CmoCh18G001290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G001290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Iron-sulfur cluster assembly 1-like protein
Location	Cmo_Chr18 : 933393 .. 936385 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGATTAGAAAAAAACAATTGGAAAACCAGTCTCCCGAATTCCTGGAGAGAGAGAGAAATCGGTGAGGATGTTGAGTTTCAGTTCGAAGAGGCTTCTAGGGATTGTGTCTAGGGATTTTTCGTCGCCGGCCGTTCAAATCTTCCCGCGATTTTACCACGAGAGGGTTATTGATCACTACAGTAACCCTCGAAACGTTGGATCGTTTGATAAGAACGATCCGACGGTCGGCACGGGCCTTGTCGGTGCGCCCGCCTGTGGCGATGTTATGAAGCTTCAGATCAAGGTTGATGAGAAGACTGGTAAGGTTGTTGATGCTTGCTTCAAGACGTTTGGCTGCGGTTCCGCGATTGCTTCCTCGTCGTTGGGTTCGTTTTTCTTCTCTGTTCCTTAAATTTCTTTATTGGAGAAATTGAGAACTATATTTGTTGTTGATATCTTGCGATTTCATTGTGATTTCTGGAACGAGGAGGGGACAGAATCGGAAACGCATTTTGTTTTAGTGCTCATTAGGTCTCCCGCTTTCAAGTTTTAGCTCTACTGTATGTTTTGATAGGTTCGGAGAGGTATTTTTTCTGATTCCTGCCCTCGAGGATAAGGAGATGGGCATTTAAACTTCATGCCTTTCTTTTAAATCTTGTTCTTAAGTTGATATCTAGGTTCCATTGGCTGTTTCAATAAAATTTCTGCCTGCGGCATGCCATTCCATTCAAGTTATGCGATTTAGAATGTAGCTCGAAGACCGGAATTTCGGTAGCCTTGTTTGTGGATAAATTGCTCCTGAATTTCATTGGACGGACAAAATTATTATTGAAGCTATCGTGACCCATTGTTTGTCCCTCGCCTTGGACGTTGGTAGTCCTGTCACGGTCATCTAATGTCGTTCTCCTAAGGCCGACTAGCATGCCATGTACCATTCTCTATCTTTCTGTTCAGAATATGCAAAATGAAAGTCTTGGTCTCTTGGTCTCTTGGTCTCTTGGTCTCTTTGTCTCTTGCCTTTGCTAGGACTAGGAGTAAATTTAGCTTTTGGGTTTTTCTACTGTATGGGGTAGAGTGGGTTGATCTCGCTCCACATTCTACTTTTGTGTATTTGTTTCTTTAGAAGCTTTTGGTACTTACTGCAAGTGAATTGTGATCTTCTGGTCACATTAGGTTATATATGTAGAGGGCTTTATAAATGTGTGAATTTTGAACTTGCAGCTACAGAAATGGTGAAAGGGAAGCATATGGAAGAAGCCTTAACCATTAAAAATTCGTAAGTTTCATTTACCATGTACTTTTCATCTGATTATTATTCGACGAGTTTTCTTTGTATTGTTCATTTGATGTTTTTCTATTAGATATATCATCTGTTTTTTCTCTTGATGAGTCCTGGGGGAAAGATATATGGTAGTATAATTTCATAGATTGGTATGAAGTGTGGGTAGCTACTTCCATTATCGTAAAAATCATCGTGATGTTTGGTCACATGGCCGAAAAATTTATTTAGGGATGCTAACTTTTTGAAAGTGTTTGTGGTGGAGCTCTGAATTGGTGTTTTATTTCCTTTTCTATTAAAAATACGTGTAAGCATACTCGAAAGTCATTTCAATGTATGTTCTCTGCAGCTATTATCAACAAATAATGGATATGACCAATAGTTTTAAAATTCATATTTGTAGGATTATTTGTGGAACACTACTGTCAACAGTTTTCAAATTTCAGAGTTGCAGCATATGACACATAAAATTTGAATGTGTTTCTGTTGATCGAACTACAAACTACTAACAGCTTTCGTTTCTTTGTGCACTGAATGATCCATGTACTTCAGTTGGTATTTTGCTTTATTGAAGATTCCAATATTTTCTACTTGCACGTTATAGTATGAGATTTCGATTCAAAATTGTACTGTTTTCACTTTTTAAGTGTTTGGCCTTTTTTTCGAGTTGTACTGCAGCAGTCATGCCATAAATCAGTGAGTTTAAGATAATGAGCCAGAACAAACTTGCAGTTTTAGATGCTCCCGGGACTTGCTAAAAGAATAATACCTGAATACATAATAATAATATCATCAACTTACTTTATGCGGTCGCCTTCCTTCTGTTCATCATTCTCCTTTTGGTTATTGGTGTATTCAAAGGGTTCTCGATGTCTTACACAGTTTTCTTATCTATACTCTCCCGGTTTGTGTTCGTCAGGCCCTTTCTTGAATTCATTTGTGAATGCGCATTTTGGTGATTGCATTATTGCATTTACCACCCTCCAGCCTTCAAGGTTTATACTTCGAAATAACGTTGGTATACTCGATGCTGCAGGGAAATTGCTAAACATCTCTCCCTACCGCCTGTTAAGTTGCACTGTAGCATGCTTGCCGAAGACGCTATTAAGGCTGCTGTTAAAGATTATGAAGCCAAGCGTGCCAAATTGATGGGTGATGCTGAAACTCCCCCCGCGGATAAGGCCTCGAACGCTTAGCCAAGTAATGGTTGTAAATGATGTAAAAACTATTATAGTCAATATTTGTAGTCCAAGGTTTTTAATAATCACCTTAGTTTACTTTCAATGTTCTCTTTGATTTCCCCCCTTCCAGGGAACTGGAAGCAAGTGTTAGACCATTGGATTACAGGTTCGGACTGCAGTTTTGATTCTATCACGTCGATTTTCGTTGTTTTTCAAATAATCTCTGAAATTAATGTGGCCTTTTGATTGAGTACTATGCTTCTGCTGATGAGATTTTTAGTCTTTTAGACTCTGCTTGATATTGACTGTGAGCTTTTAGGTACAAGGTGGTTGTGTGCTGGTTAGGTTGTTGTGTGTTGTTTTTCTAGGACGATCGAGTATATACGATCGTGGTTCGTTGCCTATTAGTCGAGCATTTTTGAACCCTGGTCCGCTTATGTTCTAAGATTGTCTCATTCCGTGTGTTTACCTGATTATAGCTCAAGCCTAGCAGAGTTCGGCTGTAAATCAACTTCTATATTTGGACTCTCGTCGTGTACAATGAATTTACGAC

