+SCKWVYK+K R
Sbjct: 910  DESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKPISCKWVYKVKTR 969

Query: 781  PDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNA 840
             DGSIERYKARLVARGFSQ+YGLDY+ETFSPVAKITTVRVLLALAASK W+LWQMDVKNA
Sbjct: 970  TDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASKSWELWQMDVKNA 1029

Query: 841  FLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVA 900
            FLHGELD+EIYM QPKGFES   P +VCKL+KALYGLKQAPRAWYGKI EFL  +G+ VA
Sbjct: 1030 FLHGELDKEIYMEQPKGFESKKYPEHVCKLKKALYGLKQAPRAWYGKIGEFLVHNGFKVA 1089

Query: 901  HADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGL 960
             +DSSLF+  +EG L IVLVYVDDLIITGD   EI +TRENLS+RFQMKELGEL+HFLGL
Sbjct: 1090 PSDSSLFVMAKEGRLAIVLVYVDDLIITGDYSEEIERTRENLSVRFQMKELGELRHFLGL 1149

Query: 961  EVDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLV 1020
            EV+ T  G+FL QQKY +D+L+++ ML+CK +STPM+ NA++   +GK L D T YRQLV
Sbjct: 1150 EVEHTKNGIFLGQQKYAKDLLKRYGMLDCKPISTPMDPNARLQEDKGKNLEDATMYRQLV 1209

Query: 1021 GSLIYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKL 1080
            GSLIYLTL+RPDISYAVGV SRYM +PKKPHLDA RRILRY+KGT++YG+LYK++K+C++
Sbjct: 1210 GSLIYLTLSRPDISYAVGVASRYMSTPKKPHLDAIRRILRYVKGTLNYGILYKKTKECQV 1269

Query: 1081 VGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQEST 1123
            +GYCDADYAGD D  R TTGY+F  GSG I+WCSKRQPTV+LS TEAEYR+AA AAQEST
Sbjct: 1270 IGYCDADYAGDCDTRRSTTGYLFSLGSGAITWCSKRQPTVALSSTEAEYRSAAAAAQEST 1329

[Close]
BLAST of CmoCh18G003620 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 405.6 bits (1041), Expect = 1.0e-112
Identity = 225/578 (38.93%), Postives = 335/578 (57.96%), Query Frame = 1 

Query: 556  SNVDASENPSDIDIDKQEVTQSSESDKN-ETTHQQLRRSNRIR----------------- 615
            S+ DAS + S IDI      Q+   + +  T+H++ R+   ++                 
Sbjct: 3    SDADASTSSSSIDIMPSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQ 62

Query: 616  -----RPNPKYANAAIVEDRVYEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLG 675
                 + +P Y +  +   +  EP TY EA +  VW  AM++EI A+E   TWE+     
Sbjct: 63   FLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPP 122

Query: 676  DIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLAL 735
            + KP+ CKWVYKIK   DG+IERYKARLVA+G++QQ G+D+ ETFSPV K+T+V+++LA+
Sbjct: 123  NKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAI 182

Query: 736  AASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAAN----PNYVCKLRKALYGLKQA 795
            +A  ++ L Q+D+ NAFL+G+LD EIYM  P G+ +       PN VC L+K++YGLKQA
Sbjct: 183  SAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQA 242

Query: 796  PRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRE 855
             R W+ K +  L   G+  +H+D + F+K        VLVYVDD+II  +++  + + + 
Sbjct: 243  SRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKS 302

Query: 856  NLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPMEINA 915
             L   F++++LG LK+FLGLE+ R+  G+ +CQ+KY  D+L +  +L CK  S PM+ + 
Sbjct: 303  QLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSV 362

Query: 916  KICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILR 975
               AH G +  D   YR+L+G L+YL +TR DIS+AV  +S++ ++P+  H  A  +IL 
Sbjct: 363  TFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILH 422

Query: 976  YIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTV 1035
            YIKGT+  GL Y    + +L  + DA +    D  R T GY    G+  ISW SK+Q  V
Sbjct: 423  YIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVV 482

Query: 1036 SLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQSAIRLAENPVFRARTK 1095
            S S  EAEYRA + A  E  WL     +L   +  P  L CDN +AI +A N VF  RTK
Sbjct: 483  SKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTK 542

Query: 1096 LVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLN 1107
             +E   H +RE+ + +       +  D+  D FT+ L+
Sbjct: 543  HIESDCHSVRERSVYQATLSYSFQAYDE-QDGFTEYLS 579

[Close]
BLAST of CmoCh18G003620 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 186.8 bits (473), Expect = 7.3e-47
Identity = 96/224 (42.86%), Postives = 132/224 (58.93%), Query Frame = 1 

Query: 806  VLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYT 865
            +L+YVDD+++TG     +      LS  F MK+LG + +FLG+++     GLFL Q KY 
Sbjct: 3    LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 866  RDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAV 925
              +L    ML+CK +STP+ +         K   D + +R +VG+L YLTLTRPDISYAV
Sbjct: 63   EQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISYAV 122

