CmoCh17G013140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G013140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CLIP-associating family protein
Location	Cmo_Chr17 : 10279869 .. 10281403 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACGACCCAAAACTTGGTTGATTGTTTTGCTTTGCTTCCTTTTGCTGTGGGTCGATTTTCGTCTCATAGTTTGTTTTCACACTTGCAGTACTTCAATCAAATTTTGACAGTGATACTGGAAGTGTTTGATAATTCTGATTCCTCAGTACGTGAGCTTGCTCTTTCATTGATAACTGAAATGATTAAGAATCAGGTAAGTTGAACATTATTTTTCTGATGCTTTATGGGATGCTGCATTTGTGCTATTGAACATAACTATTCAACATTTCCGTAGTACTTTGTGGATGATTTTTTCCTTCTTTAGTGTATTCTCATTTTTATCCTTCAATTTGTAATTCCAGAGGGACTCTATGGAAGATTCTGTTGAGATCGTTATTGAGAAACTGCTTCATGTTACCAAGGACATTATTCCCAAAGTAACTTTTCTTAGCATTCTGGAACTTCTTTTGCCTGTCTTTACCCGTCTAAAATTGCTTCCTCTTCCTTGTACCCTTTATTCAGGTATCAAGTGATGCAGAGCATTGCCTGACTGTTGTGTTATCTCAGTATGATCCATTCAGATGCTTAAGTGTATGGATCTTTGCATTCTATTTTTCTCTTCATGGATATCACCTGTGGATAGTTCTTCATTTTCAATTCCTTCACAATTTCATTGATAATATAATGTATCGGGAAAGAGAAAACAATAGCCCTAGAGATGTAGATTTTGTTTTTAAATGATTATTCTGTTTAATTTTTTTTATTTTTTTTTTCACTCAGCTCTTAAGATTATAACATGCGCCATGTACTTTATTTTGCAGGTTATTACTCCTCTGTTGGTTACCGAGGATGAGAAAACTCTTGTTACATGCATCAATTGCTTGACAAAGGTTTATTTTTATTCCTTTAGTAACCTTGTTACAAACTCTTGTTACACGCATATCCCCTGTCCCCGCCCCCGCCCCCGCCCCCGCCCACCCAAGCACACACACACACACAAATAAGATAGTAGTTTTGAGGTTCAAAACTGCCTCCATTTCCCTCTCCAAATTTTCATCCAATAAACTATTCTCACGTACTTCAGAGCATTGTTGCACAGCAGTTACTGTTATTCATTGGTTTTGGATTCTTACCTTCTGCTACTTGGTTTTTCAGCTTGTCGGTCGGCTGTCACAAGAAGAGTTGATGACACAGTTGCCCACTTTTTTGCCTGCTCTCTTTGAAGCATTTGGACACCAGAGTGCTGATGTGAGAAAGGTAATGGCCGACTGTTTTTCGTTCTTTTATTCATCCACAGGAATGATACTCCCCTTGCCCTGCCTGCCTATAAAGTAAAATAAAATAACAAAAGGCATCCACCCATATCTCACGTAGCCTATTCACTGCCAATTTGCTGCAGACTGTTGTCTTCTGTCTTGTTGACATCTACATAATGCTGGGGAAACAATTTTTGCCACACTTGGAGGGACTCAACAGCACTCAACTACGTTTGGTTACAATTTACGCCAATCGAATTTCGCAAGCTAGGACGGGAACCGCCATTGACGCTTAG

mRNA sequence

ATGCAACGACCCAAAACTTGGTTGATTGTTTTGCTTTGCTTCCTTTTGCTGTGGGTCGATTTTCGTCTCATATACTTCAATCAAATTTTGACAGTGATACTGGAAGTGTTTGATAATTCTGATTCCTCAGTACGTGAGCTTGCTCTTTCATTGATAACTGAAATGATTAAGAATCAGAGGGACTCTATGGAAGATTCTGTTGAGATCGTTATTGAGAAACTGCTTCATGTTACCAAGGACATTATTCCCAAAGTATCAAGTGATGCAGAGCATTGCCTGACTGTTGTGTTATCTCAGTATGATCCATTCAGATGCTTAAGTGTTATTACTCCTCTGTTGGTTACCGAGGATGAGAAAACTCTTGTTACATGCATCAATTGCTTGACAAAGCTTGTCGGTCGGCTGTCACAAGAAGAGTTGATGACACAGTTGCCCACTTTTTTGCCTGCTCTCTTTGAAGCATTTGGACACCAGAGTGCTGATGTGAGAAAGGTAATGGCCGACTGTTTTTCGAATGATACTCCCCTTGCCCTGCCTGCCTATAAAGCATCCACCCATATCTCACGTAGCCTATTCACTGCCAATTTGCTGCAGACTGTTGTCTTCTGTCTTGTTGACATCTACATAATGCTGGGGAAACAATTTTTGCCACACTTGGAGGGACTCAACAGCACTCAACTACGTTTGGTTACAATTTACGCCAATCGAATTTCGCAAGCTAGGACGGGAACCGCCATTGACGCTTAG