mRNA sequence

TAGATTAGAAAAAAACAATTGGAAAACCAGTCTCCCGAATTCCTGGAGAGAGAGAGAAATCGGTGAGGATGTTGAGTTTCAGTTCGAAGAGGCTTCTAGGGATTGTGTCTAGGGATTTTTCGTCGCCGGCCGTTCAAATCTTCCCGCGATTTTACCACGAGAGGGTTATTGATCACTACAGTAACCCTCGAAACGTTGGATCGTTTGATAAGAACGATCCGACGGTCGGCACGGGCCTTGTCGGTGCGCCCGCCTGTGGCGATGTTATGAAGCTTCAGATCAAGGTTGATGAGAAGACTGGTAAGGTTGTTGATGCTTGCTTCAAGACGTTTGGCTGCGGTTCCGCGATTGCTTCCTCGTCGTTGGCTACAGAAATGGTGAAAGGGAAGCATATGGAAGAAGCCTTAACCATTAAAAATTCGGAAATTGCTAAACATCTCTCCCTACCGCCTGTTAAGTTGCACTGTAGCATGCTTGCCGAAGACGCTATTAAGGCTGCTGTTAAAGATTATGAAGCCAAGCGTGCCAAATTGATGGGTGATGCTGAAACTCCCCCCGCGGATAAGGCCTCGAACGCTTAGCCAAGTAATGGTTGTAAATGATGTAAAAACTATTATAGTCAATATTTGTAGTCCAAGGTTTTTAATAATCACCTTAGTTTACTTTCAATGTTCTCTTTGATTTCCCCCCTTCCAGGGAACTGGAAGCAAGTGTTAGACCATTGGATTACAGGTTCGGACTGCAGTTTTGATTCTATCACGTCGATTTTCGTTGTTTTTCAAATAATCTCTGAAATTAATGTGGCCTTTTGATTGAGTACTATGCTTCTGCTGATGAGATTTTTAGTCTTTTAGACTCTGCTTGATATTGACTGTGAGCTTTTAGGTACAAGGTGGTTGTGTGCTGGTTAGGTTGTTGTGTGTTGTTTTTCTAGGACGATCGAGTATATACGATCGTGGTTCGTTGCCTATTAGTCGAGCATTTTTGAACCCTGGTCCGCTTATGTTCTAAGATTGTCTCATTCCGTGTGTTTACCTGATTATAGCTCAAGCCTAGCAGAGTTCGGCTGTAAATCAACTTCTATATTTGGACTCTCGTCGTGTACAATGAATTTACGAC

Coding sequence (CDS)

ATGTTGAGTTTCAGTTCGAAGAGGCTTCTAGGGATTGTGTCTAGGGATTTTTCGTCGCCGGCCGTTCAAATCTTCCCGCGATTTTACCACGAGAGGGTTATTGATCACTACAGTAACCCTCGAAACGTTGGATCGTTTGATAAGAACGATCCGACGGTCGGCACGGGCCTTGTCGGTGCGCCCGCCTGTGGCGATGTTATGAAGCTTCAGATCAAGGTTGATGAGAAGACTGGTAAGGTTGTTGATGCTTGCTTCAAGACGTTTGGCTGCGGTTCCGCGATTGCTTCCTCGTCGTTGGCTACAGAAATGGTGAAAGGGAAGCATATGGAAGAAGCCTTAACCATTAAAAATTCGGAAATTGCTAAACATCTCTCCCTACCGCCTGTTAAGTTGCACTGTAGCATGCTTGCCGAAGACGCTATTAAGGCTGCTGTTAAAGATTATGAAGCCAAGCGTGCCAAATTGATGGGTGATGCTGAAACTCCCCCCGCGGATAAGGCCTCGAACGCTTAG

Homology

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BLAST of CmoCh18G001290 vs. Swiss-Prot
Match: ISU1_ARATH (Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.7e-62
Identity = 123/159 (77.36%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  ++K+ LG+ SR  +  +V I  R YHE VIDHY NPRNVGSFDKNDP VGTGLVGA
Sbjct: 2   MLKQAAKKALGLTSRQSTPWSVGIL-RTYHENVIDHYDNPRNVGSFDKNDPNVGTGLVGA 61

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIKVDEKTG++VDA FKTFGCGSAIASSS+ATE VKGK ME+ LTIKN+EI
Sbjct: 62  PACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEI 121

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDA 160
           AKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K  G A
Sbjct: 122 AKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKRVKTNGAA 159

[Close]

BLAST of CmoCh18G001290 vs. Swiss-Prot
Match: ISU3_ARATH (Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana GN=ISU3 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-53
Identity = 108/159 (67.92%), Postives = 128/159 (80.50%), Query Frame = 1


Query: 1   MLSFSSKR-LLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVG 60
           ML  ++KR  LG+ S++       +  R YH  VIDHY NPRNVGSFDKNDP VGTGLVG
Sbjct: 1   MLRQTTKRAFLGLASQN--PTPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVG 60

Query: 61  APACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSE 120
           AP CGDVMKLQ+K D  +G+++DA FKTFGCGSAIA+SS+ATE VKGK +EE LTIKNS+
Sbjct: 61  APQCGDVMKLQVKFDG-SGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQ 120

