CmoCh18G001070 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G001070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dynein light chain
Location	Cmo_Chr18 : 744983 .. 746009 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTGTGATCAGTCAAACGCATCACGCAGTGGTATGAACACAGCACACACAATTTCACTATTCATTTCCTCATCCAAAAATGGCTTCCCATCTCTCTAAACCCCAAACATTCCCACCCTTTTCGTTTTTCATCTCCATTTCTCTCACAGATCTCCCATGGCGAAACCCACCAGCCATCTCCCCCGTTTAGCCCCTCCTGATCCTGATTCAGTGGCCAATCCCCCCACATGCCCGAAGCTTGAATCGGCCATGGCTGCCGCTGCTGCTCCTAAGCCCTCTTCCTTGCCCAAACTCCATAATCAGCCCCTTGTGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAAAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCACCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCTTTTGCAGCCTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATCAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGAATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCTAAAGCTCTTGCTCTGTCTCTCAAGAGGGTAATTAGCTTAAGGTTCATGTGCAATGTTCAAGTTCTTGAATGATCAGCCAATAACTTTTATGGGTTTTTTGTAATTCTTTCAGGAGTTTGATGGGGCTTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAATTGGTGGGTTCTTATATCTATCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGAAGTAGATGGCCAAGGTAAAAGAGACTGTTCATCCTAATACTTGTACATTTGTTCTGATAAGAAACACAGTAGCCATACAGTATATTCCTCCTATAATATGTTTAGGGATGTCTTATGAGCTGTTGATAGAGCAATTTTCATTGCAATTATTGAG

mRNA sequence

TTAGGTGTGATCAGTCAAACGCATCACGCAGTGGTATGAACACAGCACACACAATTTCACTATTCATTTCCTCATCCAAAAATGGCTTCCCATCTCTCTAAACCCCAAACATTCCCACCCTTTTCGTTTTTCATCTCCATTTCTCTCACAGATCTCCCATGGCGAAACCCACCAGCCATCTCCCCCGTTTAGCCCCTCCTGATCCTGATTCAGTGGCCAATCCCCCCACATGCCCGAAGCTTGAATCGGCCATGGCTGCCGCTGCTGCTCCTAAGCCCTCTTCCTTGCCCAAACTCCATAATCAGCCCCTTGTGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAAAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCACCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCTTTTGCAGCCTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATCAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGAATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCTAAAGCTCTTGCTCTGTCTCTCAAGAGGGAGTTTGATGGGGCTTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAATTGGTGGGTTCTTATATCTATCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGAAGTAGATGGCCAAGGTAAAAGAGACTGTTCATCCTAATACTTGTACATTTGTTCTGATAAGAAACACAGTAGCCATACAGTATATTCCTCCTATAATATGTTTAGGGATGTCTTATGAGCTGTTGATAGAGCAATTTTCATTGCAATTATTGAG

Coding sequence (CDS)

ATGGCGAAACCCACCAGCCATCTCCCCCGTTTAGCCCCTCCTGATCCTGATTCAGTGGCCAATCCCCCCACATGCCCGAAGCTTGAATCGGCCATGGCTGCCGCTGCTGCTCCTAAGCCCTCTTCCTTGCCCAAACTCCATAATCAGCCCCTTGTGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAAAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCACCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCTTTTGCAGCCTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATCAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGAATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCTAAAGCTCTTGCTCTGTCTCTCAAGAGGGAGTTTGATGGGGCTTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAATTGGTGGGTTCTTATATCTATCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGA

Homology

[Close]

BLAST of CmoCh18G001070 vs. Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 118 IKVVSVDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFG 177
           I V + DMP  MQ  A     KA +  E    + +A+ +K+EFD  Y P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 178 SFVTHSIGGFLYLSMDQKLYVLLFK 203
           SFVTH    F+Y +++ K  VLLFK
Sbjct: 68  SFVTHETKNFIYFNIN-KHSVLLFK 89

[Close]