Coding sequence (CDS)

ATGCAACGACCCAAAACTTGGTTGATTGTTTTGCTTTGCTTCCTTTTGCTGTGGGTCGATTTTCGTCTCATATACTTCAATCAAATTTTGACAGTGATACTGGAAGTGTTTGATAATTCTGATTCCTCAGTACGTGAGCTTGCTCTTTCATTGATAACTGAAATGATTAAGAATCAGAGGGACTCTATGGAAGATTCTGTTGAGATCGTTATTGAGAAACTGCTTCATGTTACCAAGGACATTATTCCCAAAGTATCAAGTGATGCAGAGCATTGCCTGACTGTTGTGTTATCTCAGTATGATCCATTCAGATGCTTAAGTGTTATTACTCCTCTGTTGGTTACCGAGGATGAGAAAACTCTTGTTACATGCATCAATTGCTTGACAAAGCTTGTCGGTCGGCTGTCACAAGAAGAGTTGATGACACAGTTGCCCACTTTTTTGCCTGCTCTCTTTGAAGCATTTGGACACCAGAGTGCTGATGTGAGAAAGGTAATGGCCGACTGTTTTTCGAATGATACTCCCCTTGCCCTGCCTGCCTATAAAGCATCCACCCATATCTCACGTAGCCTATTCACTGCCAATTTGCTGCAGACTGTTGTCTTCTGTCTTGTTGACATCTACATAATGCTGGGGAAACAATTTTTGCCACACTTGGAGGGACTCAACAGCACTCAACTACGTTTGGTTACAATTTACGCCAATCGAATTTCGCAAGCTAGGACGGGAACCGCCATTGACGCTTAG

Homology

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BLAST of CmoCh17G013140 vs. Swiss-Prot
Match: CLASP_ARATH (CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.1e-69
Identity = 146/224 (65.18%), Postives = 168/224 (75.00%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LEV D+ D S++ELALSLI+EM+K+Q+D+MEDSVEIVIEKLLHV+KD +PK
Sbjct: 1248 YFNQILTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPK 1307

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS++AE CLT VLSQYDPFRCLSVI PLLVTEDEKTLV CINCLTKLVGRLSQEELM QL
Sbjct: 1308 VSTEAEQCLTTVLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQL 1367

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
             +F                           P    A+ + +        A++ +TVVFCL
Sbjct: 1368 SSF--------------------------LPAVFEAFGSQS--------ADVRKTVVFCL 1427

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLP+LEGLNSTQ+RLVTIYANRISQAR G  IDA
Sbjct: 1428 VDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARNGAPIDA 1437

[Close]

BLAST of CmoCh17G013140 vs. Swiss-Prot
Match: CLAP2_MOUSE (CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-14
Identity = 55/221 (24.89%), Postives = 104/221 (47.06%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            +F  IL ++LE   + + ++R LAL ++ E++++Q    ++  E+ + K L   KD   +
Sbjct: 1091 HFKTILLLLLETLGDKEPTIRALALKVLKEILRHQPARFKNYAELTVMKTLEAHKDPHKE 1150

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V   AE   +V+ +   P +C+ V+ P++ T D    +  I   TK++ R+S+E L   L
Sbjct: 1151 VVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNMLL 1210

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P  +P L + + +  + VRK    C      +A+ A                        
Sbjct: 1211 PEIMPGLIQGYDNSESSVRKACVFCL-----VAVHAV----------------------- 1270

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTA 246
                  +G +  PHL  L  ++++L+ +Y   I +A+TG+A
Sbjct: 1271 ------IGDELKPHLSQLTGSKMKLLNLY---IKRAQTGSA 1274

[Close]