Query: 121 IAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGD 159
           IAKHLSLPPVKLHCSMLAEDAIKAA+K+Y+ K+ K  G+
Sbjct: 121 IAKHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDKANGE 156

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BLAST of CmoCh18G001290 vs. Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-52
Identity = 107/147 (72.79%), Postives = 122/147 (82.99%), Query Frame = 1


Query: 14  SRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKV 73
           +R+ S+PA     R YH++V+DHY NPRNVGS DK    VGTGLVGAPACGDVMKLQI+V
Sbjct: 25  ARELSAPA-----RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQV 84

Query: 74  DEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEIAKHLSLPPVKLHC 133
           DEK GK+VDA FKTFGCGSAIASSSLATE VKGK +EEALTIKN++IAK L LPPVKLHC
Sbjct: 85  DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHC 144

Query: 134 SMLAEDAIKAAVKDYEAKRAKLMGDAE 161
           SMLAEDAIKAA+ DY+ K+    G+AE
Sbjct: 145 SMLAEDAIKAALADYKLKQEPKKGEAE 165

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BLAST of CmoCh18G001290 vs. Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ISU1 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.9e-52
Identity = 101/150 (67.33%), Postives = 123/150 (82.00%), Query Frame = 1


Query: 8   RLLGIVSRDFSSPAVQIFP-----RFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGAPA 67
           R++G+ +   ++P V   P     RFYH +VIDHY+NPRNVGS DKN P VGTGLVGAPA
Sbjct: 25  RIIGVAAARATAPTVGSSPSMASARFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPA 84

Query: 68  CGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEIAK 127
           CGDVMKLQI+V+++TG + +  FKTFGCGSAIASSS  TE+V+GK +E+A  IKN+EIA+
Sbjct: 85  CGDVMKLQIQVNDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIAR 144

Query: 128 HLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 153
            LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct: 145 ELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174

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BLAST of CmoCh18G001290 vs. Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-51
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 14  SRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKV 73
           +R+ S+PA     R YH++V+DHY NPRNVGS DK    VGTGLVGAPACGDVMKLQI+V
Sbjct: 26  ARELSAPA-----RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQV 85

Query: 74  DEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEIAKHLSLPPVKLHC 133
           DEK GK+VDA FKTFGCGSAIASSSLATE VKGK +EEALTIKN++IAK L LPPVKLHC
Sbjct: 86  DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHC 145

Query: 134 SMLAEDAIKAAVKDYEAKR 153
           SMLAEDAIKAA+ DY+ K+
Sbjct: 146 SMLAEDAIKAALADYKLKQ 158

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BLAST of CmoCh18G001290 vs. TrEMBL
Match: A0A0A0LTI4_CUCSA (Iron-sulfur cluster assembly protein OS=Cucumis sativus GN=Csa_1G046100 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.3e-78
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML FSSKRLLGI S+D  SPAVQI PRFYHERVIDHY+NPRNVGSFDKNDPTVGTGLVGA
Sbjct: 1   MLRFSSKRLLGIASKDLPSPAVQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DEKTGKVVDACFKTFGCGSAIASSSLATEMVKGK M+EALTIKNSEI
Sbjct: 61  PACGDVMKLQIKIDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKQMDEALTIKNSEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKL   AE+   +K SNA
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLANGAESSSVEKVSNA 170

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BLAST of CmoCh18G001290 vs. TrEMBL
Match: A0A0B0MMB9_GOSAR (Iron-sulfur cluster assembly protein OS=Gossypium arboreum GN=F383_01457 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-68
Identity = 135/174 (77.59%), Postives = 150/174 (86.21%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  +SKRLLG+ SR+  S  VQI PR YHE+VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLASKRLLGLTSREIPSRPVQILPRLYHEKVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DE++GK+VDACFKTFGCGSAIASSS+ATE VKGK M+E LTIKN+EI
Sbjct: 61  PACGDVMKLQIKIDEESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMDEVLTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMG----DAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKD E KRAKL G    DA   P +KA++A
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDVELKRAKLKGNSSADAANAPIEKAADA 174

