CmoCh17G013320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G013320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosomal protein L23, component of cytosolic 80S ribosome and 60S large subunit
Location	Cmo_Chr17 : 10444463 .. 10446224 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCCGACAACACAGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAGGGCCGCCTCAATAGATTGCCATCCGCATGTGTTGGTGATATGGTTATGGCCACCGTCAAGAAGGGAAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTTATGTATTTCGAAGGTTTTGCCTATTTCCATCCTTTTCCTATTTTTGTTTTTTAGTGCTTTTGTTTGGTTTCCTTTTACTCCATTAGGCAGCGGTAAATTGGATAGAGGAGGAACGCGTTTTCCTTACTTGTGGGAAGTTATAGTGTTGAAATTGAATTATTGGGGATATTAATTATTGGGTTTTTGGTGTAGTTGATCCCATTTAGCTTGTGAATATTCGTTCAGAGTTTGATTGCCTGCTGTTGAATGAGTTTTTATGAAGGCCTTTTGCTTTATTATTGTTCATGTTTCTTCTTAGATTGAAATAAGTTGCATTTTTTTCGAAATAAACTTTTCTGGTTATTCATTTCATTGATGAACATCTGCTTATCTTGAAGTGGCATTTTAAAACTACATTGTGTTATCTGTTGGGCTTAATTCCCTTTGAACATTCTCTTAATTTAAAAAATTGATCTGAATTGATGTAATTAAAATAACTGATGTTTATATTTAAATGTGTCTTATTTTCTTACTTTGTTTCGCTTCATAGTTTCAAGAACTAGAAGACTTCAATTGAGATTCCTCGCTTGTAATTTGGAGTCTTTGTTTCTATCTTTGATGAGAATTTTATATCGGGAATGTTGACTGGGGAAGTAATACACTTCTACCTTTGTCCTCGAAGGAAAATGGACAATTGATTGTGAAATAGTGAATAGAATGATTAAAAGTGCATATTTGTATTATTTGTCATGCTGGTTTTGCAAATGCCAATTTCTTACCACCACCATAACTTATCCTTCTGTTTTTCTTATATATATGCATTGTAATTTTTTTTTGCAGATAATGCTGGTGTTATTGTCAATCCCAAGGGTGAGATGAAAGGTAATGTTTATTTATTATCTATTTTTAAAAATATCAATTGTTTCTATACCCAGCAAGTATTTGGGTCAGCTTGAAGGGTAGTGTGTTTCTGGTCGGTGAGTATAGAATGTTATAAATGCGTGACATGCCATGGAAGATGGCAATCATCATGAAGGTTTACACGAATGCAATTCTTGGTGGGAGTTTCCACAAATTTGTCCTTGCAGATTGTTTACCTTCTGATATACAGTTTTAGCCTAATGGATGTGTTGGTGGTACGATAACAATAGTTAGAATCGAACGAAGGCGAAGGAGAGGAGAAATACCAATTCCTAATTAGTCTTGGTTTTATAAAGTCTAACTTCATATTTTAACAATGAGCCTGCCTAGGGAATATGTTTAGTTTAAATTTATCTTCTATTTTGGACATTGATCACACCACATAATGGCTCGACTTATTTATTAAATAAATAACTAATGATGCTTGATGAAACCTGGCTACTTTGGTTGGTTAGCACCCCTTGGCTAATTATCTCTTACAGGACGACACTGGCATGCGTAGTCACGAAGATCTATAAAGATGCTGTATTTGATTGTAGGTTCGGCTATTACTGGCCCCATTGGAAAGGAATGTGCCGATCTTTGGCCAAGAATTGCAAGTGCTGCTAATGCCATCGTATGA

mRNA sequence

ATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCCGACAACACAGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAGGGCCGCCTCAATAGATTGCCATCCGCATGTGTTGGTGATATGGTTATGGCCACCGTCAAGAAGGGAAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTTATGTATTTCGAAGATAATGCTGGTGTTATTGTCAATCCCAAGGGTGAGATGAAAGGTTCGGCTATTACTGGCCCCATTGGAAAGGAATGTGCCGATCTTTGGCCAAGAATTGCAAGTGCTGCTAATGCCATCGTATGA