BLAST of CmoCh17G013140 vs. Swiss-Prot
Match: CLAP2_RAT (CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-14
Identity = 55/221 (24.89%), Postives = 104/221 (47.06%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            +F  IL ++LE   + + ++R LAL ++ E++++Q    ++  E+ + K L   KD   +
Sbjct: 1091 HFKTILLLLLETLGDKEPTIRALALKVLKEILRHQPARFKNYAELTVMKTLEAHKDPHKE 1150

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V   AE   +V+ +   P +C+ V+ P++ T D    +  I   TK++ R+S+E L   L
Sbjct: 1151 VVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLL 1210

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P  +P L + + +  + VRK    C      +A+ A                        
Sbjct: 1211 PEIMPGLIQGYDNSESSVRKACVFCL-----VAVHAV----------------------- 1270

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTA 246
                  +G +  PHL  L  ++++L+ +Y   I +A+TG+A
Sbjct: 1271 ------IGDELKPHLSQLTGSKMKLLNLY---IKRAQTGSA 1274

[Close]

BLAST of CmoCh17G013140 vs. Swiss-Prot
Match: CLAP2_HUMAN (CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 6.4e-14
Identity = 54/220 (24.55%), Postives = 103/220 (46.82%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            +F  IL ++LE   + + ++R LAL ++ E++++Q    ++  E+ + K L   KD   +
Sbjct: 1099 HFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKE 1158

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V   AE   +V+ +   P +C+ V+ P++ T D    +  I   TK++ R+S+E L   L
Sbjct: 1159 VVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLL 1218

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P  +P L + + +  + VRK    C      +A+ A                        
Sbjct: 1219 PEIMPGLIQGYDNSESSVRKACVFCL-----VAVHAV----------------------- 1278

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT 245
                  +G +  PHL  L  ++++L+ +Y   I +A+TG+
Sbjct: 1279 ------IGDELKPHLSQLTGSKMKLLNLY---IKRAQTGS 1281

[Close]

BLAST of CmoCh17G013140 vs. Swiss-Prot
Match: CLAP1_HUMAN (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13
Identity = 56/221 (25.34%), Postives = 101/221 (45.70%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            +F  IL ++LE   + D S+R LAL ++ E+++NQ    ++  E+ I K L   KD   +
Sbjct: 1343 HFKTILLLLLETLGDKDHSIRALALRVLREILRNQPARFKNYAELTIMKTLEAHKDSHKE 1402

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V   AE   + + S   P +C+ V+ P++ T D    +  I   TK+V R+++E L+  L
Sbjct: 1403 VVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLL 1462

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
               +P                            L  Y  +         +++ +  VFCL
Sbjct: 1463 VDIIPG--------------------------LLQGYDNTE--------SSVRKASVFCL 1522

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTA 246
            V IY ++G+   PHL  L  ++++L+ +Y  R     + ++
Sbjct: 1523 VAIYSVIGEDLKPHLAQLTGSKMKLLNLYIKRAQTTNSNSS 1529

[Close]

BLAST of CmoCh17G013140 vs. TrEMBL
Match: A0A0A0K9T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G330400 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 171/223 (76.68%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV LEV DNSD SVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVT DIIPK
Sbjct: 1250 YFNQILTVTLEVLDNSDFSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTNDIIPK 1309

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS+DAEHCLT+VLSQYDPFRCLSVI PLLVTEDEKTLVTCINCLTKLVGRLSQEELM+QL
Sbjct: 1310 VSNDAEHCLTIVLSQYDPFRCLSVIAPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQL 1369

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            PTFLPAL                             ++A  H S     A++ +TVVFCL
Sbjct: 1370 PTFLPAL-----------------------------FEAFGHQS-----ADVRKTVVFCL 1429

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAID 248
            VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT ID
Sbjct: 1430 VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTTID 1438

[Close]

BLAST of CmoCh17G013140 vs. TrEMBL
Match: A0A164Z443_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018539 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 162/224 (72.32%), Postives = 184/224 (82.14%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LE+ D+SDSS+RELAL L+ EM+KNQ+D MEDSVEIVIE+LLHVTKD + K
Sbjct: 1241 YFNQILTVVLEILDDSDSSIRELALLLVVEMLKNQKDPMEDSVEIVIERLLHVTKDPVAK 1300

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V+S+AE CLT+VLSQYDPFRCLSV+ PLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL
Sbjct: 1301 VASEAESCLTLVLSQYDPFRCLSVVVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 1360