BLAST of CmoCh18G001070 vs. Swiss-Prot
Match: DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 120 VVSVDMPPAMQIHAVNYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 179
           + + DMP  MQ  AV+ A +A   +EKF   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 180 FVTHSIGGFLYLSMDQKLYVLLFKT 204
           +VTH    F+Y  + Q + VLLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of CmoCh18G001070 vs. Swiss-Prot
Match: DYL1_SCHPO (Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dlc2 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 VVSVDMPPAMQIHAVNYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 179
           + +VDM   MQ  A++ A +A   MEKFT  K +A  +KREFD  + P WHCIVG +FGS
Sbjct: 4   IKAVDMSEKMQQEAIHAAVQA---MEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 63

Query: 180 FVTHSIGGFLYLSMDQKLYVLLFKT 204
           FVTH    F+Y  +    + LLFK+
Sbjct: 64  FVTHESRHFIYFYLGTVAF-LLFKS 84

[Close]

BLAST of CmoCh18G001070 vs. Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 VVSVDMPPAMQIHAVNYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 179
           + + DM   MQ  AV+ A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 180 FVTHSIGGFLYLSMDQKLYVLLFKT 204
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of CmoCh18G001070 vs. Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 VVSVDMPPAMQIHAVNYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 179
           + + DM   MQ  AV+ A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 180 FVTHSIGGFLYLSMDQKLYVLLFKT 204
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of CmoCh18G001070 vs. TrEMBL
Match: A0A0A0LW58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045690 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.5e-58
Identity = 117/145 (80.69%), Postives = 125/145 (86.21%), Query Frame = 1


Query: 65  QKFANEKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVD 124
           QK   E+KELK  QK     S+RPTVSLLRK GR KSFA SQVEL+DIFAKNG+KVVSVD
Sbjct: 143 QKEEKEEKELKEPQKEQKIVSLRPTVSLLRKSGRRKSFAVSQVELSDIFAKNGVKVVSVD 202

Query: 125 MPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSI 184
           M PAMQIHAV+ ARK HDSMEKFTSK LALSLKREFDG YGP WHCIVGTSFGSFVTHS+
Sbjct: 203 MQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSV 262

Query: 185 GGFLYLSMDQKLYVLLFKTSVQRAD 210
           GGFLY S+DQKLY+LLFKTSVQRAD
Sbjct: 263 GGFLYFSLDQKLYILLFKTSVQRAD 287

[Close]

BLAST of CmoCh18G001070 vs. TrEMBL
Match: A0A0D2U5R9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G189800 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.8e-48
Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 1


Query: 70  EKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVDMPPAM 129
           ++K+LK   +GH  D M+   + L   GR +S   SQVEL DI A  G+K+VSVDMPP M
Sbjct: 154 KEKQLKKRDEGHDNDDMKKASAPL---GRRRSLGGSQVELGDILANCGVKIVSVDMPPFM 213

Query: 130 QIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLY 189
           QIHAV+ ARK HDS+EKFTSKALAL+LK+EFDG YGP WHCIVGTSFGSFVTHS+GGFLY
Sbjct: 214 QIHAVDCARKTHDSLEKFTSKALALTLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLY 273

Query: 190 LSMDQKLYVLLFKTSVQRAD 210
            SMDQKLYVLLFKTSVQRAD
Sbjct: 274 FSMDQKLYVLLFKTSVQRAD 290

[Close]

BLAST of CmoCh18G001070 vs. TrEMBL
Match: B9S757_RICCO (Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_1333990 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.6e-47
Identity = 111/183 (60.66%), Postives = 128/183 (69.95%), Query Frame = 1


Query: 29  ESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKPHLQKFANEKKELKGLQKGHHPDSMRP 88
           + ++  A A K      L N+ L  V+     +   +K  N  KE+K L +G   D  R 
Sbjct: 123 KESIKEATASKDKVKRLLSNKELGVVNKKKVQENEKKKKDNRSKEVKDLIEGL--DIKRM 182

