CmoCh18G000250 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G000250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 104451 .. 105083 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGAGTCGGAGAGACAGACCGATTGATACTACGTTTAACGCTCCTGGAAAATCAATCAATGACGGAAGATTCAGAGAAGAGGGTCGATTCCATGGTGGACAAGCTGTTTCAGAATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGTACGTAAAGAACTTCTGGTTATATTTTGGAGCAATGCAGATGTTGACTCGAGATTTTCTGTGACTTTCATCTCCAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGCTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAGGCTCGTTACTTGACAGAGCTTCCGGGATTAAATTGCTGCCTCTTCTAAGGTATGGGATACATACACCCTTTGGAGATGGGTTTTTCATGTCATGCCTTCCCCAATTGAGTTCCTTCTACAATGATGTCTCTGCTGTCGTATCATTATCTAAATAACTAGTTATGGGATTTTCTAATATTGTATAGTAACTTTTTGAGGTTGCTTCTATTGAAGTTAAGAGTGACAAAGTGAAG

mRNA sequence

CGGAGTCGGAGAGACAGACCGATTGATACTACGTTTAACGCTCCTGGAAAATCAATCAATGACGGAAGATTCAGAGAAGAGGGTCGATTCCATGGTGGACAAGCTGTTTCAGAATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGCTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAGGCTCGTTACTTGACAGAGCTTCCGGGATTAAATTGCTGCCTCTTCTAAGGTATGGGATACATACACCCTTTGGAGATGGGTTTTTCATGTCATGCCTTCCCCAATTGAGTTCCTTCTACAATGATGTCTCTGCTGTCGTATCATTATCTAAATAACTAGTTATGGGATTTTCTAATATTGTATAGTAACTTTTTGAGGTTGCTTCTATTGAAGTTAAGAGTGACAAAGTGAAG

Coding sequence (CDS)

ATGCAGAAGCCCTTCCTAACTCAAATTCCGCATCACTCTTCGCCACATTCACCTAAGAACTCTCCATCGGGTTCTCTTATTAAGGAAATCATTGCAAAACTCTGTTTCCTTTTCCAGGTTGATGCCCCCGTTAGATCGGCTCCAAATCTATTCACATCTTCTGCAAAGAAATTGAAATGTAGTCTTTCTAACGAGAACACCAAGCGCTAG
Homology
[Close]
BLAST of CmoCh18G000250 vs. TrEMBL
Match: A0A0A0LQC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042120 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-06
Identity = 37/57 (64.91%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSAPNLFTSSAKKLKCSL-SNENTK 69
           SSPHSPKNSPS SLIK           V+ PV S  NLFTSSAKKLK SL SNE TK
Sbjct: 719 SSPHSPKNSPSASLIK-----------VNDPVTSVRNLFTSSAKKLKSSLVSNERTK 764

[Close]
BLAST of CmoCh18G000250 vs. NCBI nr
Match: gi|778657190|ref|XP_011650425.1| (PREDICTED: uncharacterized protein LOC101206120 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.9e-06
Identity = 37/57 (64.91%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSAPNLFTSSAKKLKCSL-SNENTK 69
           SSPHSPKNSPS SLIK           V+ PV S  NLFTSSAKKLK SL SNE TK
Sbjct: 719 SSPHSPKNSPSASLIK-----------VNDPVTSVRNLFTSSAKKLKSSLVSNERTK 764

[Close]
BLAST of CmoCh18G000250 vs. NCBI nr
Match: gi|659066675|ref|XP_008455775.1| (PREDICTED: probable GPI-anchored adhesin-like protein PGA55 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 8.9e-06
Identity = 37/57 (64.91%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 13  SSPHSPKNSPSGSLIKEIIAKLCFLFQVDAPVRSAPNLFTSSAKKLKCSL-SNENTK 69
           SSPHSPKNSPS SLIK           V+ PV S  NLFTSSAKKLK SL SNE TK
Sbjct: 733 SSPHSPKNSPSASLIK-----------VNDPVTSVRNLFTSSAKKLKSSLISNERTK 778

The following BLAST results are available for this feature:
BLAST of CmoCh18G000250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G000250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQC5_CUCSA6.2e-0664.91Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042120 PE=4 SV=1[more]
BLAST of CmoCh18G000250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh18G000250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778657190|ref|XP_011650425.1|8.9e-0664.91PREDICTED: uncharacterized protein LOC101206120 [Cucumis sativus][more]
gi|659066675|ref|XP_008455775.1|8.9e-0664.91PREDICTED: probable GPI-anchored adhesin-like protein PGA55 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G000250.1CmoCh18G000250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G000250Carg04794Silver-seed gourdcarcmoB0528
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G000250Watermelon (97103) v2cmowmbB400
CmoCh18G000250Watermelon (97103) v2cmowmbB402
CmoCh18G000250Wax gourdcmowgoB0516
CmoCh18G000250Wax gourdcmowgoB0546
CmoCh18G000250Cucurbita moschata (Rifu)cmocmoB064
CmoCh18G000250Cucurbita moschata (Rifu)cmocmoB100
CmoCh18G000250Cucurbita moschata (Rifu)cmocmoB171
CmoCh18G000250Cucumber (Gy14) v1cgycmoB0264
CmoCh18G000250Cucumber (Gy14) v1cgycmoB0587
CmoCh18G000250Cucurbita maxima (Rimu)cmacmoB136
CmoCh18G000250Cucurbita maxima (Rimu)cmacmoB224
CmoCh18G000250Cucurbita maxima (Rimu)cmacmoB408
CmoCh18G000250Wild cucumber (PI 183967)cmocpiB383
CmoCh18G000250Wild cucumber (PI 183967)cmocpiB388
CmoCh18G000250Cucumber (Chinese Long) v2cmocuB380
CmoCh18G000250Cucumber (Chinese Long) v2cmocuB385
CmoCh18G000250Melon (DHL92) v3.5.1cmomeB354
CmoCh18G000250Melon (DHL92) v3.5.1cmomeB356
CmoCh18G000250Watermelon (Charleston Gray)cmowcgB355
CmoCh18G000250Watermelon (Charleston Gray)cmowcgB357
CmoCh18G000250Watermelon (97103) v1cmowmB387
CmoCh18G000250Watermelon (97103) v1cmowmB389
CmoCh18G000250Cucurbita pepo (Zucchini)cmocpeB391
CmoCh18G000250Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G000250Cucurbita pepo (Zucchini)cmocpeB404
CmoCh18G000250Cucurbita pepo (Zucchini)cmocpeB413
CmoCh18G000250Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G000250Cucumber (Gy14) v2cgybcmoB082
CmoCh18G000250Cucumber (Gy14) v2cgybcmoB088
CmoCh18G000250Melon (DHL92) v3.6.1cmomedB404
CmoCh18G000250Melon (DHL92) v3.6.1cmomedB408
CmoCh18G000250Silver-seed gourdcarcmoB0527
CmoCh18G000250Silver-seed gourdcarcmoB0699
CmoCh18G000250Silver-seed gourdcarcmoB0812
CmoCh18G000250Cucumber (Chinese Long) v3cmocucB0457
CmoCh18G000250Cucumber (Chinese Long) v3cmocucB0463