CmoCh17G013010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G013010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPoly(A)-specific ribonuclease PARN-like
LocationCmo_Chr17 : 10207630 .. 10208804 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCGGTTCTCATCCCTCCGGTTGCAGAGGCGCCGCCTGCATACTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACACCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCTCATCCGTAAGTCCCGCCGCCGCTTCTCTTCGTTTGTACGTTGGGGCGGGGGTCGGGGATTGGGAGTTTCTTTATATTACTGATTTCGTTTTTCTTTACTTGGTATGGATTTGGATGCTTCTTGATACGTAGTTGATGTTGAAAGCGAGCATGGAAATTGGAATTGAACGATATTTCTTTCATTGGAATCTAGAGTAGGGATTTGTAGTCAATCTTTTTCATTATTGTCATATGGGTAGAATTTGTAATGGAAGGTGGTAATGGGAAATTTGATGCCTTCTGGCTGATGTTTGGACAATGGTTTTTGCTTATGGGTTGCCTGTTCATCATTAGTTGAAATTCTAAACTCGAGGCCTCTTGTTTGATGAGTGATACAAATTTGATTGCTTATAATTATTTTGCATGATACATGCCTTCCTGTTACTTGCATCTTAGGTCATGGCAGTACCATCTGTAATTCGTGTTTTTTGCCTGTGAATTACGGCTGTCAGATCAAAGCTCTAGCGTTCTATTTCATGTGTGTCCCTGCCGTCACTGATCAGCTACGTTTCCTTCAATGGTATAGGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCTTATTGTGGACTATTTACTTCGGTTTCTCACTCACTGACCTCAAGACTTGAGATTTGCGACAGACACCATAGCTATTTATAGAAGAGTAATTTTGCAACCCAGATTTCCAGTCTCTAAACCACCTTCGTTGCAAGGTTTCAACAAGAGCAAAGGATGA

mRNA sequence

ATGGCGTCTCGGTTCTCATCCCTCCGGTTGCAGAGGCGCCGCCTGCATACTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACACCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCTCATCCGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGACTTGAGATTTGCGACAGACACCATAGCTATTTATAGAAGAGTAATTTTGCAACCCAGATTTCCAGTCTCTAAACCACCTTCGTTGCAAGGTTTCAACAAGAGCAAAGGATGA

Coding sequence (CDS)

ATGGCGTCTCGGTTCTCATCCCTCCGGTTGCAGAGGCGCCGCCTGCATACTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACACCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCTCATCCGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGACTTGAGATTTGCGACAGACACCATAGCTATTTATAGAAGAGTAATTTTGCAACCCAGATTTCCAGTCTCTAAACCACCTTCGTTGCAAGGTTTCAACAAGAGCAAAGGATGA
Homology
[Close]
BLAST of CmoCh17G013010 vs. Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 83/132 (62.88%), Postives = 106/132 (80.30%), Query Frame = 1 

Query: 23  SVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYCKAKYA 82
           SV+Q++ ++F+  L +++  I  SDFIALSLQNTGS +  WHR+ + DT  T+Y KAKYA
Sbjct: 25  SVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYA 84

Query: 83  AEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAREGF 142
           AE++QILQFALCPFS++ SKL  HPYNFHLFPRD+L  GMPSYSFSCQ S LT+MAREGF
Sbjct: 85  AERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGF 144

Query: 143 DFDACIYDDLRF 155
           DF+ CIY+ + +
Sbjct: 145 DFNICIYEGISY 156

[Close]
BLAST of CmoCh17G013010 vs. Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 49/140 (35.00%), Postives = 84/140 (60.00%), Query Frame = 1 

Query: 17  TATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAY 76
           +AT    ++ +  ++F   L DL++ +  +DF+A+ L+ TG +S PW     FD YD  Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 77  CKAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHL 136
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR +L    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 137 TSMAREGFDFDACIYDDLRF 155
             +A+  FDF+ CI++ + +
Sbjct: 151 DFLAKYQFDFNTCIHEGISY 170

[Close]
BLAST of CmoCh17G013010 vs. TrEMBL
Match: A0A067LKN4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15105 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 92/139 (66.19%), Postives = 115/139 (82.73%), Query Frame = 1 