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P+FLP++FEAFG+QSADVRKV+A                           ++  TVVFCL
Sbjct: 1361 PSFLPSIFEAFGNQSADVRKVLA-------------------------VISISNTVVFCL 1420

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLP+LEGLNSTQLRLVTIYANRIS ARTGT I+A
Sbjct: 1421 VDIYIMLGKAFLPYLEGLNSTQLRLVTIYANRISLARTGTPIEA 1439

[Close]

BLAST of CmoCh17G013140 vs. TrEMBL
Match: D7L5A5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899844 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.4e-68
Identity = 148/224 (66.07%), Postives = 169/224 (75.45%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LEV D+ D S+RELALSLI+EM+K+Q+D+MEDSVEIVIEKLLHV+KD +PK
Sbjct: 1248 YFNQILTVVLEVLDDEDFSIRELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPK 1307

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS++AE CLT VLSQYDPFRCLSVI PLLVTEDEKTLV CINCLTKLVGRLSQEELM QL
Sbjct: 1308 VSTEAEQCLTTVLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQL 1367

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
             +F                           P    A+ + +        A++ +TVVFCL
Sbjct: 1368 SSF--------------------------LPAVFEAFGSQS--------ADVRKTVVFCL 1427

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLP+LEGLNSTQ+RLVTIYANRISQARTG  IDA
Sbjct: 1428 VDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARTGAPIDA 1437

[Close]

BLAST of CmoCh17G013140 vs. TrEMBL
Match: A0A078HQ60_BRANA (BnaA09g10130D protein OS=Brassica napus GN=BnaA09g10130D PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-67
Identity = 147/224 (65.62%), Postives = 167/224 (74.55%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LEV D+ D SVRE+ALSLI+EM+K+Q+D+MEDSVEIVIEKLLHV+KD +PK
Sbjct: 1242 YFNQILTVVLEVVDDEDFSVREVALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDSVPK 1301

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS +AE CLT VLSQYDPFRCLSVI PLLVTEDEKTLV CINCLTKLVGRLSQEELM QL
Sbjct: 1302 VSGEAEQCLTTVLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQL 1361

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
                           +     + + F N +                   A++ +TVVFCL
Sbjct: 1362 ---------------SSFLPAVFEAFGNQS-------------------ADVRKTVVFCL 1421

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLPHLEGLNSTQ+RLVTIYANRISQARTG  ID+
Sbjct: 1422 VDIYIMLGKAFLPHLEGLNSTQVRLVTIYANRISQARTGAPIDS 1431

[Close]

BLAST of CmoCh17G013140 vs. TrEMBL
Match: A0A0D9VIC3_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-67
Identity = 141/224 (62.95%), Postives = 171/224 (76.34%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILT +LEV D+SDSS+REL+LSL+ EM+ NQ+DSME+S+EIV+EKLLHVTKD++ K
Sbjct: 1051 YFNQILTSVLEVLDDSDSSIRELSLSLVAEMLHNQKDSMEESIEIVLEKLLHVTKDVMAK 1110

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS++A  CL VVL++YDPFRCL+VI PLLV++DEK LVTC NCLTKLVGRLS+EELMTQL
Sbjct: 1111 VSNEANQCLNVVLAKYDPFRCLAVIVPLLVSDDEKMLVTCTNCLTKLVGRLSEEELMTQL 1170

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P+FLPAL                D F+N +P                   ++ +TVVFCL
Sbjct: 1171 PSFLPAL---------------FDAFNNQSP-------------------DVRKTVVFCL 1230

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK F P+LEGLNSTQ+RLVTIYANRISQAR+G  +DA
Sbjct: 1231 VDIYIMLGKAFAPYLEGLNSTQMRLVTIYANRISQARSGAPVDA 1240

[Close]

BLAST of CmoCh17G013140 vs. TAIR10
Match: AT2G20190.1 (AT2G20190.1 CLIP-associated protein)

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 146/224 (65.18%), Postives = 168/224 (75.00%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LEV D+ D S++ELALSLI+EM+K+Q+D+MEDSVEIVIEKLLHV+KD +PK
Sbjct: 1248 YFNQILTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPK 1307

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS++AE CLT VLSQYDPFRCLSVI PLLVTEDEKTLV CINCLTKLVGRLSQEELM QL
Sbjct: 1308 VSTEAEQCLTTVLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQL 1367