Query: 89  TVSLLRK--GGRTKSFAASQVELADIFAKNGIKVVSVDMPPAMQIHAVNYARKAHDSMEK 148
           TVSL     GGR +S   SQVELAD  A NG K+VSVDMPP MQIHAV+ ARK HDS+EK
Sbjct: 183 TVSLDGGVGGGRRRSLCGSQVELADFLANNGAKIVSVDMPPFMQIHAVDCARKTHDSLEK 242

Query: 149 FTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLYLSMDQKLYVLLFKTSVQ 208
           FTSK LAL+LK+EFDG YGP WHCIVGTSFGSFVTHS+GGFLY SMDQKLYVLLFKT+VQ
Sbjct: 243 FTSKTLALTLKKEFDGIYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTTVQ 302

Query: 209 RAD 210
           RAD
Sbjct: 303 RAD 303

[Close]

BLAST of CmoCh18G001070 vs. TrEMBL
Match: S1SMA4_THECC (Dynein light chain type 1 family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_045717 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 117/225 (52.00%), Postives = 139/225 (61.78%), Query Frame = 1


Query: 3   KPTSHLPRLAPPDPDSVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKP 62
           KPT+     APP P    +     K  +  A AA P   SL K +  PL      +K   
Sbjct: 74  KPTNDHHNHAPPQPSRDIHLQA--KAMTVSADAADPSKFSLIKANYLPLKTAKESLK--- 133

Query: 63  HLQKFANEKKELKGLQKGHHP----DSMRPTVSLLRKG--------------GRTKSFAA 122
             +K     K+L   ++ HH     DS +  +++  K               GR +SF  
Sbjct: 134 --EKVRKASKDLDKKREQHHQRSVLDSKKVDLTVKEKQVKNLHDVKKASASLGRRRSFCG 193

Query: 123 SQVELADIFAKNGIKVVSVDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAY 182
           SQVELADI A  G+K+VSVDMPP MQIHAV+ ARK HDS+EKFTSK LAL+LK+EFDG Y
Sbjct: 194 SQVELADILANCGVKIVSVDMPPFMQIHAVDCARKTHDSLEKFTSKTLALTLKKEFDGVY 253

Query: 183 GPVWHCIVGTSFGSFVTHSIGGFLYLSMDQKLYVLLFKTSVQRAD 210
           GP WHCIVGTSFGSFVTHS+GGFLY SMDQKLYVLLFKT+VQRAD
Sbjct: 254 GPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTTVQRAD 291

[Close]

BLAST of CmoCh18G001070 vs. TrEMBL
Match: A0A0A0LPA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008410 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-46
Identity = 110/207 (53.14%), Postives = 138/207 (66.67%), Query Frame = 1


Query: 4   PTSHLPRLAPPDPDSVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKPH 63
           P S    L+   P S   P T  K+        A  P+  P+ H+       S  + +  
Sbjct: 48  PLSDSDNLSKSRPPSPVGPRTEQKV--------AKNPNETPQEHSTTEKFNGSEERFEHM 107

Query: 64  LQKFANEKKELKGLQKGHHPDSMRPTVSLLR-KGGRTKSFAASQVELADIFAKNGIKVVS 123
           +     +++E+K L K H   + R +VSL   + GR +SF  SQ++L D+FAKNG+KVVS
Sbjct: 108 INCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRSFYGSQIQLGDVFAKNGVKVVS 167

Query: 124 VDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTH 183
            DMPP MQIHAV+ ARKAHDSMEKFTSK+LAL+LK+EFDG YGP WHCIVG SFGSFVTH
Sbjct: 168 ADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 227

Query: 184 SIGGFLYLSMDQKLYVLLFKTSVQRAD 210
           S+GGFLY SM QKLY+LLFKT+VQRA+
Sbjct: 228 SVGGFLYFSMAQKLYILLFKTTVQRAN 246

[Close]

BLAST of CmoCh18G001070 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 76/199 (38.19%), Postives = 107/199 (53.77%), Query Frame = 1