Query: 926  GVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRP 985
             ++ + M  P     D  +R+LRY+KGTI +GL   ++    +  +CD+D+AG     R 
Sbjct: 123  NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 986  TTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTW 1030
            TTG+    G   ISW +KRQPTVS S TE EYRA A  A E TW
Sbjct: 183  TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh18G003620 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-19
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1 

Query: 596 IRRPNPKYANAAIVEDRVYEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLGDIK 655
           I + NPKY+   I      EP++   A ++  W +AM+EE+ AL  N+TW LVP   +  
Sbjct: 9   INKLNPKYS-LTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQN 68

Query: 656 PVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALA 714
            + CKWV+K K   DG+++R KARLVA+GF Q+ G+ + ET+SPV +  T+R +L +A
Sbjct: 69  ILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CmoCh18G003620 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-11
Identity = 28/78 (35.90%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 912 IYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGY 971
           +YLT+TRPD+++AV  +S++  + +   + A  ++L Y+KGT+  GL Y  + D +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 972 CDADYAGDHDAWRPTTGY 990
            D+D+A   D  R  TG+
Sbjct: 61  ADSDWASCPDTRRSVTGF 78

[Close]
BLAST of CmoCh18G003620 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1 

Query: 236 IEGRRVESVYVLSAE----SAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLP 295
           ++G R +S+Y+L        + + +T K+ET  LWH+RL H+S   ++L+++K  L    
Sbjct: 39  LKGNRHDSLYILQGSVETGESNLAETAKDETR-LWHSRLAHMSQRGMELLVKKGFLDSSK 98

Query: 296 QLEVKTDVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFG 335
              +K    C  C YGK H++ +       K PL+ VHSDL+G
Sbjct: 99  VSSLK---FCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

[Close]
BLAST of CmoCh18G003620 vs. NCBI nr
Match: gi|147794801|emb|CAN71427.1| (hypothetical protein VITISV_027864 [Vitis vinifera])

HSP 1 Score: 1453.7 bits (3762), Expect = 0.0e+00
Identity = 754/1158 (65.11%), Postives = 872/1158 (75.30%), Query Frame = 1 

Query: 1    MAKQMGGFTLKGEE-ALYTSESQSNNRPST--RRGYNGDKRRSHQGTAQPERAEKNDNKS 60
            +AKQMGG +LKGEE ALY  +   N+   T  R   N DK +  QG  +  R E +    
Sbjct: 192  LAKQMGGVSLKGEEEALYAHKGGWNSXQHTVRRTKKNEDKAKCSQGE-RSARVEGDSKNP 251

Query: 61   FQRTRFGGICYNCGKKGHMSRDCWSRKKSIENNVAISKKKIEDEWDAEVLCPIEEDELAL 120
                +F G CYNC KKGHM++DCWS+K  +E+N   SK   EDEWDA+        E A 
Sbjct: 252  GTXKKFEGKCYNCXKKGHMAKDCWSKKGLVESNATTSKS--EDEWDAQAFFAAI-GESAF 311

Query: 121  MATMEDHINYENDWIVDSGCSNHMTGDQRKLQDKKEYKGSRMVRTANNTQLSIAQIGNTT 180
            +AT  + I+YE DWI+DSGCSNHMTGD+ KLQD  EYKG  MV TANN++L IA IGNT 
Sbjct: 312  IATTSEQIDYEKDWIIDSGCSNHMTGDKEKLQDLSEYKGRHMVVTANNSKLPIAHIGNTV 371

Query: 181  IMPGNKSDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVLFGPEDVKVYQDVKIIGKPTIE 240
            +     ++ VSL NVYHVPG+KKNLLSV+QLT+SG  VLFGP+DVKVY D++++ +P I+
Sbjct: 372  VSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSGHSVLFGPQDVKVYHDLEVMEEPVIK 431

Query: 241  GRRVESVYVLSAESAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLPQLEVKT 300
            GRR+ESVYV+SAE+AYVDKTRKNET DLWH RL HISY KL ++M+KSMLKGLPQLEV+ 
Sbjct: 432  GRRLESVYVMSAETAYVDKTRKNETADLWHMRLSHISYSKLTMMMKKSMLKGLPQLEVRK 491

Query: 301  DVVCAGCQYGKAHQLPYKESSFKAKKPLELVHSDLFGPVKQASISGMRYMVTFIDDYSRY 360
              +CA CQYGKAHQLPY+ES +KAK PLEL+HSD+FGPVKQAS+SGM           +Y
Sbjct: 492  XTICAXCQYGKAHQLPYEESKWKAKGPLELIHSDVFGPVKQASLSGM-----------KY 551

Query: 361  VWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNGGEYTSDEFDQYLHECGIRRQF 420
            +  F      D FS+    +M                    +TS E  +Y         F
Sbjct: 552  MVTFI-----DDFSRRVYLQMSF------------------FTSSENXEYAIS------F 611

Query: 421  TCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAEAMRTAAHVINKLPQPKLGFVS 480
            TCANTPQQNGV ERKNRHLAE CRSMLHAKNVPG FWAE M+TAA VIN+LPQ +L F S
Sbjct: 612  TCANTPQQNGVXERKNRHLAEICRSMLHAKNVPGXFWAEXMKTAAFVINRLPQQRLNFSS 671