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
             +F                           P    A+ + +        A++ +TVVFCL
Sbjct: 1368 SSF--------------------------LPAVFEAFGSQS--------ADVRKTVVFCL 1427

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLP+LEGLNSTQ+RLVTIYANRISQAR G  IDA
Sbjct: 1428 VDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARNGAPIDA 1437

[Close]

BLAST of CmoCh17G013140 vs. NCBI nr
Match: gi|659124113|ref|XP_008461995.1| (PREDICTED: CLIP-associated protein isoform X1 [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 8.8e-80
Identity = 171/223 (76.68%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV LEV DNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVT DI PK
Sbjct: 1250 YFNQILTVTLEVLDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTNDIFPK 1309

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS+DAEHCLT+VLSQYDPFRCLSVI PLLVTEDEKTLVTCINCLTKLVGRLSQEELM+QL
Sbjct: 1310 VSNDAEHCLTIVLSQYDPFRCLSVIAPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQL 1369

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            PTFLPAL                             ++A  H S     A++ +TVVFCL
Sbjct: 1370 PTFLPAL-----------------------------FEAFGHQS-----ADVRKTVVFCL 1429

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAID 248
            VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT ID
Sbjct: 1430 VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTTID 1438

[Close]

BLAST of CmoCh17G013140 vs. NCBI nr
Match: gi|659124115|ref|XP_008461996.1| (PREDICTED: CLIP-associated protein isoform X2 [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 8.8e-80
Identity = 171/223 (76.68%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV LEV DNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVT DI PK
Sbjct: 1223 YFNQILTVTLEVLDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTNDIFPK 1282

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS+DAEHCLT+VLSQYDPFRCLSVI PLLVTEDEKTLVTCINCLTKLVGRLSQEELM+QL
Sbjct: 1283 VSNDAEHCLTIVLSQYDPFRCLSVIAPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQL 1342

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            PTFLPAL                             ++A  H S     A++ +TVVFCL
Sbjct: 1343 PTFLPAL-----------------------------FEAFGHQS-----ADVRKTVVFCL 1402

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAID 248
            VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT ID
Sbjct: 1403 VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTTID 1411

[Close]

BLAST of CmoCh17G013140 vs. NCBI nr
Match: gi|449443746|ref|XP_004139638.1| (PREDICTED: CLIP-associated protein isoform X1 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 171/223 (76.68%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV LEV DNSD SVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVT DIIPK
Sbjct: 1250 YFNQILTVTLEVLDNSDFSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTNDIIPK 1309

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS+DAEHCLT+VLSQYDPFRCLSVI PLLVTEDEKTLVTCINCLTKLVGRLSQEELM+QL
Sbjct: 1310 VSNDAEHCLTIVLSQYDPFRCLSVIAPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQL 1369

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            PTFLPAL                             ++A  H S     A++ +TVVFCL
Sbjct: 1370 PTFLPAL-----------------------------FEAFGHQS-----ADVRKTVVFCL 1429

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAID 248
            VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT ID
Sbjct: 1430 VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTTID 1438

[Close]

BLAST of CmoCh17G013140 vs. NCBI nr
Match: gi|778726799|ref|XP_011659162.1| (PREDICTED: CLIP-associated protein isoform X2 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 171/223 (76.68%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV LEV DNSD SVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVT DIIPK
Sbjct: 1223 YFNQILTVTLEVLDNSDFSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTNDIIPK 1282

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            VS+DAEHCLT+VLSQYDPFRCLSVI PLLVTEDEKTLVTCINCLTKLVGRLSQEELM+QL
Sbjct: 1283 VSNDAEHCLTIVLSQYDPFRCLSVIAPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQL 1342

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            PTFLPAL                             ++A  H S     A++ +TVVFCL
Sbjct: 1343 PTFLPAL-----------------------------FEAFGHQS-----ADVRKTVVFCL 1402

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAID 248
            VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGT ID
Sbjct: 1403 VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTTID 1411

[Close]

BLAST of CmoCh17G013140 vs. NCBI nr
Match: gi|1021037514|gb|KZM95297.1| (hypothetical protein DCAR_018539 [Daucus carota subsp. sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 162/224 (72.32%), Postives = 184/224 (82.14%), Query Frame = 1