Query: 18  SVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKPHLQKFANEKKELKGL 77
           S+ NP + PK+           P S P +  Q +     +  +K H      +  EL+  
Sbjct: 28  SLINPKSKPKI-----------PISTPSISQQEVEEKPIVQSNKSHQNHVMRDIFELETT 87

Query: 78  --------QKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVDMPPAM 137
                   + G   +  R +VS + +    +  AA+++          +++++ DMP  M
Sbjct: 88  CSRNNERKKGGGAAEEGRKSVSHVERDTAARIEAAAEMLT--------VRILAADMPGFM 147

Query: 138 QIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLY 197
           Q HA   AR   DS+EKF+SK +A +LK+EFD  YGP WHCIVG+SFGSFVTHS G F+Y
Sbjct: 148 QAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIY 206

Query: 198 LSMDQKLYVLLFKTSVQRA 209
            SMD KLYVLLFKT V+ A
Sbjct: 208 FSMD-KLYVLLFKTKVRPA 206

[Close]

BLAST of CmoCh18G001070 vs. TAIR10
Match: AT1G23220.1 (AT1G23220.1 Dynein light chain type 1 family protein)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-21
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1


Query: 100 KSFAASQVELADIFAKNGIKVVSVDMPPAMQIHAVNYARKAHDSME-KFTSKALALSLKR 159
           K  A  Q +  D F    ++V + DMP   Q  A + +R+  ++   K  +K LA +LK+
Sbjct: 21  KKKAKEQQDQKDEF---NVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKK 80

Query: 160 EFDGAYGPVWHCIVGTSFGSFVTHSIGGFLYLSMDQKLYVLLFKTSVQRAD 210
           +FD AYGP WHCIVGTSFGS+VTHS GGFLY  +D K+YVLLFKT+V+  D
Sbjct: 81  DFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQID-KVYVLLFKTAVEPLD 127

[Close]

BLAST of CmoCh18G001070 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 119 KVVSVDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGS 178
           KV   DMP  MQ+ A+  A ++ D  + F S ++A  +K+EFD  YG  W C+VGT+FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 179 FVTHSIGGFLYLSMDQKLYVLLFK 203
           F THS G F+Y  +   L  L+FK
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFK 89

[Close]

BLAST of CmoCh18G001070 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 106 QVELADIFAKNGIKVVSVDMPPAMQIHAVNYARKAHDSMEKFT-SKALALSLKREFDGAY 165
           +VE +    K  + + S DM   MQ  A+  A  A    EK++  K +A ++K+EFD  +
Sbjct: 29  EVEASPPAGKRAV-IKSADMKDDMQKEAIEIAISA---FEKYSVEKDIAENIKKEFDKKH 88

Query: 166 GPVWHCIVGTSFGSFVTHSIGGFLYLSMDQKLYVLLFKT 204
           G  WHCIVG +FGS+VTH    F+Y  +DQK  VLLFK+
Sbjct: 89  GATWHCIVGRNFGSYVTHETNHFVYFYLDQKA-VLLFKS 122

[Close]

BLAST of CmoCh18G001070 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 124 DMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHS 183
           DM   M+  A++ A KA D  +      +A  +K+EFD +YG  W CIVGT FGSFVTH 
Sbjct: 12  DMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHC 71

Query: 184 IGGFLYLSMDQKLYVLLFKTSV 206
            G F++ S+   L +LLFK SV
Sbjct: 72  SGCFIHFSVG-SLTILLFKGSV 92

[Close]

BLAST of CmoCh18G001070 vs. NCBI nr
Match: gi|659067124|ref|XP_008437777.1| (PREDICTED: uncharacterized protein LOC103483107 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 3.6e-58
Identity = 117/145 (80.69%), Postives = 126/145 (86.90%), Query Frame = 1