Query: 481  PFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAVKCVFVGYDNQRKGWRCCDPTS 540
            PFE LW++KPT+SYFRVFGCVCYVFVP+HLRSK DKKAV+CV VGYD+QRK WRCCDPT+
Sbjct: 672  PFEKLWNIKPTVSYFRVFGCVCYVFVPNHLRSKMDKKAVRCVLVGYDSQRKXWRCCDPTT 731

Query: 541  GKYYTSRDNMGE-----------------------QTTQIQSNVDASENPSDIDIDKQEV 600
            GK YTSR+ + +                       Q+ +IQ ++  +EN  D DI   + 
Sbjct: 732  GKCYTSRNVVFDESSSWWSSEKEILXDSBVFKDELQSARIQLSLGEAENAXDGDIG-DDX 791

Query: 601  TQSSESDKNETTHQQLRRSNRIRRPNPKYANAAIVED-RVYEPETYEEASQNSVWQKAME 660
            TQS      +T         R ++PNPKYAN AIVED    EP T+ EA QNS W KAM 
Sbjct: 792  TQSPW----QTGVHGQPSEERTKKPNPKYANVAIVEDANAKEPXTFAEAFQNSDWSKAMX 851

Query: 661  EEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDY 720
            EEI AL+ NQTWELVP+  D++P SCKWVYKIKRR DGSIER+KA LVARGFSQQYGLDY
Sbjct: 852  EEIAALKRNQTWELVPKPRDVEPXSCKWVYKIKRRTDGSIERHKAXLVARGFSQQYGLDY 911

Query: 721  DETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAANPN 780
            DETFSPV K+TTVRVLLALAA+KDW LWQMDVKNAFLHGELDREIYMNQP GF+S  +P 
Sbjct: 912  DETFSPVXKLTTVRVLLALAANKDWDLWQMDVKNAFLHGELDREIYMNQPMGFQSQGHPE 971

Query: 781  YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLTIVLVYVDDL 840
            YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSV  ADSSLF+K   G L IVLVYVDDL
Sbjct: 972  YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVTPADSSLFVKANGGKLAIVLVYVDDL 1031

Query: 841  IITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYTRDMLQKFN 900
            IITGDD  EI++T+ENLS+RF+MKELG+LKHFLGLEVDRT+EG+FLCQQKY +D+L+KF 
Sbjct: 1032 IITGDDVEEIFRTKENLSVRFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAKDLLKKFG 1091

Query: 901  MLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAVGVMSRYMQ 960
            MLECK +STPME NAK+C HEGK+L D T YRQLVGSL+YLTLT PDISYAVGVMSRYMQ
Sbjct: 1092 MLECKPISTPMEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTLTXPDISYAVGVMSRYMQ 1151

Query: 961  SPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFKF 1020
            +PKKPHL+A RRILR++KGTIDYGLLYK+ +DCKLVGYCDADYAGDHD    TTGYVF  
Sbjct: 1152 NPKKPHLEAVRRILRHVKGTIDYGLLYKKXEDCKLVGYCDADYAGDHDTRXSTTGYVFML 1211

Query: 1021 GSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQS 1080
            GSG ISWCSKRQPTVSLS TEAEYRAAA A QES WL  LM DLHQ +DY + L CDNQS
Sbjct: 1212 GSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYAVPLYCDNQS 1271

Query: 1081 AIRLAENPVFRARTKLVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLNTSKHESF 1132
            A+RLAENPVF ARTK VEVHYHFIREKVLKEE+E+ QIK++DQVADLFTKGL+ SK ESF
Sbjct: 1272 AVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTKGLSGSKFESF 1300

[Close]
BLAST of CmoCh18G003620 vs. NCBI nr
Match: gi|147817226|emb|CAN75363.1| (hypothetical protein VITISV_026292 [Vitis vinifera])

HSP 1 Score: 993.8 bits (2568), Expect = 2.4e-286
Identity = 505/736 (68.61%), Postives = 571/736 (77.58%), Query Frame = 1 

Query: 337  KQASISGMRYMVTFIDDYSRYVWIFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNG 396
            KQAS+SGM+YMVTFI+D+S YVW++FMKEKS+TFSK++EFK M E +V  +IRCLR+DNG
Sbjct: 461  KQASLSGMKYMVTFINDFSNYVWVYFMKEKSETFSKYKEFKEMTEVKVDKRIRCLRTDNG 520

Query: 397  GEYTSDEFDQYLHECGIRRQFTCANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAE 456
            GEYTSDEF  +L EC +R QFTCANTPQQN VAERKNRHLAE CRSMLHAKNVP RFWAE
Sbjct: 521  GEYTSDEFFYFLRECRVRHQFTCANTPQQNSVAERKNRHLAEICRSMLHAKNVPRRFWAE 580

Query: 457  AMRTAAHVINKLPQPKLGFVSPFEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAV 516
            AM+T A VIN+LPQ KL F SPFE LW++KPTISYFRVFGCVCYVFVP+HLRSK DKK +
Sbjct: 581  AMKTVAFVINRLPQQKLNFSSPFEKLWNIKPTISYFRVFGCVCYVFVPNHLRSKMDKKEI 640

