CmoCh18G000170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G000170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Movement protein binding protein 2C, putative isoform 1
Location	Cmo_Chr18 : 70330 .. 70800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACGACTCTCACCGTCCAATTTCTTTTCATTCTTTACTCTCCTGCTTTTCCTTTCCGGTTTGGTAACTTACGGAGGCCTCTCGTTTCTCTCAAAATCCTTCCTTATTACTCTAGATTTCGTCTTCTCAAATCATGTTTGAGCCCCAACATTTCGTCGATTTGCAAGATAACAATGCTTTCGCCGATAATAAATCATGGCTTTCCGGCGACCACAACTCGTCCCCGACTCCGCTCCTCAGTCTCTCTTCACTCTCCAATGCATCGATTTCAACTTCGGCAACTACTGCTGATGGCGCTAATGGAAATGTTGATCGCGAACTCTACAACAATCTCGTCGAGATGGTGCCTCTCGTCCAGTCTCTCATTGTAATCCCTCTATTTTGAACTCTCTTTCACTGTTTAGATGCAGGGGAATGATGGGGTTTGTCTGAATTTTGTTATGGTGGCACTACATGGGGCTGCGGGGTAG

mRNA sequence

CCAACGACTCTCACCGTCCAATTTCTTTTCATTCTTTACTCTCCTGCTTTTCCTTTCCGGTTTGGTAACTTACGGAGGCCTCTCGTTTCTCTCAAAATCCTTCCTTATTACTCTAGATTTCGTCTTCTCAAATCATGTTTGAGCCCCAACATTTCGTCGATTTGCAAGATAACAATGCTTTCGCCGATAATAAATCATGGCTTTCCGGCGACCACAACTCGTCCCCGACTCCGCTCCTCAGTCTCTCTTCACTCTCCAATGCATCGATTTCAACTTCGGCAACTACTGCTGATGGCGCTAATGGAAATGTTGATCGCGAACTCTACAACAATCTCGTCGAGATGGTGCCTCTCGTCCAGTCTCTCATTATGCAGGGGAATGATGGGGTTTGTCTGAATTTTGTTATGGTGGCACTACATGGGGCTGCGGGGTAG

Coding sequence (CDS)

ATGTTTGAGCCCCAACATTTCGTCGATTTGCAAGATAACAATGCTTTCGCCGATAATAAATCATGGCTTTCCGGCGACCACAACTCGTCCCCGACTCCGCTCCTCAGTCTCTCTTCACTCTCCAATGCATCGATTTCAACTTCGGCAACTACTGCTGATGGCGCTAATGGAAATGTTGATCGCGAACTCTACAACAATCTCGTCGAGATGGTGCCTCTCGTCCAGTCTCTCATTATGCAGGGGAATGATGGGGTTTGTCTGAATTTTGTTATGGTGGCACTACATGGGGCTGCGGGGTAG

Homology

[Close]

BLAST of CmoCh18G000170 vs. TrEMBL
Match: A0A0A0LVN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039950 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT----TADGAN 60
          MF+PQH   LQD++ F D  SWLSGDHNSSP   LS SSL+NASISTS+T     A  AN
Sbjct: 1  MFDPQHL--LQDDSGFGDQNSWLSGDHNSSPARRLSHSSLANASISTSSTPAAAAAAAAN 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GN DREL+NNLV +VPLVQSLI
Sbjct: 61 GNFDRELFNNLVSIVPLVQSLI 80

[Close]

BLAST of CmoCh18G000170 vs. TrEMBL
Match: A0A067K8P9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11764 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLS-NASISTSATTADGANGNV 60
          M++PQHFVDLQ+N+ F D KSWLSGD NSSPT   + S LS + S STS T   GA GNV
Sbjct: 1  MYDPQHFVDLQENSNFGDPKSWLSGDDNSSPTLRRTHSQLSVHTSTSTSTT---GAAGNV 60

Query: 61 DRELYNNLVEMVPLVQSLIM 80
          DR L+NNLVEMVPLV+SLI+
Sbjct: 61 DRVLFNNLVEMVPLVESLIV 77

[Close]