Query: 65  QKFANEKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVD 124
           +K   E+KELK  QKG    S+RPTVSLLRK GR KSFA SQVEL+DIFAKNG+KVVSVD
Sbjct: 145 EKEEKEEKELKEPQKGQKIVSLRPTVSLLRKSGRRKSFAVSQVELSDIFAKNGVKVVSVD 204

Query: 125 MPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSI 184
           M PAMQIHAV+ ARK HDSMEKFTSK LALSLKREFDG YGP WHCIVGTSFGSFVTHS+
Sbjct: 205 MQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSV 264

Query: 185 GGFLYLSMDQKLYVLLFKTSVQRAD 210
           GGFLY S+DQKLY+LLFKTSVQRAD
Sbjct: 265 GGFLYFSLDQKLYILLFKTSVQRAD 289

[Close]

BLAST of CmoCh18G001070 vs. NCBI nr
Match: gi|778657659|ref|XP_004152543.2| (PREDICTED: uncharacterized protein LOC101220241 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57
Identity = 117/145 (80.69%), Postives = 125/145 (86.21%), Query Frame = 1


Query: 65  QKFANEKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVD 124
           QK   E+KELK  QK     S+RPTVSLLRK GR KSFA SQVEL+DIFAKNG+KVVSVD
Sbjct: 143 QKEEKEEKELKEPQKEQKIVSLRPTVSLLRKSGRRKSFAVSQVELSDIFAKNGVKVVSVD 202

Query: 125 MPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSI 184
           M PAMQIHAV+ ARK HDSMEKFTSK LALSLKREFDG YGP WHCIVGTSFGSFVTHS+
Sbjct: 203 MQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSV 262

Query: 185 GGFLYLSMDQKLYVLLFKTSVQRAD 210
           GGFLY S+DQKLY+LLFKTSVQRAD
Sbjct: 263 GGFLYFSLDQKLYILLFKTSVQRAD 287

[Close]

BLAST of CmoCh18G001070 vs. NCBI nr
Match: gi|697155483|ref|XP_009631986.1| (PREDICTED: uncharacterized protein LOC104121644 [Nicotiana tomentosiformis])

HSP 1 Score: 199.1 bits (505), Expect = 7.5e-48
Identity = 103/195 (52.82%), Postives = 134/195 (68.72%), Query Frame = 1


Query: 28  LESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKPHLQKF-------------ANEKKEL 87
           L  +   A   K +S+  +    ++   + +K  PH +K              + +  +L
Sbjct: 102 LHGSRYVAEGEKHNSVKDIDKAIVLHEKAEVKKIPHKEKKEVDVKRPLALLSKSQDSDQL 161

Query: 88  KGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVDMPPAMQIHAV 147
           KG Q+G    + RP+ SL   GGR KSF+ SQ ELA+ F+ +G+KVVSVDMPP MQIHAV
Sbjct: 162 KGFQQGVDKITKRPSFSLSMNGGRRKSFSCSQTELANFFSCSGVKVVSVDMPPFMQIHAV 221

Query: 148 NYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLYLSMDQ 207
           ++ARKAHDS+EKF+SK+L  SLK+EFDG YGP WHCIVGTSFGSFVTHS+GGF+Y SMD 
Sbjct: 222 DFARKAHDSLEKFSSKSLGFSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFIYFSMDH 281

Query: 208 KLYVLLFKTSVQRAD 210
           KLYVLLFKT+VQ+A+
Sbjct: 282 KLYVLLFKTTVQKAE 296

[Close]

BLAST of CmoCh18G001070 vs. NCBI nr
Match: gi|823211888|ref|XP_012438704.1| (PREDICTED: uncharacterized protein LOC105764607 [Gossypium raimondii])

HSP 1 Score: 198.7 bits (504), Expect = 9.7e-48
Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 1


Query: 70  EKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVDMPPAM 129
           ++K+LK   +GH  D M+   + L   GR +S   SQVEL DI A  G+K+VSVDMPP M
Sbjct: 154 KEKQLKKRDEGHDNDDMKKASAPL---GRRRSLGGSQVELGDILANCGVKIVSVDMPPFM 213