Query: 517  KCVFVGYDNQRKGWRCCDPTSGKYYTSRDNMGEQTTQIQSNVDASENPSDIDIDKQEVTQ 576
                              P S  +   +D +  Q+ +IQ ++   EN ++ DI   E   
Sbjct: 641  L-----------------PDSDVF---KDEL--QSARIQLSLGEXENAANGDIXDDETQS 700

Query: 577  ----------SSESDKNETTHQ-QLRRSNRIRRPNPKYANAAIVED-RVYEPETYEEASQ 636
                      S E + +ET     LRRS R ++PNPKYAN AIVED    EPET+ EA Q
Sbjct: 701  PWQTGVHGQXSEEGEPSETEAPIPLRRSARTKKPNPKYANVAIVEDANAKEPETFAEAFQ 760

Query: 637  NSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARG 696
            N  W KAM+EEI AL+ NQTWELVP+  D++P+SCKWVYKIKRR DG IER+KARLVARG
Sbjct: 761  NPDWSKAMKEEIAALKRNQTWELVPKXRDVEPISCKWVYKIKRRTDGLIERHKARLVARG 820

Query: 697  FSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPK 756
            FSQQYGLDYDETFSPVAK+TTVRVLLALAA+KDW L QMDVKNAFLHGELDREIYMNQP 
Sbjct: 821  FSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELDREIYMNQPM 880

Query: 757  GFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLT 816
            GF+S  +P YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYS+  ADSSLF+K   G L 
Sbjct: 881  GFQSQGHPKYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSITPADSSLFVKANGGKLA 940

Query: 817  IVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKY 876
            IVL Y                  ENLS+RF+MKELG+LKHFLGLEVDRT EG+FLCQQKY
Sbjct: 941  IVLAY------------------ENLSVRFEMKELGQLKHFLGLEVDRTHEGIFLCQQKY 1000

Query: 877  TRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYA 936
             +D+L+KF MLECK +STPME NAK+C HEGK+L D T YRQLVGSL+YLT TR DISYA
Sbjct: 1001 AKDLLKKFGMLECKPISTPMEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTFTRTDISYA 1060

Query: 937  VGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWR 996
            VGVMSRYMQ+PKKPHL+A RRILR++KGTIDYGLLYK+ +D KLVGYCDADY GDHD  R
Sbjct: 1061 VGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKGEDYKLVGYCDADYVGDHDTRR 1120

Query: 997  PTTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYP 1056
             TTGYVF  GS  ISWCSKRQPTVSLS  E EYRAA  AAQESTWL  LM DLHQ +DY 
Sbjct: 1121 STTGYVFMLGSRAISWCSKRQPTVSLSTMEXEYRAAPMAAQESTWLIRLMNDLHQXVDYA 1156

Query: 1057 ISLLCDNQSAIRLAEN 1061
              L CDNQSA+RLAEN
Sbjct: 1181 XPLYCDNQSAVRLAEN 1156

[Close]
BLAST of CmoCh18G003620 vs. NCBI nr
Match: gi|147798853|emb|CAN61340.1| (hypothetical protein VITISV_007301 [Vitis vinifera])

HSP 1 Score: 818.5 bits (2113), Expect = 1.4e-233
Identity = 416/583 (71.36%), Postives = 467/583 (80.10%), Query Frame = 1 

Query: 561  SENPSDIDIDKQEVTQ----------SSESDKNETTHQ-QLRRSNRIRRPNPKYANAAIV 620
            +EN +D DI+  E             S E + +ET     LRRS R ++PNPKYAN AIV
Sbjct: 408  AENVADGDIEDDETQSPWQTGVHGQPSEEGEPSETEAPIPLRRSARTKKPNPKYANVAIV 467

Query: 621  ED-RVYEPETYEEASQNSVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRR 680
            ED    EPET+ EA QN  W KA++EEI AL+ NQTWELVP+  D++P+SCKWVYKIKRR
Sbjct: 468  EDANAKEPETFAEAFQNPDWTKAIKEEIAALKQNQTWELVPKPRDVEPISCKWVYKIKRR 527

Query: 681  PDGSIERYKARLVARGFSQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNA 740
             DGSIER+KARLVARGFSQQYGLDYDETFSPVAK+TTVRVLLALAA+KDW LWQMDVKNA
Sbjct: 528  TDGSIERHKARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLWQMDVKNA 587

Query: 741  FLHGELDREIYMNQPKGFESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVA 800
            FLHGELDREIYMNQP GF S  +P YVCKLRKALYGLKQAPRAWY               
Sbjct: 588  FLHGELDREIYMNQPXGFXSQGHPEYVCKLRKALYGLKQAPRAWY--------------- 647

Query: 801  HADSSLFIKEREGNLTIVLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGL 860
              DSSLF+K   G L IVLVYVDDLIIT DD  EI++T ENLS+RF+MKELG+LKHFLGL
Sbjct: 648  --DSSLFVKANGGKLVIVLVYVDDLIITRDDVEEIFRTEENLSVRFEMKELGQLKHFLGL 707