[Close]

BLAST of CmoCh18G001290 vs. TrEMBL
Match: A0A0D2PIU0_GOSRA (Iron-sulfur cluster assembly protein OS=Gossypium raimondii GN=B456_004G263800 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-68
Identity = 135/174 (77.59%), Postives = 149/174 (85.63%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  +SKRLLG+ SR+  S  VQI PR YHE VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLASKRLLGLTSREIPSRPVQILPRLYHENVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DE++GK+VDACFKTFGCGSAIASSS+ATE VKGK M+E LTIKN+EI
Sbjct: 61  PACGDVMKLQIKIDEESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMDEVLTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMG----DAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKD E KRAKL G    DA   P +KA++A
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDMELKRAKLKGNSSADAANAPIEKAADA 174

[Close]

BLAST of CmoCh18G001290 vs. TrEMBL
Match: A0A061EZC1_THECC (Iron-sulfur cluster assembly protein OS=Theobroma cacao GN=TCM_025125 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-68
Identity = 131/170 (77.06%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML   SKRLLG+ S +F    VQI PR YHE VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLVSKRLLGLASHEFPPRPVQILPRLYHENVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+D+++GK+VDACFKTFGCGSAIASSS+ATE VKGK MEE +TIKN+EI
Sbjct: 61  PACGDVMKLQIKIDDESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMEEVVTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           AKHL+LPPVKLHCSMLAEDAIKAAVKD EAKRAKL G +   P +KA++A
Sbjct: 121 AKHLALPPVKLHCSMLAEDAIKAAVKDVEAKRAKLNGSSNAAPIEKAADA 170

[Close]

BLAST of CmoCh18G001290 vs. TrEMBL
Match: A0A061FV55_THECC (Iron-sulfur cluster assembly protein OS=Theobroma cacao GN=TCM_012081 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-67
Identity = 133/171 (77.78%), Postives = 147/171 (85.96%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFS-SPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVG 60
           ML  +SKRLL + SRD + S  VQI PR YHE VIDHY+NPRNVGSFDKNDP VGTGLVG
Sbjct: 1   MLRLASKRLLELASRDAAPSRTVQILPRLYHENVIDHYNNPRNVGSFDKNDPNVGTGLVG 60

Query: 61  APACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSE 120
           APACGDVMKLQIK+DE TGK+ DACFKTFGCGSAIASSS+ATE VKGK MEE LTIKN+ 
Sbjct: 61  APACGDVMKLQIKIDENTGKITDACFKTFGCGSAIASSSVATEWVKGKSMEEVLTIKNTA 120

Query: 121 IAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           IAKHL+LPPVKLHCSMLAEDAIKAAVKD EAKRAKL G ++  P +KA++A
Sbjct: 121 IAKHLALPPVKLHCSMLAEDAIKAAVKDVEAKRAKLNGSSDAAPVEKAADA 171

[Close]

BLAST of CmoCh18G001290 vs. TAIR10
Match: AT4G22220.1 (AT4G22220.1 SufE/NifU family protein)

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-63
Identity = 123/159 (77.36%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  ++K+ LG+ SR  +  +V I  R YHE VIDHY NPRNVGSFDKNDP VGTGLVGA
Sbjct: 2   MLKQAAKKALGLTSRQSTPWSVGIL-RTYHENVIDHYDNPRNVGSFDKNDPNVGTGLVGA 61

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIKVDEKTG++VDA FKTFGCGSAIASSS+ATE VKGK ME+ LTIKN+EI
Sbjct: 62  PACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEI 121

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDA 160
           AKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K  G A
Sbjct: 122 AKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKRVKTNGAA 159

[Close]

BLAST of CmoCh18G001290 vs. TAIR10
Match: AT4G04080.1 (AT4G04080.1 ISCU-like 3)