BLAST of CmoCh18G000170 vs. TrEMBL
Match: A0A061FXD8_THECC (Movement protein binding protein 2C, putative isoform 2 OS=Theobroma cacao GN=TCM_014370 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDH----NSSPTPLLSLSSLSNASISTSATTADGAN 60
          MFEPQHFVDLQDN+ F D KSWLSGD+    NSSPT   + SSL+N++ S         N
Sbjct: 1  MFEPQHFVDLQDNSGFGDPKSWLSGDNNINDNSSPTHHRTQSSLTNSTPS---------N 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GNVDR LYN+LVEM+PLVQSLI
Sbjct: 61 GNVDRVLYNDLVEMIPLVQSLI 73

[Close]

BLAST of CmoCh18G000170 vs. TrEMBL
Match: A0A061G580_THECC (Movement protein binding protein 2C, putative isoform 1 OS=Theobroma cacao GN=TCM_014370 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDH----NSSPTPLLSLSSLSNASISTSATTADGAN 60
          MFEPQHFVDLQDN+ F D KSWLSGD+    NSSPT   + SSL+N++ S         N
Sbjct: 1  MFEPQHFVDLQDNSGFGDPKSWLSGDNNINDNSSPTHHRTQSSLTNSTPS---------N 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GNVDR LYN+LVEM+PLVQSLI
Sbjct: 61 GNVDRVLYNDLVEMIPLVQSLI 73

[Close]

BLAST of CmoCh18G000170 vs. TrEMBL
Match: D7SIP0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04870 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSATTADGANGNVD 60
          MFEPQHF+DL DN++  D KSWLSGD NSSP    + SSLS+AS       A G   NVD
Sbjct: 1  MFEPQHFMDLHDNSSLGDPKSWLSGDDNSSPIHRRTQSSLSSAS-------AAGTAANVD 60

Query: 61 RELYNNLVEMVPLVQSLI 79
          R L+N+LVE+VPLVQSLI
Sbjct: 61 RLLFNDLVEIVPLVQSLI 71

[Close]

BLAST of CmoCh18G000170 vs. TAIR10
Match: AT5G08120.1 (AT5G08120.1 movement protein binding protein 2C)

HSP 1 Score: 52.0 bits (123), Expect = 2.5e-07
Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 1


Query: 3  EPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSATTADGANGNVDRE 62
          + QHF+DLQ ++ F D+ SWL+GD +   +P              SA   +  N N+DR 
Sbjct: 4  QQQHFMDLQSDSGFGDDSSWLAGDDDLRLSP------------HQSAAGTNSGNENLDRR 63

Query: 63 LYNNLVEMVPLVQ 76
          L  +LVEMVPL++
Sbjct: 64 LLKDLVEMVPLIE 64

[Close]

BLAST of CmoCh18G000170 vs. NCBI nr
Match: gi|659066643|ref|XP_008454117.1| (PREDICTED: putative WEB family protein At1g65010, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 1   MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT-----TADGA 60
           MF PQHFVDLQD++AF D  SWLSGDH+SSP   L+ SSL+NASISTS+T      A  A
Sbjct: 65  MFGPQHFVDLQDDSAFGDQNSWLSGDHDSSPARRLTHSSLANASISTSSTPAAAAAAAAA 124

Query: 61  NGNVDRELYNNLVEMVPLVQSLI 79
           NGN DREL+NNLV MVPLVQSLI
Sbjct: 125 NGNFDRELFNNLVSMVPLVQSLI 147

[Close]

BLAST of CmoCh18G000170 vs. NCBI nr
Match: gi|659066641|ref|XP_008454029.1| (PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 1   MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT-----TADGA 60
           MF PQHFVDLQD++AF D  SWLSGDH+SSP   L+ SSL+NASISTS+T      A  A
Sbjct: 65  MFGPQHFVDLQDDSAFGDQNSWLSGDHDSSPARRLTHSSLANASISTSSTPAAAAAAAAA 124