Query: 861  EVDRTDEGLFLCQQKYTRDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLV 920
            EVD T EG+FLCQQKY +D+L+KF MLECK +STPME NAK+C HEGK+L D T YRQLV
Sbjct: 708  EVDCTHEGIFLCQQKYAKDLLKKFGMLECKSISTPMEPNAKMCEHEGKDLKDATMYRQLV 767

Query: 921  GSLIYLTLTRPDISYAVGVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKL 980
            GSL+YLTLTRPDISYAVGVMSRYMQ+PKKPHL+A RRILR++KGTIDYGLLYK+ +DCKL
Sbjct: 768  GSLVYLTLTRPDISYAVGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKGEDCKL 827

Query: 981  VGYCDADYAGDHDAWRPTTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQEST 1040
            VGYCDADYAGDHD  R TTGYVF  GSG ISWCSKRQPTVSL  TEAEYRAAA AAQEST
Sbjct: 828  VGYCDADYAGDHDTRRSTTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQEST 887

Query: 1041 WLKLLMEDLHQKIDYPISLLCDNQSAIRLAENPVFRARTKLVEVHYHFIREKVLKEEIEM 1100
            WL  LM DLHQ +DY + L CDNQSA+RLAENPVF ARTK VEVHYHFIREKVL+EE+E+
Sbjct: 888  WLIRLMNDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVEL 947

Query: 1101 QQIKTDDQVADLFTKGLNTSKHESFRCQLNMMQRMRTSAEGEC 1132
            +QIK+ DQVADLFTKGL+ SK E F  QL M++ +    EGEC
Sbjct: 948  KQIKSKDQVADLFTKGLSGSKFECFCHQLGMVKILEADVEGEC 973

[Close]
BLAST of CmoCh18G003620 vs. NCBI nr
Match: gi|47824985|gb|AAT38758.1| (Putative gag-pol polyprotein, identical [Solanum demissum])

HSP 1 Score: 806.2 bits (2081), Expect = 7.2e-230
Identity = 463/1147 (40.37%), Postives = 677/1147 (59.02%), Query Frame = 1 

Query: 4    QMGGFTLKGEEALYTSESQSNNRPSTRRGYNGDKRRSHQGTAQPERAEKNDNKSFQRTRF 63
            Q   F +KGE +       S  R   R  + G + R   G  + +  E    KS  + R+
Sbjct: 204  QEKAFQVKGEFSYKGKAENSAGRGHGRGNFRG-RGRGGSGRGRNQVGEFRQYKSNIQCRY 263

Query: 64   GGICYNCGKKGHMSRDCWSRKKSIENNVAISKKKIEDEWDAEVLCPIEEDELALMATMED 123
                  C K GH   DCW+++K             +++ DA     +EE+    MA+ + 
Sbjct: 264  ------CKKFGHKEVDCWTKQK-------------DEQKDANFTQNVEEESKLFMASSQI 323

Query: 124  HINYENDWIVDSGCSNHMTGDQRKLQDKKEYKGSRMVRTANNTQLSIAQIGNTTIMPGNK 183
              +    W +DSGCSNHM+  +   +D  E + S  VR  ++ Q+ I   G   I    +
Sbjct: 324  TESANAVWFIDSGCSNHMSSSKSLFRDLDESQKSE-VRLGDDKQVHIEGKGTVEIKTV-Q 383

Query: 184  SDTVSLHNVYHVPGIKKNLLSVSQLTTSGSYVLFGPE--DVKVYQDVKIIGKPTIEGRRV 243
             +   L++V +VP +  NLLSV QL TSG  V+F     D+K  +  + I +  +   ++
Sbjct: 384  GNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKM 443

Query: 244  ESVYVLSAESAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLPQLEVKTDVVC 303
              + + +  ++ +    KNET +LWH R GH++ + LKL+++K M+ GLP   +K   +C
Sbjct: 444  FPLDISNVGNSALVVKEKNET-NLWHLRYGHLNVNWLKLLVQKDMVIGLPN--IKELDLC 503

Query: 304  AGCQYGKAHQLPYKES-SFKAKKPLELVHSDLFGPVKQASISGMRYMVTFIDDYSRYVWI 363
             GC YGK  +  +    S++A   LELVH+DL GP+K  S+ G RY + F DDYSR+ W+
Sbjct: 504  EGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWV 563

Query: 364  FFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNGGEYTSDEFDQYLHECGIRRQFTCA 423
            +F+K KS+TF  F++FK  VE + G KI+ LR+D GGE+ S++F+ +  E GIRR+ T  
Sbjct: 564  YFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAP 623

Query: 424  NTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAEAMRTAAHVINKLPQPKLGFVSPFE 483
             TP+QNGVAERKNR + E  RS L AK +P  FW EA+ T  + +N  P   +   +P E
Sbjct: 624  YTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAVATVVYFLNISPTKDVWNTTPLE 683