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-54
Identity = 108/159 (67.92%), Postives = 128/159 (80.50%), Query Frame = 1


Query: 1   MLSFSSKR-LLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVG 60
           ML  ++KR  LG+ S++       +  R YH  VIDHY NPRNVGSFDKNDP VGTGLVG
Sbjct: 1   MLRQTTKRAFLGLASQN--PTPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVG 60

Query: 61  APACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSE 120
           AP CGDVMKLQ+K D  +G+++DA FKTFGCGSAIA+SS+ATE VKGK +EE LTIKNS+
Sbjct: 61  APQCGDVMKLQVKFDG-SGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQ 120

Query: 121 IAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGD 159
           IAKHLSLPPVKLHCSMLAEDAIKAA+K+Y+ K+ K  G+
Sbjct: 121 IAKHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDKANGE 156

[Close]

BLAST of CmoCh18G001290 vs. TAIR10
Match: AT3G01020.1 (AT3G01020.1 ISCU-like 2)

HSP 1 Score: 200.7 bits (509), Expect = 7.4e-52
Identity = 95/128 (74.22%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 27  RFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDEKTGKVVDACFK 86
           R YHE VIDH+ NPRNVGSF++NDP VGTGLVGAPACGD+M LQIKVD+ +G+++D  FK
Sbjct: 25  RLYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDD-SGQIIDTRFK 84

Query: 87  TFGCGSAIASSSLATEMVKGKHMEEALTIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVK 146
           TFGCGSAIASSS+A+E +KGK ++E +TIKN+EIAKHL LPPVKLHCSMLAEDAIK+AV+
Sbjct: 85  TFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVR 144

Query: 147 DYEAKRAK 155
           DY+ K+AK
Sbjct: 145 DYKEKQAK 151

[Close]

BLAST of CmoCh18G001290 vs. NCBI nr
Match: gi|659067254|ref|XP_008438468.1| (PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 1.8e-79
Identity = 155/170 (91.18%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML FSSKRLLGI SRD  SPAVQI PRFYHERVIDHY+NPRNVGSFDKNDPTVGTGLVGA
Sbjct: 1   MLRFSSKRLLGIASRDLPSPAVQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGK MEEALTIKNSEI
Sbjct: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKQMEEALTIKNSEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKL   AE+   +KASNA
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLANGAESSSVEKASNA 170

[Close]

BLAST of CmoCh18G001290 vs. NCBI nr
Match: gi|449469541|ref|XP_004152478.1| (PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML FSSKRLLGI S+D  SPAVQI PRFYHERVIDHY+NPRNVGSFDKNDPTVGTGLVGA
Sbjct: 1   MLRFSSKRLLGIASKDLPSPAVQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DEKTGKVVDACFKTFGCGSAIASSSLATEMVKGK M+EALTIKNSEI
Sbjct: 61  PACGDVMKLQIKIDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKQMDEALTIKNSEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKL   AE+   +K SNA
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLANGAESSSVEKVSNA 170

[Close]

BLAST of CmoCh18G001290 vs. NCBI nr
Match: gi|728819578|gb|KHG03243.1| (Iron-sulfur cluster assembly 1 -like protein [Gossypium arboreum])

HSP 1 Score: 267.3 bits (682), Expect = 1.8e-68
Identity = 135/174 (77.59%), Postives = 150/174 (86.21%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  +SKRLLG+ SR+  S  VQI PR YHE+VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLASKRLLGLTSREIPSRPVQILPRLYHEKVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DE++GK+VDACFKTFGCGSAIASSS+ATE VKGK M+E LTIKN+EI
Sbjct: 61  PACGDVMKLQIKIDEESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMDEVLTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMG----DAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKD E KRAKL G    DA   P +KA++A
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDVELKRAKLKGNSSADAANAPIEKAADA 174

[Close]

BLAST of CmoCh18G001290 vs. NCBI nr
Match: gi|823154127|ref|XP_012476926.1| (PREDICTED: iron-sulfur cluster assembly protein 1-like [Gossypium raimondii])