Query: 16  HTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTA 75
           H   +Q +V+Q+  ++F   L ++K+HIS SDFIA+SLQ TGS S PWHR+  FDT DTA
Sbjct: 21  HQTNSQWNVKQVTKSNFTNSLEEVKSHISTSDFIAVSLQKTGSFSSPWHRVSPFDTADTA 80

Query: 76  YCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 135
           Y KAK+ AE+FQ+LQFA+CPF+VR SK+ A+PYNFHLFPRD+LNIGMPSYSFSCQ S+LT
Sbjct: 81  YLKAKHVAERFQVLQFAVCPFTVRASKITAYPYNFHLFPRDELNIGMPSYSFSCQTSYLT 140

Query: 136 SMAREGFDFDACIYDDLRF 155
           SMAREGFDF+ACIYD + +
Sbjct: 141 SMAREGFDFNACIYDGISY 159

[Close]
BLAST of CmoCh17G013010 vs. TrEMBL
Match: A0A067ETQ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006991mg PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 94/162 (58.02%), Postives = 124/162 (76.54%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLS-----VRQIRNTDFYGCLGDLKNHISDSDFIALSLQN 60
           M  +F    L+ R   T T Q +     ++QI  T+F   L ++KNHIS SDFIA+SLQN
Sbjct: 1   MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60

Query: 61  TGSSSFPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPR 120
           TGS S PWHR+ +FDT +TAY KAK+AAE+FQILQFA+CPF ++ SK+IA+PYNFHLFPR
Sbjct: 61  TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120

Query: 121 DDLNIGMPSYSFSCQVSHLTSMAREGFDFDACIYDDLRFATD 158
           D+L +GMPSYSF+CQ S+LT+MA+EGFDF+ CIYD + + ++
Sbjct: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSE 162

[Close]
BLAST of CmoCh17G013010 vs. TrEMBL
Match: A0A067EXE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006991mg PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 94/162 (58.02%), Postives = 124/162 (76.54%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLS-----VRQIRNTDFYGCLGDLKNHISDSDFIALSLQN 60
           M  +F    L+ R   T T Q +     ++QI  T+F   L ++KNHIS SDFIA+SLQN
Sbjct: 1   MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60

Query: 61  TGSSSFPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPR 120
           TGS S PWHR+ +FDT +TAY KAK+AAE+FQILQFA+CPF ++ SK+IA+PYNFHLFPR
Sbjct: 61  TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120

Query: 121 DDLNIGMPSYSFSCQVSHLTSMAREGFDFDACIYDDLRFATD 158
           D+L +GMPSYSF+CQ S+LT+MA+EGFDF+ CIYD + + ++
Sbjct: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSE 162

[Close]
BLAST of CmoCh17G013010 vs. TrEMBL
Match: A0A0B0P0V4_GOSAR (Poly(A)-specific ribonuclease PARN-like OS=Gossypium arboreum GN=F383_04661 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.4e-46
Identity = 90/151 (59.60%), Postives = 118/151 (78.15%), Query Frame = 1 

Query: 16  HTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTA 75
           H    Q SV+Q+  ++F   L + K+H+S SDF+A+SLQNTGS S PW+R+ SFD+ +TA
Sbjct: 19  HRHKLQWSVKQVTKSNFSDSLQEFKSHLSASDFVAVSLQNTGSFSAPWNRVSSFDSPETA 78

Query: 76  YCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 135
           Y K + AAE+FQ+LQFA+CPF++  SK+ AHPYNFHLFPRD+LNIGMPSYSFSCQ S+LT
Sbjct: 79  YLKVRRAAERFQLLQFAICPFTISGSKVTAHPYNFHLFPRDELNIGMPSYSFSCQTSYLT 138

Query: 136 SMAREGFDFDACIYDDLRF---ATDTIAIYR 164
           +MAR+GFDF+ACIYD + +   A +  AI R
Sbjct: 139 AMARQGFDFNACIYDGISYLSRAQELAAIVR 169

[Close]
BLAST of CmoCh17G013010 vs. TrEMBL
Match: A0A0B0P3J0_GOSAR (Poly(A)-specific ribonuclease PARN-like OS=Gossypium arboreum GN=F383_04661 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.4e-46
Identity = 90/151 (59.60%), Postives = 118/151 (78.15%), Query Frame = 1 