Query: 25   YFNQILTVILEVFDNSDSSVRELALSLITEMIKNQRDSMEDSVEIVIEKLLHVTKDIIPK 84
            YFNQILTV+LE+ D+SDSS+RELAL L+ EM+KNQ+D MEDSVEIVIE+LLHVTKD + K
Sbjct: 1241 YFNQILTVVLEILDDSDSSIRELALLLVVEMLKNQKDPMEDSVEIVIERLLHVTKDPVAK 1300

Query: 85   VSSDAEHCLTVVLSQYDPFRCLSVITPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 144
            V+S+AE CLT+VLSQYDPFRCLSV+ PLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL
Sbjct: 1301 VASEAESCLTLVLSQYDPFRCLSVVVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQL 1360

Query: 145  PTFLPALFEAFGHQSADVRKVMADCFSNDTPLALPAYKASTHISRSLFTANLLQTVVFCL 204
            P+FLP++FEAFG+QSADVRKV+A                           ++  TVVFCL
Sbjct: 1361 PSFLPSIFEAFGNQSADVRKVLA-------------------------VISISNTVVFCL 1420

Query: 205  VDIYIMLGKQFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA 249
            VDIYIMLGK FLP+LEGLNSTQLRLVTIYANRIS ARTGT I+A
Sbjct: 1421 VDIYIMLGKAFLPYLEGLNSTQLRLVTIYANRISLARTGTPIEA 1439

The following BLAST results are available for this feature:

BLAST of CmoCh17G013140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLASP_ARATH	4.1e-69	65.18	CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1	[more]
CLAP2_MOUSE	2.2e-14	24.89	CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1	[more]
CLAP2_RAT	2.2e-14	24.89	CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=1 SV=1	[more]
CLAP2_HUMAN	6.4e-14	24.55	CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2	[more]
CLAP1_HUMAN	1.1e-13	25.34	CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1	[more]

BLAST of CmoCh17G013140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9T3_CUCSA	1.0e-79	76.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G330400 PE=4 SV=1	[more]
A0A164Z443_DAUCA	1.0e-79	72.32	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018539 PE=4 SV=1	[more]
D7L5A5_ARALL	5.4e-68	66.07	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A078HQ60_BRANA	2.7e-67	65.63	BnaA09g10130D protein OS=Brassica napus GN=BnaA09g10130D PE=4 SV=1	[more]
A0A0D9VIC3_9ORYZ	2.7e-67	62.95	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CmoCh17G013140 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20190.1	2.3e-70	65.18	CLIP-associated protein	[more]

BLAST of CmoCh17G013140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124113\|ref\|XP_008461995.1\|	8.8e-80	76.68	PREDICTED: CLIP-associated protein isoform X1 [Cucumis melo]	[more]
gi\|659124115\|ref\|XP_008461996.1\|	8.8e-80	76.68	PREDICTED: CLIP-associated protein isoform X2 [Cucumis melo]	[more]
gi\|449443746\|ref\|XP_004139638.1\|	1.5e-79	76.68	PREDICTED: CLIP-associated protein isoform X1 [Cucumis sativus]	[more]
gi\|778726799\|ref\|XP_011659162.1\|	1.5e-79	76.68	PREDICTED: CLIP-associated protein isoform X2 [Cucumis sativus]	[more]
gi\|1021037514\|gb\|KZM95297.1\|	1.5e-79	72.32	hypothetical protein DCAR_018539 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0048767	root hair elongation
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0050821	protein stabilization
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0007026	negative regulation of microtubule depolymerization
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0007067	mitotic nuclear division
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0071555	cell wall organization
biological_process	GO:0030243	cellulose metabolic process
biological_process	GO:0009932	cell tip growth
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005938	cell cortex
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005876	spindle microtubule
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0005488	binding
molecular_function	GO:0051010	microtubule plus-end binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G013140.1	CmoCh17G013140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 25..191 score: 6.2
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 10..222 score: 1.97
None	No IPR available	PANTHER	PTHR21567	CLASP	coord: 199..248 score: 1.7E-93coord: 25..164 score: 1.7
None	No IPR available	PANTHER	PTHR21567:SF9	CLIP-ASSOCIATING PROTEIN	coord: 199..248 score: 1.7E-93coord: 25..164 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G013140	CmaCh17G013550	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G013140	Cp4.1LG12g10350	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G013140	Cp4.1LG17g09610	Cucurbita pepo (Zucchini)	cmocpeB352
CmoCh17G013140	Carg11526	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G013140	CmoCh08G000530	Cucurbita moschata (Rifu)	cmocmoB322

The following block(s) are covering this gene:

None