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 135/174 (77.59%), Postives = 149/174 (85.63%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML  +SKRLLG+ SR+  S  VQI PR YHE VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLASKRLLGLTSREIPSRPVQILPRLYHENVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+DE++GK+VDACFKTFGCGSAIASSS+ATE VKGK M+E LTIKN+EI
Sbjct: 61  PACGDVMKLQIKIDEESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMDEVLTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMG----DAETPPADKASNA 171
           AKHLSLPPVKLHCSMLAEDAIKAAVKD E KRAKL G    DA   P +KA++A
Sbjct: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDMELKRAKLKGNSSADAANAPIEKAADA 174

[Close]

BLAST of CmoCh18G001290 vs. NCBI nr
Match: gi|590637857|ref|XP_007029235.1| (SufE/NifU family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 265.8 bits (678), Expect = 5.3e-68
Identity = 131/170 (77.06%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 1   MLSFSSKRLLGIVSRDFSSPAVQIFPRFYHERVIDHYSNPRNVGSFDKNDPTVGTGLVGA 60
           ML   SKRLLG+ S +F    VQI PR YHE VIDHY+NPRNVGSFDKNDP VGTGLVGA
Sbjct: 1   MLRLVSKRLLGLASHEFPPRPVQILPRLYHENVIDHYNNPRNVGSFDKNDPNVGTGLVGA 60

Query: 61  PACGDVMKLQIKVDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKHMEEALTIKNSEI 120
           PACGDVMKLQIK+D+++GK+VDACFKTFGCGSAIASSS+ATE VKGK MEE +TIKN+EI
Sbjct: 61  PACGDVMKLQIKIDDESGKIVDACFKTFGCGSAIASSSVATEWVKGKSMEEVVTIKNTEI 120

Query: 121 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLMGDAETPPADKASNA 171
           AKHL+LPPVKLHCSMLAEDAIKAAVKD EAKRAKL G +   P +KA++A
Sbjct: 121 AKHLALPPVKLHCSMLAEDAIKAAVKDVEAKRAKLNGSSNAAPIEKAADA 170

The following BLAST results are available for this feature:

BLAST of CmoCh18G001290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISU1_ARATH	5.7e-62	77.36	Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1	[more]
ISU3_ARATH	3.7e-53	67.92	Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana GN=ISU3 PE=2 SV=1	[more]
ISCU_HUMAN	1.4e-52	72.79	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU ...	[more]
ISU1_KLULA	6.9e-52	67.33	Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis (s...	[more]
ISCU_MOUSE	2.0e-51	74.82	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu ...	[more]

BLAST of CmoCh18G001290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTI4_CUCSA	2.3e-78	88.82	Iron-sulfur cluster assembly protein OS=Cucumis sativus GN=Csa_1G046100 PE=3 SV=...	[more]
A0A0B0MMB9_GOSAR	1.3e-68	77.59	Iron-sulfur cluster assembly protein OS=Gossypium arboreum GN=F383_01457 PE=3 SV...	[more]
A0A0D2PIU0_GOSRA	2.2e-68	77.59	Iron-sulfur cluster assembly protein OS=Gossypium raimondii GN=B456_004G263800 P...	[more]
A0A061EZC1_THECC	3.7e-68	77.06	Iron-sulfur cluster assembly protein OS=Theobroma cacao GN=TCM_025125 PE=3 SV=1	[more]
A0A061FV55_THECC	1.8e-67	77.78	Iron-sulfur cluster assembly protein OS=Theobroma cacao GN=TCM_012081 PE=3 SV=1	[more]

BLAST of CmoCh18G001290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22220.1	3.2e-63	77.36	SufE/NifU family protein	[more]
AT4G04080.1	2.1e-54	67.92	ISCU-like 3	[more]
AT3G01020.1	7.4e-52	74.22	ISCU-like 2	[more]