Query: 16  HTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTA 75
           H    Q SV+Q+  ++F   L + K+H+S SDF+A+SLQNTGS S PW+R+ SFD+ +TA
Sbjct: 19  HRHKLQWSVKQVTKSNFSDSLQEFKSHLSASDFVAVSLQNTGSFSAPWNRVSSFDSPETA 78

Query: 76  YCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 135
           Y K + AAE+FQ+LQFA+CPF++  SK+ AHPYNFHLFPRD+LNIGMPSYSFSCQ S+LT
Sbjct: 79  YLKVRRAAERFQLLQFAICPFTISGSKVTAHPYNFHLFPRDELNIGMPSYSFSCQTSYLT 138

Query: 136 SMAREGFDFDACIYDDLRF---ATDTIAIYR 164
           +MAR+GFDF+ACIYD + +   A +  AI R
Sbjct: 139 AMARQGFDFNACIYDGISYLSRAQELAAIVR 169

[Close]
BLAST of CmoCh17G013010 vs. TAIR10
Match: AT3G25430.1 (AT3G25430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 184.5 bits (467), Expect = 6.0e-47
Identity = 83/132 (62.88%), Postives = 106/132 (80.30%), Query Frame = 1 

Query: 23  SVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYCKAKYA 82
           SV+Q++ ++F+  L +++  I  SDFIALSLQNTGS +  WHR+ + DT  T+Y KAKYA
Sbjct: 25  SVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYA 84

Query: 83  AEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAREGF 142
           AE++QILQFALCPFS++ SKL  HPYNFHLFPRD+L  GMPSYSFSCQ S LT+MAREGF
Sbjct: 85  AERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGF 144

Query: 143 DFDACIYDDLRF 155
           DF+ CIY+ + +
Sbjct: 145 DFNICIYEGISY 156

[Close]
BLAST of CmoCh17G013010 vs. TAIR10
Match: AT1G55870.1 (AT1G55870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 49/140 (35.00%), Postives = 84/140 (60.00%), Query Frame = 1 

Query: 17  TATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAY 76
           +AT    ++ +  ++F   L DL++ +  +DF+A+ L+ TG +S PW     FD YD  Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 77  CKAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHL 136
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR +L    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 137 TSMAREGFDFDACIYDDLRF 155
             +A+  FDF+ CI++ + +
Sbjct: 151 DFLAKYQFDFNTCIHEGISY 170

[Close]
BLAST of CmoCh17G013010 vs. NCBI nr
Match: gi|659101496|ref|XP_008451634.1| (PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 9.3e-66
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFS  +L RR   T T+Q S++Q+RN++F+ CLGDLKNHISDSDFIALSLQ TGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHSCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHR Q FDT DTAYCKAKYAAEKFQILQF+LCPFSVR+SKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDDLRF 155
           GMPSYSFSCQVSHLTS+AREGFDF A +YD + +
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDGISY 154

[Close]
BLAST of CmoCh17G013010 vs. NCBI nr
Match: gi|449462471|ref|XP_004148964.1| (PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 7.9e-65
Identity = 124/154 (80.52%), Postives = 138/154 (89.61%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFS  +L RR L+T T+Q SVRQ+RN++F G L DLKN ISDSDFIALSLQ TGSSS
Sbjct: 1   MASRFSYFQLHRR-LYTTTSQWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQ FDT+DTAYCKAKYAAEKFQI+QF+LCPFSVR+SKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDDLRF 155
           GMPSYSFSCQVSHLTSMAREGFDF A +YD + +
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISY 153

[Close]
BLAST of CmoCh17G013010 vs. NCBI nr
Match: gi|659131017|ref|XP_008465473.1| (PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X2 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 7.9e-65
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFS  +L RR   T T+Q S++Q+RN++F+GCLGDLKNHISDSDFIA  LQ TGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHR Q FDT DTAYCKAKYAAEKFQILQF+LCPFSVR+SKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDD 152
           GMPSYSFSCQVSHLTS+ARE FDF A +YDD
Sbjct: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDD 151

[Close]
BLAST of CmoCh17G013010 vs. NCBI nr
Match: gi|659131015|ref|XP_008465472.1| (PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X1 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.9e-64
Identity = 120/150 (80.00%), Postives = 133/150 (88.67%), Query Frame = 1 

Query: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFS  +L RR   T T+Q S++Q+RN++F+GCLGDLKNHISDSDFIA  LQ TGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHR Q FDT DTAYCKAKYAAEKFQILQF+LCPFSVR+SKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYD 151
           GMPSYSFSCQVSHLTS+ARE FDF A +YD
Sbjct: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYD 150