Query: 484  ILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAVKCVFVGYDNQRKGWRCCDPTSGKY 543
                 KP +S+ R+FGC+ Y  V  H  SK D+K+ KC+FVGY  Q K +R  +P SGK 
Sbjct: 684  AWNGKKPRVSHLRIFGCIAYALVNFH--SKLDEKSTKCIFVGYSLQSKAYRLYNPISGKV 743

Query: 544  YTSRD-----------NMGEQTTQIQ-------SNVDASENPSDIDIDKQEVTQSSES-- 603
              SR+           N G   + IQ       S VD   +P+   +     +  + S  
Sbjct: 744  IISRNVVFNEDVSWNFNSGNMMSNIQLLPTDEESAVDFGNSPNSSPVSSSVSSPIAPSTT 803

Query: 604  ---DKNETTHQQLRRSNRIRRPNPKYANAAIVEDR----VYEPETYEEASQNSVWQKAME 663
               D++      LRRS R ++PNPKY+N      +    V +P  YEEA + S W+ AM 
Sbjct: 804  VAPDESSVEPIPLRRSTREKKPNPKYSNTVNTSCQFALLVSDPICYEEAVEQSEWKNAMI 863

Query: 664  EEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDY 723
            EEI A+E N TWELV        +  KWV++ K   DGSI+++KARLVA+G+SQQ G+D+
Sbjct: 864  EEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDF 923

Query: 724  DETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKGFESAANPN 783
            DETFSPVA+  TVRV+LALAA     ++Q DVK+AFL+G+L+ E+Y++QP+GF    N N
Sbjct: 924  DETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNEN 983

Query: 784  YVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKER-EGNLTIVLVYVDD 843
             V KLRKALYGLKQAPRAWY KI  F   SG+  +  + +L++K++      +V +YVDD
Sbjct: 984  KVYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDD 1043

Query: 844  LIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYTRDMLQKF 903
            +I  G  +  +   + N+   F+M +LG LK+FLGLEV +  +G+F+ Q+KY  D+L+KF
Sbjct: 1044 MIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKF 1103

Query: 904  NMLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAVGVMSRYM 963
             M+ C+  +TPM IN K+   +G E  +   +R LVG L YLT TRPDI+++V V+SR++
Sbjct: 1104 QMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFL 1163

Query: 964  QSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRPTTGYVFK 1023
            QSP K H  AA+R+LRY+ GT D+G+ Y ++ + +LVG+ D+DYAG  D  + T+G  F 
Sbjct: 1164 QSPTKQHFGAAKRVLRYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFS 1223

Query: 1024 FGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPISLLCDNQ 1083
            FGSG ++W SK+Q TV+LS +EAEY AA+ AA+++ WL+ L+ED   +      +  D++
Sbjct: 1224 FGSGVVTWSSKKQETVALSTSEAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSK 1283

Query: 1084 SAIRLAENPVFRARTKLVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGLNTSKHES 1120
            SAI +A+NP F  RTK ++V YHFIR  V    I ++   T++Q AD+FTK L  +KHE 
Sbjct: 1284 SAIAMAKNPSFHGRTKHIDVQYHFIRTLVADGRIVLKFCSTNEQAADIFTKSLPQAKHEY 1323

[Close]
BLAST of CmoCh18G003620 vs. NCBI nr
Match: gi|9294121|dbj|BAB01972.1| (copia-like retrotransposable element [Arabidopsis thaliana])

HSP 1 Score: 781.9 bits (2018), Expect = 1.5e-222
Identity = 432/1097 (39.38%), Postives = 659/1097 (60.07%), Query Frame = 1 

Query: 67   CYNCGKKGHMSRDCWSRKKSIENNVAISKKKIEDEWDAEVL-CPIEEDELALMATMEDHI 126
            CY C K+GH++RDC  RK     +++I + + E E +  +L   +EE E++ +       
Sbjct: 268  CYVCDKQGHIARDCKLRKGE-RAHLSIEESEDEKEDECHMLFSAVEEKEISTIG------ 327

Query: 127  NYENDWIVDSGCSNHMTGDQRKLQDKKEYKGSRMVRTANNTQLSIAQIGNTTIMPGNKSD 186
              E  W+VDSGC+NHM+ D R        K   ++R  N  ++     G+  +   NK D
Sbjct: 328  --EETWLVDSGCTNHMSKDVRHFIALDRSK-KIIIRIGNGGKVVSEGKGDIRVST-NKGD 387

Query: 187  TVSLHNVYHVPGIKKNLLSVSQLTTSGSYVLFGPEDVK-VYQDVKIIGKPTIE----GRR 246
             V + +V +VP + +NLLSVSQ+ ++G  V+F  ED K V QD+K  G+  ++     R 
Sbjct: 388  HV-IKDVLYVPELARNLLSVSQMISNGYRVIF--EDNKCVIQDLK--GRKILDIKMKDRS 447

Query: 247  VESVYVLSAESAYVDKTRKNETTDLWHARLGHISYHKLKLIMEKSMLKGLPQLEVKTDVV 306
               ++  S E  Y+    K E TDLWH R GH++Y K++ +    +++ LP+ EV   + 
Sbjct: 448  FPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGI- 507