Query: 61  NGNVDRELYNNLVEMVPLVQSLI 79
           NGN DREL+NNLV MVPLVQSLI
Sbjct: 125 NGNFDRELFNNLVSMVPLVQSLI 147

[Close]

BLAST of CmoCh18G000170 vs. NCBI nr
Match: gi|778657154|ref|XP_004137452.2| (PREDICTED: uncharacterized protein LOC101207962 isoform X2 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT----TADGAN 60
          MF+PQH   LQD++ F D  SWLSGDHNSSP   LS SSL+NASISTS+T     A  AN
Sbjct: 1  MFDPQHL--LQDDSGFGDQNSWLSGDHNSSPARRLSHSSLANASISTSSTPAAAAAAAAN 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GN DREL+NNLV +VPLVQSLI
Sbjct: 61 GNFDRELFNNLVSIVPLVQSLI 80

[Close]

BLAST of CmoCh18G000170 vs. NCBI nr
Match: gi|778657157|ref|XP_011650358.1| (PREDICTED: uncharacterized protein LOC101207962 isoform X3 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT----TADGAN 60
          MF+PQH   LQD++ F D  SWLSGDHNSSP   LS SSL+NASISTS+T     A  AN
Sbjct: 1  MFDPQHL--LQDDSGFGDQNSWLSGDHNSSPARRLSHSSLANASISTSSTPAAAAAAAAN 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GN DREL+NNLV +VPLVQSLI
Sbjct: 61 GNFDRELFNNLVSIVPLVQSLI 80

[Close]

BLAST of CmoCh18G000170 vs. NCBI nr
Match: gi|778657151|ref|XP_011650350.1| (PREDICTED: uncharacterized protein LOC101207962 isoform X1 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MFEPQHFVDLQDNNAFADNKSWLSGDHNSSPTPLLSLSSLSNASISTSAT----TADGAN 60
          MF+PQH   LQD++ F D  SWLSGDHNSSP   LS SSL+NASISTS+T     A  AN
Sbjct: 1  MFDPQHL--LQDDSGFGDQNSWLSGDHNSSPARRLSHSSLANASISTSSTPAAAAAAAAN 60

Query: 61 GNVDRELYNNLVEMVPLVQSLI 79
          GN DREL+NNLV +VPLVQSLI
Sbjct: 61 GNFDRELFNNLVSIVPLVQSLI 80

The following BLAST results are available for this feature:

BLAST of CmoCh18G000170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh18G000170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVN6_CUCSA	1.7e-17	67.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039950 PE=4 SV=1	[more]
A0A067K8P9_JATCU	4.2e-16	66.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11764 PE=4 SV=1	[more]
A0A061FXD8_THECC	1.6e-15	63.41	Movement protein binding protein 2C, putative isoform 2 OS=Theobroma cacao GN=TC...	[more]
A0A061G580_THECC	1.6e-15	63.41	Movement protein binding protein 2C, putative isoform 1 OS=Theobroma cacao GN=TC...	[more]
D7SIP0_VITVI	6.8e-14	61.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04870 PE=4 SV=...	[more]

BLAST of CmoCh18G000170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08120.1	2.5e-07	38.36	movement protein binding protein 2C	[more]