Query: 130 QIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLY 189
           QIHAV+ ARK HDS+EKFTSKALAL+LK+EFDG YGP WHCIVGTSFGSFVTHS+GGFLY
Sbjct: 214 QIHAVDCARKTHDSLEKFTSKALALTLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLY 273

Query: 190 LSMDQKLYVLLFKTSVQRAD 210
            SMDQKLYVLLFKTSVQRAD
Sbjct: 274 FSMDQKLYVLLFKTSVQRAD 290

[Close]

BLAST of CmoCh18G001070 vs. NCBI nr
Match: gi|698500078|ref|XP_009795819.1| (PREDICTED: uncharacterized protein LOC104242468 [Nicotiana sylvestris])

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 103/195 (52.82%), Postives = 134/195 (68.72%), Query Frame = 1


Query: 28  LESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKSKPHLQKF-------------ANEKKEL 87
           L  +   A   K +S+  +    ++   + +K  PH +K              + +  +L
Sbjct: 102 LHGSRYVAEGEKHNSVKDIDKAIVLHEKAEVKKIPHKEKKEVDVKKALALLSKSQDSDQL 161

Query: 88  KGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKVVSVDMPPAMQIHAV 147
           KG Q+G    + RP+ SL   GGR KSF+ SQ ELA+ F+ +G+KVVSVDMPP MQIHAV
Sbjct: 162 KGFQQGVDKITKRPSFSLSINGGRRKSFSCSQTELANFFSCSGVKVVSVDMPPFMQIHAV 221

Query: 148 NYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSIGGFLYLSMDQ 207
           ++ARKAHDS+EKF+SK+L  SLK+EFDG YGP WHCIVGTSFGSFVTHS+GGF+Y SMD 
Sbjct: 222 DFARKAHDSLEKFSSKSLGFSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFIYFSMDH 281

Query: 208 KLYVLLFKTSVQRAD 210
           KLYVLLFKT+VQ+A+
Sbjct: 282 KLYVLLFKTTVQKAE 296

The following BLAST results are available for this feature:

BLAST of CmoCh18G001070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DYL_DICDI	1.1e-11	47.06	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1	[more]
DYL1_HELCR	1.1e-11	47.06	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=...	[more]
DYL1_SCHPO	4.3e-11	47.06	Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
DYL2_BOVIN	1.2e-10	44.71	Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1	[more]
DYL2_HUMAN	1.2e-10	44.71	Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1	[more]

BLAST of CmoCh18G001070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW58_CUCSA	9.5e-58	80.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045690 PE=4 SV=1	[more]
A0A0D2U5R9_GOSRA	6.8e-48	70.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G189800 PE=4 SV=1	[more]
B9S757_RICCO	2.6e-47	60.66	Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_1333990 PE=4 S...	[more]
S1SMA4_THECC	1.7e-46	52.00	Dynein light chain type 1 family protein, putative isoform 2 OS=Theobroma cacao ...	[more]
A0A0A0LPA2_CUCSA	2.2e-46	53.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008410 PE=4 SV=1	[more]

BLAST of CmoCh18G001070 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20110.1	1.1e-25	38.19	Dynein light chain type 1 family protein	[more]
AT1G23220.1	4.8e-21	49.55	Dynein light chain type 1 family protein	[more]
AT3G16120.1	3.7e-13	44.05	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.4e-12	42.42	Dynein light chain type 1 family protein	[more]
AT4G27360.1	3.1e-12	46.34	Dynein light chain type 1 family protein	[more]