Coding sequence (CDS)

ATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCCGACAACACAGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAGGGCCGCCTCAATAGATTGCCATCCGCATGTGTTGGTGATATGGTTATGGCCACCGTCAAGAAGGGAAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTTATGTATTTCGAAGATAATGCTGGTGTTATTGTCAATCCCAAGGGTGAGATGAAAGGTTCGGCTATTACTGGCCCCATTGGAAAGGAATGTGCCGATCTTTGGCCAAGAATTGCAAGTGCTGCTAATGCCATCGTATGA

Homology

[Close]

BLAST of CmoCh17G013320 vs. Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-65
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           V+PAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-60
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           V+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASA
Sbjct: 76  VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 139

[Close]

BLAST of CmoCh17G013320 vs. Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.5e-56
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           +SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKK
Sbjct: 16  ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           V PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS 
Sbjct: 76  VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASN 135

Query: 121 ANAI 125
           A +I
Sbjct: 136 AGSI 139

[Close]

BLAST of CmoCh17G013320 vs. Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.9e-56
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           +SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKK
Sbjct: 16  ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           V PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS 
Sbjct: 76  VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASN 135

Query: 121 ANAI 125
           A +I
Sbjct: 136 AGSI 139

[Close]

BLAST of CmoCh17G013320 vs. TrEMBL
Match: V7BH47_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TrEMBL
Match: M5WP13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TrEMBL
Match: M4FGG9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 818 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 877

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 878 VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 937

Query: 121 ANAIV 126
           ANAIV
Sbjct: 938 ANAIV 942

[Close]

BLAST of CmoCh17G013320 vs. TrEMBL
Match: R0I605_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012532mg PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TrEMBL
Match: A0A078J7K6_BRANA (BnaC08g50110D protein OS=Brassica napus GN=BnaC08g50110D PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 43  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 102

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 103 VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 162

Query: 121 ANAIV 126
           ANAIV
Sbjct: 163 ANAIV 167

[Close]

BLAST of CmoCh17G013320 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TAIR10
Match: AT3G04400.1 (AT3G04400.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 11  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 70
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 71  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 126
           R  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct: 68  RTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmoCh17G013320 vs. NCBI nr
Match: gi|2341028|gb|AAB70426.1| (Strong similarity to 60S ribosomal protein L17 (gb|X01694). EST gb|AA042332 comes from this gene [Arabidopsis thaliana])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 33  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 92

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 93  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 152

Query: 121 ANAIV 126
           ANAIV
Sbjct: 153 ANAIV 157

[Close]

BLAST of CmoCh17G013320 vs. NCBI nr
Match: gi|15226102|ref|NP_180895.1| (60S ribosomal protein L23B [Arabidopsis thaliana])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. NCBI nr
Match: gi|470120643|ref|XP_004296407.1| (PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135

Query: 121 ANAIV 126
           ANAIV
Sbjct: 136 ANAIV 140

[Close]

BLAST of CmoCh17G013320 vs. NCBI nr
Match: gi|674874230|emb|CDY59177.1| (BnaC08g50110D [Brassica napus])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 43  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 102

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 103 VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 162

Query: 121 ANAIV 126
           ANAIV
Sbjct: 163 ANAIV 167

[Close]

BLAST of CmoCh17G013320 vs. NCBI nr
Match: gi|565482140|ref|XP_006298710.1| (hypothetical protein CARUB_v10014805mg, partial [Capsella rubella])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 37  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 96

Query: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 97  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 156

Query: 121 ANAIV 126
           ANAIV
Sbjct: 157 ANAIV 161

The following BLAST results are available for this feature:

BLAST of CmoCh17G013320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23_ARATH	5.6e-67	100.00	60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3	[more]
RL23_TOBAC	1.4e-65	96.80	60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1	[more]
RL23_TORRU	8.7e-60	90.40	60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1	[more]
RL23_DANRE	4.5e-56	85.48	60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1	[more]
RL23_PIG	9.9e-56	84.68	60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=1 SV=1	[more]