Query: 307  CAGCQYGKAHQLPY-KESSFKAKKPLELVHSDLFGPVKQASISGMRYMVTFIDDYSRYVW 366
            CA C+ GK  +  + K+S     K LEL+HSD+ GP++  SI+G RY +TFIDD+SR  W
Sbjct: 508  CAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTW 567

Query: 367  IFFMKEKSDTFSKFQEFKMMVEGEVGAKIRCLRSDNGGEYTSDEFDQYLHECGIRRQFTC 426
            ++F+K KS+  +KF+ FK  VE +  ++I+ LR+D GGE+ S EF +   E GI  + T 
Sbjct: 568  VYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITT 627

Query: 427  ANTPQQNGVAERKNRHLAETCRSMLHAKNVPGRFWAEAMRTAAHVINKLPQPKLGF-VSP 486
              +PQQNGVAER+NR L E  RSM+  K +  +FWAEA+ T+ ++ N+LP   L   V+P
Sbjct: 628  PYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTP 687

Query: 487  FEILWDMKPTISYFRVFGCVCYVFVPDHLRSKFDKKAVKCVFVGYDNQRKGWRCC----- 546
             EI    KP++ + +VFGCVCY+ +PD  R K D KA + +FVGY N+ KG+R       
Sbjct: 688  MEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEE 747

Query: 547  ------DPTSGKYYT-SRDNMGEQTT----------------QIQSNVDASENP-SDIDI 606
                  D T  +  T S D  GE+                   + +++D   N  + + I
Sbjct: 748  KIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQEQGGGNDLNAHIDQVSNAFNQLHI 807

Query: 607  DKQEVTQSSESDKNETTHQQLRRSNRIRRPNPKYANAAIVEDRVY----EPETYEEASQN 666
              + V  S E  +     +  R  N +     +    A++ +       EP+  EEA ++
Sbjct: 808  SSRGVQNSHEEGEESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMMAEEPQALEEAMKD 867

Query: 667  SVWQKAMEEEIIALEHNQTWELVPRLGDIKPVSCKWVYKIKRRPDGSIERYKARLVARGF 726
              W +AM EE+  +E N+TWE+V R  D   +S KW++++K    G   + KARLVARGF
Sbjct: 868  EKWIEAMREELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGF 927

Query: 727  SQQYGLDYDETFSPVAKITTVRVLLALAASKDWKLWQMDVKNAFLHGELDREIYMNQPKG 786
            +Q+YG+DY ETF+PV++  T+R ++A+AA + WKL+QMDVK+AFL+G+L+ E+Y+ QP G
Sbjct: 928  TQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPG 987

Query: 787  FESAANPNYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVAHADSSLFIKEREGNLTI 846
            F        V KL KALYGLKQAPRAWYG+I  +  ++G+  +  D++ ++K+    + +
Sbjct: 988  FIEEKEEGKVLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEILV 1047

Query: 847  VLVYVDDLIITGDDEREIYQTRENLSIRFQMKELGELKHFLGLEVDRTDEGLFLCQQKYT 906
            V +YVDD+I+TG + +EI + +E +   F+M +LGEL +FLG+EV++ DEG+FL Q+ Y 
Sbjct: 1048 VSLYVDDIIVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYA 1107

Query: 907  RDMLQKFNMLECKQVSTPMEINAKICAHEGKELNDETTYRQLVGSLIYLTLTRPDISYAV 966
            + +L+KF M ECK VSTP+  + KI     ++L D T YR ++G ++YL  +RPDI YA 
Sbjct: 1108 KKLLKKFGMQECKSVSTPLTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCASRPDIMYAS 1167

Query: 967  GVMSRYMQSPKKPHLDAARRILRYIKGTIDYGLLYKRSKDCKLVGYCDADYAGDHDAWRP 1026
              +SRYM+SP K HL  A+R+LRY+KGT+ YG+ +KR +  +LVG+ D+D+AG  +  + 
Sbjct: 1168 SYLSRYMRSPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSDWAGSVEDKKS 1227

Query: 1027 TTGYVFKFGSGTISWCSKRQPTVSLSITEAEYRAAAGAAQESTWLKLLMEDLHQKIDYPI 1086
            T+GYVF  GSG   W S +Q TV+ S  EAEY A   AA ++ WL+ L+ ++  K +  I
Sbjct: 1228 TSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGI 1287

Query: 1087 SLLCDNQSAIRLAENPVFRARTKLVEVHYHFIREKVLKEEIEMQQIKTDDQVADLFTKGL 1122
             + CDN+SAI + +NPV   RTK +++ YHF+RE     +I+++    + Q+AD+ TK L
Sbjct: 1288 RIFCDNKSAIAIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPL 1347