BLAST of CmoCh18G001290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067254\|ref\|XP_008438468.1\|	1.8e-79	91.18	PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis melo]	[more]
gi\|449469541\|ref\|XP_004152478.1\|	3.3e-78	88.82	PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis sativus]	[more]
gi\|728819578\|gb\|KHG03243.1\|	1.8e-68	77.59	Iron-sulfur cluster assembly 1 -like protein [Gossypium arboreum]	[more]
gi\|823154127\|ref\|XP_012476926.1\|	3.1e-68	77.59	PREDICTED: iron-sulfur cluster assembly protein 1-like [Gossypium raimondii]	[more]
gi\|590637857\|ref\|XP_007029235.1\|	5.3e-68	77.06	SufE/NifU family protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002871	NIF_FeS_clus_asmbl_NifU_N
IPR011339	ISC_FeS_clus_asmbl_IscU

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0051536	iron-sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001290.1	CmoCh18G001290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002871	NIF system FeS cluster assembly, NifU, N-terminal	PFAM	PF01592	NifU_N	coord: 29..153 score: 1.7
IPR011339	ISC system FeS cluster assembly, IscU scaffold	TIGRFAMs	TIGR01999	TIGR01999	coord: 29..152 score: 3.7
None	No IPR available	GENE3D	G3DSA:3.90.1010.10		coord: 28..153 score: 7.5
None	No IPR available	PANTHER	PTHR10093	IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG	coord: 2..164 score: 1.1
None	No IPR available	unknown	SSF82649	SufE/NifU	coord: 28..152 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G001290	Cucsa.098460	Cucumber (Gy14) v1	cgycmoB0206
CmoCh18G001290	CmaCh13G008870	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G001290	CmaCh18G001710	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G001290	Cla000978	Watermelon (97103) v1	cmowmB371
CmoCh18G001290	Csa1G046100	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G001290	MELO3C002268	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G001290	ClCG01G013180	Watermelon (Charleston Gray)	cmowcgB341
CmoCh18G001290	CSPI01G08520	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G001290	Lsi02G003730	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G001290	Cp4.1LG09g10180	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G001290	Cp4.1LG20g02420	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G001290	MELO3C002268.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G001290	CsaV3_1G008530	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G001290	Cla97C01G012180	Watermelon (97103) v2	cmowmbB379
CmoCh18G001290	Bhi08G001316	Wax gourd	cmowgoB0517
CmoCh18G001290	CsGy1G008410	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G001290	Carg07677	Silver-seed gourd	carcmoB1351
CmoCh18G001290	Carg06728	Silver-seed gourd	carcmoB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G001290	CmoCh13G009160	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G001290	Cucumber (Gy14) v1	cgycmoB0588
CmoCh18G001290	Cucurbita maxima (Rimu)	cmacmoB089
CmoCh18G001290	Cucurbita maxima (Rimu)	cmacmoB138
CmoCh18G001290	Cucurbita maxima (Rimu)	cmacmoB219
CmoCh18G001290	Wild cucumber (PI 183967)	cmocpiB393
CmoCh18G001290	Cucumber (Chinese Long) v2	cmocuB390
CmoCh18G001290	Melon (DHL92) v3.5.1	cmomeB362
CmoCh18G001290	Watermelon (Charleston Gray)	cmowcgB365
CmoCh18G001290	Watermelon (97103) v1	cmowmB397
CmoCh18G001290	Cucurbita pepo (Zucchini)	cmocpeB388
CmoCh18G001290	Cucurbita pepo (Zucchini)	cmocpeB410
CmoCh18G001290	Bottle gourd (USVL1VR-Ls)	cmolsiB375
CmoCh18G001290	Cucumber (Gy14) v2	cgybcmoB093
CmoCh18G001290	Silver-seed gourd	carcmoB0499
CmoCh18G001290	Cucumber (Chinese Long) v3	cmocucB0468
CmoCh18G001290	Watermelon (97103) v2	cmowmbB412
CmoCh18G001290	Cucurbita moschata (Rifu)	cmocmoB065
CmoCh18G001290	Cucurbita moschata (Rifu)	cmocmoB101