BLAST of CmoCh18G001070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067124\|ref\|XP_008437777.1\|	3.6e-58	80.69	PREDICTED: uncharacterized protein LOC103483107 [Cucumis melo]	[more]
gi\|778657659\|ref\|XP_004152543.2\|	1.4e-57	80.69	PREDICTED: uncharacterized protein LOC101220241 [Cucumis sativus]	[more]
gi\|697155483\|ref\|XP_009631986.1\|	7.5e-48	52.82	PREDICTED: uncharacterized protein LOC104121644 [Nicotiana tomentosiformis]	[more]
gi\|823211888\|ref\|XP_012438704.1\|	9.7e-48	70.71	PREDICTED: uncharacterized protein LOC105764607 [Gossypium raimondii]	[more]
gi\|698500078\|ref\|XP_009795819.1\|	1.3e-47	52.82	PREDICTED: uncharacterized protein LOC104242468 [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001372	Dynein_light_chain_typ-1/2

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001070.1	CmoCh18G001070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	GENE3D	G3DSA:3.30.740.10		coord: 117..203 score: 2.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 94..208 score: 2.5
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 118..203 score: 9.2
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 113..203 score: 5.8
None	No IPR available	PANTHER	PTHR11886:SF37	SUBFAMILY NOT NAMED	coord: 94..208 score: 2.5
None	No IPR available	unknown	SSF54648	DLC	coord: 116..203 score: 3.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G001070	Cucsa.197390	Cucumber (Gy14) v1	cgycmoB0588
CmoCh18G001070	CmaCh13G009170	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G001070	CmaCh18G001370	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G001070	CmaCh10G001660	Cucurbita maxima (Rimu)	cmacmoB089
CmoCh18G001070	Cla008324	Watermelon (97103) v1	cmowmB371
CmoCh18G001070	Cla019146	Watermelon (97103) v1	cmowmB397
CmoCh18G001070	Csa1G045690	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G001070	Csa1G008410	Cucumber (Chinese Long) v2	cmocuB390
CmoCh18G001070	MELO3C002224	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G001070	MELO3C017141	Melon (DHL92) v3.5.1	cmomeB362
CmoCh18G001070	ClCG01G014250	Watermelon (Charleston Gray)	cmowcgB343
CmoCh18G001070	ClCG06G016540	Watermelon (Charleston Gray)	cmowcgB365
CmoCh18G001070	CSPI01G08110	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G001070	CSPI01G01930	Wild cucumber (PI 183967)	cmocpiB393
CmoCh18G001070	Lsi06G015020	Bottle gourd (USVL1VR-Ls)	cmolsiB375
CmoCh18G001070	Lsi02G003360	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G001070	Cp4.1LG18g08070	Cucurbita pepo (Zucchini)	cmocpeB388
CmoCh18G001070	Cp4.1LG09g10560	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G001070	Cp4.1LG20g02070	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G001070	Cp4.1LG04g15190	Cucurbita pepo (Zucchini)	cmocpeB410
CmoCh18G001070	MELO3C017141.2	Melon (DHL92) v3.6.1	cmomedB413
CmoCh18G001070	MELO3C002224.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G001070	CsaV3_1G001970	Cucumber (Chinese Long) v3	cmocucB0468
CmoCh18G001070	CsaV3_1G008070	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G001070	Cla97C06G126130	Watermelon (97103) v2	cmowmbB412
CmoCh18G001070	Cla97C01G013250	Watermelon (97103) v2	cmowmbB383
CmoCh18G001070	Bhi08G001185	Wax gourd	cmowgoB0516
CmoCh18G001070	Bhi02G000281	Wax gourd	cmowgoB0547
CmoCh18G001070	CsGy1G008000	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G001070	Carg07707	Silver-seed gourd	carcmoB1351
CmoCh18G001070	Carg18164	Silver-seed gourd	carcmoB0841
CmoCh18G001070	Carg06694	Silver-seed gourd	carcmoB0673
CmoCh18G001070	Carg10387	Silver-seed gourd	carcmoB0499

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G001070	CmoCh10G001780	Cucurbita moschata (Rifu)	cmocmoB065
CmoCh18G001070	CmoCh11G001350	Cucurbita moschata (Rifu)	cmocmoB101
CmoCh18G001070	CmoCh13G009430	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G001070	Cucumber (Gy14) v1	cgycmoB0206
CmoCh18G001070	Cucumber (Gy14) v2	cgybcmoB093