The following BLAST results are available for this feature:
BLAST of CmoCh18G003620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC4.8e-11742.45Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME1.1e-10038.67Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH1.3e-4542.86Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST8.4e-4533.22Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
YH41B_YEAST4.8e-3225.32Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CmoCh18G003620 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AKW8_VITVI0.0e+0065.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1[more]
I1J3P8_BRADI0.0e+0061.65Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
I1J0P4_BRADI0.0e+0060.13Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
I1IA27_BRADI0.0e+0059.97Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
I1H466_BRADI0.0e+0059.81Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
BLAST of CmoCh18G003620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.0e-11238.93 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.17.3e-4742.86ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.13.8e-1942.37ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
ATMG00240.11.7e-1135.90ATMG00240.1 Gag-Pol-related retrotransposon family protein[more]
ATMG00300.12.5e-1033.98ATMG00300.1 Gag-Pol-related retrotransposon family protein[more]
BLAST of CmoCh18G003620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147794801|emb|CAN71427.1|0.0e+0065.11hypothetical protein VITISV_027864 [Vitis vinifera][more]
gi|147817226|emb|CAN75363.1|2.4e-28668.61hypothetical protein VITISV_026292 [Vitis vinifera][more]
gi|147798853|emb|CAN61340.1|1.4e-23371.36hypothetical protein VITISV_007301 [Vitis vinifera][more]
gi|47824985|gb|AAT38758.1|7.2e-23040.37Putative gag-pol polyprotein, identical [Solanum demissum][more]
gi|9294121|dbj|BAB01972.1|1.5e-22239.38copia-like retrotransposable element [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR001878Znf_CCHC
IPR012337RNaseH-like_sf
IPR013103RVT_2
IPR025724GAG-pre-integrase_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G003620.1CmoCh18G003620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 322..438
score: 2.1
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 320..486
score: 23
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 58..85
score: 1.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 66..80
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 66..82
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 67..80
score: 11
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 59..89
score: 1.2
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 318..479
score: 4.6
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 323..495
score: 1.24
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 642..885
score: 6.6E
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 257..309
score: 1.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..106
score: 0.0coord: 125..1044
score:
NoneNo IPR availablePANTHERPTHR11439:SF164SUBFAMILY NOT NAMEDcoord: 1..106
score: 0.0coord: 125..1044
score:
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 894..1075
score: 4.3E-37coord: 641..864
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB379
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB402
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB403
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB409
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB412
CmoCh18G003620Cucurbita pepo (Zucchini)cmocpeB415
CmoCh18G003620Bottle gourd (USVL1VR-Ls)cmolsiB354
CmoCh18G003620Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G003620Cucumber (Gy14) v2cgybcmoB082
CmoCh18G003620Cucumber (Gy14) v2cgybcmoB749
CmoCh18G003620Melon (DHL92) v3.6.1cmomedB408
CmoCh18G003620Melon (DHL92) v3.6.1cmomedB428
CmoCh18G003620Silver-seed gourdcarcmoB0204
CmoCh18G003620Silver-seed gourdcarcmoB0741
CmoCh18G003620Silver-seed gourdcarcmoB0883
CmoCh18G003620Silver-seed gourdcarcmoB0980
CmoCh18G003620Silver-seed gourdcarcmoB1269
CmoCh18G003620Cucumber (Chinese Long) v3cmocucB0457
CmoCh18G003620Cucumber (Chinese Long) v3cmocucB0483
CmoCh18G003620Cucumber (Chinese Long) v3cmocucB0494
CmoCh18G003620Watermelon (97103) v2cmowmbB378
CmoCh18G003620Watermelon (97103) v2cmowmbB393
CmoCh18G003620Watermelon (97103) v2cmowmbB396
CmoCh18G003620Wax gourdcmowgoB0514
CmoCh18G003620Wax gourdcmowgoB0529
CmoCh18G003620Wax gourdcmowgoB0544
CmoCh18G003620Cucurbita moschata (Rifu)cmocmoB011
CmoCh18G003620Cucurbita moschata (Rifu)cmocmoB170
CmoCh18G003620Cucurbita moschata (Rifu)cmocmoB330
CmoCh18G003620Cucurbita moschata (Rifu)cmocmoB334
CmoCh18G003620Cucurbita moschata (Rifu)cmocmoB349
CmoCh18G003620Cucumber (Gy14) v1cgycmoB0034
CmoCh18G003620Cucumber (Gy14) v1cgycmoB0332
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB039
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB467
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB507
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB644
CmoCh18G003620Cucurbita maxima (Rimu)cmacmoB849
CmoCh18G003620Wild cucumber (PI 183967)cmocpiB383
CmoCh18G003620Wild cucumber (PI 183967)cmocpiB418
CmoCh18G003620Wild cucumber (PI 183967)cmocpiB419
CmoCh18G003620Cucumber (Chinese Long) v2cmocuB380
CmoCh18G003620Cucumber (Chinese Long) v2cmocuB412
CmoCh18G003620Cucumber (Chinese Long) v2cmocuB415
CmoCh18G003620Melon (DHL92) v3.5.1cmomeB373
CmoCh18G003620Melon (DHL92) v3.5.1cmomeB356
CmoCh18G003620Watermelon (Charleston Gray)cmowcgB338
CmoCh18G003620Watermelon (Charleston Gray)cmowcgB339
CmoCh18G003620Watermelon (Charleston Gray)cmowcgB352
CmoCh18G003620Watermelon (97103) v1cmowmB362
CmoCh18G003620Watermelon (97103) v1cmowmB372
CmoCh18G003620Watermelon (97103) v1cmowmB395