CmoCh17G013630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G013630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 10594921 .. 10595583 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTGGTGTATCAGATATTGTTGTTTTTGTTGATATTGATGTTGATGTCGTTTGTTTTCCTTTTCCTATTCCCCTTATCTTGCTGAAGTTGAAAGTGAAACTGGTTGGAAATTGCATGTCGGTGAATTGATGTCTGTGAGATACTTTGATGTTTGAAATGGAACTGTGATTTGGATCGTTTGAAATGTATAAGCTTTTGTTTTTCGTTTCGTAGAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGGTTCTGTTCCATGCACTTGAATGAAATTTCTCTTTGCATTGGATAGAAGATTTTTTTCCAGTGATTTTTATGCTTTCTGTGTGCGCGTTTTTTTTTTCTTTCCAGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA

mRNA sequence

ATGCATCTGGTGTATCAGATATTGTTAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA

Coding sequence (CDS)

ATGCATCTGGTGTATCAGATATTGTTAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA
Homology
[Close]
BLAST of CmoCh17G013630 vs. TrEMBL
Match: A0A0A0KF95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091990 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVR+KVGAGAS I     ALQ LRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRQKVGAGASSI----PALQSLRPAASASRYYSSAAKEM 39

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: gi|659119886|ref|XP_008459895.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVR+KVGAGAS I     ALQRLRPAASA RYYSSAAKE+
Sbjct: 1  MWGIVRQKVGAGASSI----PALQRLRPAASAPRYYSSAAKEM 39

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: gi|778711774|ref|XP_011656794.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVR+KVGAGAS I     ALQ LRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRQKVGAGASSI----PALQSLRPAASASRYYSSAAKEM 39

The following BLAST results are available for this feature:
BLAST of CmoCh17G013630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G013630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF95_CUCSA2.2e-0679.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091990 PE=4 SV=1[more]
BLAST of CmoCh17G013630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G013630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119886|ref|XP_008459895.1|2.4e-0679.07PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cu... [more]
gi|778711774|ref|XP_011656794.1|3.1e-0679.07PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013630.1CmoCh17G013630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G013630Watermelon (97103) v2cmowmbB354
CmoCh17G013630Wax gourdcmowgoB0456
CmoCh17G013630Wax gourdcmowgoB0479
CmoCh17G013630Cucurbita moschata (Rifu)cmocmoB322
CmoCh17G013630Cucumber (Gy14) v1cgycmoB0951
CmoCh17G013630Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G013630Cucurbita maxima (Rimu)cmacmoB899
CmoCh17G013630Wild cucumber (PI 183967)cmocpiB361
CmoCh17G013630Cucumber (Chinese Long) v2cmocuB358
CmoCh17G013630Melon (DHL92) v3.5.1cmomeB308
CmoCh17G013630Watermelon (Charleston Gray)cmowcgB318
CmoCh17G013630Watermelon (97103) v1cmowmB347
CmoCh17G013630Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G013630Cucurbita pepo (Zucchini)cmocpeB352
CmoCh17G013630Cucurbita pepo (Zucchini)cmocpeB372
CmoCh17G013630Bottle gourd (USVL1VR-Ls)cmolsiB322
CmoCh17G013630Cucumber (Gy14) v2cgybcmoB734
CmoCh17G013630Melon (DHL92) v3.6.1cmomedB353
CmoCh17G013630Silver-seed gourdcarcmoB0021
CmoCh17G013630Silver-seed gourdcarcmoB1312
CmoCh17G013630Cucumber (Chinese Long) v3cmocucB0433