[Close]
BLAST of CmoCh17G013010 vs. NCBI nr
Match: gi|643739486|gb|KDP45240.1| (hypothetical protein JCGZ_15105 [Jatropha curcas])

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-49
Identity = 92/139 (66.19%), Postives = 115/139 (82.73%), Query Frame = 1 

Query: 16  HTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTA 75
           H   +Q +V+Q+  ++F   L ++K+HIS SDFIA+SLQ TGS S PWHR+  FDT DTA
Sbjct: 21  HQTNSQWNVKQVTKSNFTNSLEEVKSHISTSDFIAVSLQKTGSFSSPWHRVSPFDTADTA 80

Query: 76  YCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 135
           Y KAK+ AE+FQ+LQFA+CPF+VR SK+ A+PYNFHLFPRD+LNIGMPSYSFSCQ S+LT
Sbjct: 81  YLKAKHVAERFQVLQFAVCPFTVRASKITAYPYNFHLFPRDELNIGMPSYSFSCQTSYLT 140

Query: 136 SMAREGFDFDACIYDDLRF 155
           SMAREGFDF+ACIYD + +
Sbjct: 141 SMAREGFDFNACIYDGISY 159

The following BLAST results are available for this feature:
BLAST of CmoCh17G013010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PARNL_ARATH1.1e-4562.88Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=... [more]
PARN_ARATH3.0e-2435.00Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2[more]
BLAST of CmoCh17G013010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067LKN4_JATCU1.9e-4966.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15105 PE=4 SV=1[more]
A0A067ETQ9_CITSI1.4e-4758.02Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006991mg PE=4 SV=1[more]
A0A067EXE0_CITSI1.4e-4758.02Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006991mg PE=4 SV=1[more]
A0A0B0P0V4_GOSAR4.4e-4659.60Poly(A)-specific ribonuclease PARN-like OS=Gossypium arboreum GN=F383_04661 PE=4... [more]
A0A0B0P3J0_GOSAR4.4e-4659.60Poly(A)-specific ribonuclease PARN-like OS=Gossypium arboreum GN=F383_04661 PE=4... [more]
BLAST of CmoCh17G013010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25430.16.0e-4762.88 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G55870.11.7e-2535.00 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmoCh17G013010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101496|ref|XP_008451634.1|9.3e-6679.22PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo][more]
gi|449462471|ref|XP_004148964.1|7.9e-6580.52PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis sativus][more]
gi|659131017|ref|XP_008465473.1|7.9e-6580.13PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X2 [Cucumis melo][more]
gi|659131015|ref|XP_008465472.1|3.9e-6480.00PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X1 [Cucumis melo][more]
gi|643739486|gb|KDP45240.1|2.7e-4966.19hypothetical protein JCGZ_15105 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013010.1CmoCh17G013010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 27..157
score: 3.7
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 13..146
score: 1.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 24..155
score: 5.31
NoneNo IPR availablePANTHERPTHR15092POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1coord: 16..150
score: 3.8
NoneNo IPR availablePANTHERPTHR15092:SF28POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKEcoord: 16..150
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G013010Silver-seed gourdcarcmoB0021
CmoCh17G013010Silver-seed gourdcarcmoB0112
CmoCh17G013010Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G013010Watermelon (97103) v2cmowmbB373
CmoCh17G013010Wax gourdcmowgoB0492
CmoCh17G013010Cucurbita moschata (Rifu)cmocmoB311
CmoCh17G013010Cucumber (Gy14) v1cgycmoB1076
CmoCh17G013010Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G013010Cucurbita maxima (Rimu)cmacmoB888
CmoCh17G013010Wild cucumber (PI 183967)cmocpiB377
CmoCh17G013010Cucumber (Chinese Long) v2cmocuB374
CmoCh17G013010Melon (DHL92) v3.5.1cmomeB315
CmoCh17G013010Watermelon (Charleston Gray)cmowcgB302
CmoCh17G013010Watermelon (97103) v1cmowmB325
CmoCh17G013010Cucurbita pepo (Zucchini)cmocpeB355
CmoCh17G013010Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G013010Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G013010Cucumber (Gy14) v2cgybcmoB903
CmoCh17G013010Melon (DHL92) v3.6.1cmomedB360