BLAST of CmoCh18G000170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066643\|ref\|XP_008454117.1\|	4.1e-20	69.88	PREDICTED: putative WEB family protein At1g65010, chloroplastic isoform X2 [Cucu...	[more]
gi\|659066641\|ref\|XP_008454029.1\|	4.1e-20	69.88	PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform ...	[more]
gi\|778657154\|ref\|XP_004137452.2\|	2.5e-17	67.07	PREDICTED: uncharacterized protein LOC101207962 isoform X2 [Cucumis sativus]	[more]
gi\|778657157\|ref\|XP_011650358.1\|	2.5e-17	67.07	PREDICTED: uncharacterized protein LOC101207962 isoform X3 [Cucumis sativus]	[more]
gi\|778657151\|ref\|XP_011650350.1\|	2.5e-17	67.07	PREDICTED: uncharacterized protein LOC101207962 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048367	shoot system development
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0002230	positive regulation of defense response to virus by host
biological_process	GO:0051493	regulation of cytoskeleton organization
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0010375	stomatal complex patterning
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0048316	seed development
biological_process	GO:0010497	plasmodesmata-mediated intercellular transport
biological_process	GO:0048364	root development
biological_process	GO:0015867	ATP transport
biological_process	GO:0015866	ADP transport
biological_process	GO:0044699	single-organism process
biological_process	GO:0006950	response to stress
biological_process	GO:0009987	cellular process
biological_process	GO:0051224	negative regulation of protein transport
cellular_component	GO:0015630	microtubule cytoskeleton
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005471	ATP:ADP antiporter activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G000170.1	CmoCh18G000170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35502	FAMILY NOT NAMED	coord: 2..78 score: 2.4
None	No IPR available	PANTHER	PTHR35502:SF2	MOVEMENT PROTEIN BINDING PROTEIN 2C	coord: 2..78 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G000170	CmaCh18G000160	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G000170	Cla018540	Watermelon (97103) v1	cmowmB385
CmoCh18G000170	ClCG04G011560	Watermelon (Charleston Gray)	cmowcgB353
CmoCh18G000170	Lsi02G001420	Bottle gourd (USVL1VR-Ls)	cmolsiB361
CmoCh18G000170	Cp4.1LG20g00840	Cucurbita pepo (Zucchini)	cmocpeB406
CmoCh18G000170	Cp4.1LG09g11650	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G000170	MELO3C002054.2	Melon (DHL92) v3.6.1	cmomedB403
CmoCh18G000170	CsaV3_1G006260	Cucumber (Chinese Long) v3	cmocucB0471
CmoCh18G000170	Cla97C04G078390	Watermelon (97103) v2	cmowmbB398
CmoCh18G000170	Bhi08G000884	Wax gourd	cmowgoB0524
CmoCh18G000170	CsGy1G006090	Cucumber (Gy14) v2	cgybcmoB095
CmoCh18G000170	Carg22773	Silver-seed gourd	carcmoB0699
CmoCh18G000170	Carg04779	Silver-seed gourd	carcmoB0529

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G000170	CmoCh13G011010	Cucurbita moschata (Rifu)	cmocmoB169

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G000170	Wax gourd	cmowgoB0546
CmoCh18G000170	Cucurbita moschata (Rifu)	cmocmoB064
CmoCh18G000170	Cucurbita moschata (Rifu)	cmocmoB100
CmoCh18G000170	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh18G000170	Cucumber (Gy14) v1	cgycmoB0264
CmoCh18G000170	Cucumber (Gy14) v1	cgycmoB0266
CmoCh18G000170	Cucumber (Gy14) v1	cgycmoB0587
CmoCh18G000170	Cucurbita maxima (Rimu)	cmacmoB136
CmoCh18G000170	Cucurbita maxima (Rimu)	cmacmoB221
CmoCh18G000170	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G000170	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G000170	Wild cucumber (PI 183967)	cmocpiB388
CmoCh18G000170	Wild cucumber (PI 183967)	cmocpiB397
CmoCh18G000170	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G000170	Cucumber (Chinese Long) v2	cmocuB385
CmoCh18G000170	Cucumber (Chinese Long) v2	cmocuB394
CmoCh18G000170	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G000170	Melon (DHL92) v3.5.1	cmomeB352
CmoCh18G000170	Watermelon (Charleston Gray)	cmowcgB357
CmoCh18G000170	Watermelon (97103) v1	cmowmB389
CmoCh18G000170	Cucurbita pepo (Zucchini)	cmocpeB391
CmoCh18G000170	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G000170	Cucurbita pepo (Zucchini)	cmocpeB413
CmoCh18G000170	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G000170	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G000170	Cucumber (Gy14) v2	cgybcmoB088
CmoCh18G000170	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G000170	Silver-seed gourd	carcmoB0527
CmoCh18G000170	Silver-seed gourd	carcmoB0812
CmoCh18G000170	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G000170	Cucumber (Chinese Long) v3	cmocucB0463
CmoCh18G000170	Watermelon (97103) v2	cmowmbB402