BLAST of CmoCh17G013320 vs. TrEMBL


Match Name	E-value	Identity	Description
V7BH47_PHAVU	6.2e-65	100.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1	[more]
M5WP13_PRUPE	6.2e-65	100.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1	[more]
M4FGG9_BRARP	6.2e-65	100.00	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1	[more]
R0I605_9BRAS	6.2e-65	100.00	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012532mg PE=3 SV=1	[more]
A0A078J7K6_BRANA	6.2e-65	100.00	BnaC08g50110D protein OS=Brassica napus GN=BnaC08g50110D PE=3 SV=1	[more]

BLAST of CmoCh17G013320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04480.1	3.2e-68	100.00	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	3.2e-68	100.00	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.1	3.2e-68	100.00	Ribosomal protein L14p/L23e family protein	[more]
ATCG00780.1	4.2e-12	33.61	ATCG00780.1 ribosomal protein L14	[more]

BLAST of CmoCh17G013320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|2341028\|gb\|AAB70426.1\|	9.0e-65	100.00	Strong similarity to 60S ribosomal protein L17 (gb\|X01694). EST gb\|AA042332 come...	[more]
gi\|15226102\|ref\|NP_180895.1\|	9.0e-65	100.00	60S ribosomal protein L23B [Arabidopsis thaliana]	[more]
gi\|470120643\|ref\|XP_004296407.1\|	9.0e-65	100.00	PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca]	[more]
gi\|674874230\|emb\|CDY59177.1\|	9.0e-65	100.00	BnaC08g50110D [Brassica napus]	[more]
gi\|565482140\|ref\|XP_006298710.1\|	9.0e-65	100.00	hypothetical protein CARUB_v10014805mg, partial [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000218	Ribosomal_L14P
IPR019972	Ribosomal_L14P_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G013320.1	CmoCh17G013320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	GENE3D	G3DSA:2.40.150.20		coord: 2..125 score: 3.0
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 4..125 score: 19
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..125 score: 3.8E
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 7..125 score: 1.8
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 4..125 score: 3.2
IPR000218	Ribosomal protein L14P	unknown	SSF50193	Ribosomal protein L14	coord: 3..125 score: 1.31
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 64..90 scor
None	No IPR available	PANTHER	PTHR11761:SF10	SUBFAMILY NOT NAMED	coord: 1..125 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G013320	Cla007069	Watermelon (97103) v1	cmowmB347
CmoCh17G013320	Csa6G088070	Cucumber (Chinese Long) v2	cmocuB358
CmoCh17G013320	Cp4.1LG17g09530	Cucurbita pepo (Zucchini)	cmocpeB352
CmoCh17G013320	MELO3C022386.2	Melon (DHL92) v3.6.1	cmomedB353
CmoCh17G013320	CsaV3_6G007430	Cucumber (Chinese Long) v3	cmocucB0433
CmoCh17G013320	Cla97C06G110770	Watermelon (97103) v2	cmowmbB354
CmoCh17G013320	Carg03791	Silver-seed gourd	carcmoB1312
CmoCh17G013320	Carg11543	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G013320	Cucurbita moschata (Rifu)	cmocmoB322
CmoCh17G013320	Cucumber (Gy14) v1	cgycmoB0951
CmoCh17G013320	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G013320	Cucurbita maxima (Rimu)	cmacmoB899
CmoCh17G013320	Wild cucumber (PI 183967)	cmocpiB361
CmoCh17G013320	Melon (DHL92) v3.5.1	cmomeB308
CmoCh17G013320	Watermelon (Charleston Gray)	cmowcgB318
CmoCh17G013320	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G013320	Bottle gourd (USVL1VR-Ls)	cmolsiB322
CmoCh17G013320	Cucumber (Gy14) v2	cgybcmoB734
CmoCh17G013320	Melon (DHL92) v3.6.1	cmomedB386
CmoCh17G013320	Cucumber (Chinese Long) v3	cmocucB0424
CmoCh17G013320	Wax gourd	cmowgoB0456