CmoCh17G012820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr17 : 10069772 .. 10071005 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGAAAAGGGTGGGAATTAGATTAATATTAACATCTTTTGTTTTATGTACCATTAGGTGAATCAAAAGATGATCCTCACCTTAACTGCAAGTATCATGTACTGGTTTCTCTTGAAACAAGGAGGCGAAGAGAAAGGTTGGACAAGTTCAGACAGTGAAAACAGCAGCCAATCAGAGGTTGTTTCGAACTCGACGACCGATGACTCAGCCTCCGAGTCATCAGCAGACGAAAATGGTAACATGTAAATCAAACATGAAACAAAATTCCAATGATGATTACATTCTTTTTAGCTGTTTAATTTTCAATTGGAATTTGTGATTGCAAAAGAATGTGTATTGGGTAATGGGGCATTTTATAGGAAGTAGAAATCAAAGTGCTTTTTGAAAGGTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGAAAGGTTTTTTTTTTTTTTTTTTGCTCGCTGCAGAATCTGCCGCGAGCTGTGA

mRNA sequence

ATGAAGTTGAAAAGGGTGGGAATTAGATTAATATTAACATCTTTTGTGAATCAAAAGATGATCCTCACCTTAACTGCAAGTATCATGTACTGGTTTCTCTTGAAACAAGGAGGCGAAGAGAAAGGTTGGACAAGTTCAGACAGTGAAAACAGCAGCCAATCAGAGGTTGTTTCGAACTCGACGACCGATGACTCAGCCTCCGAGTCATCAGCAGACGAAAATGGTAACATAATCTGCCGCGAGCTGTGA

Coding sequence (CDS)

ATGAAGTTGAAAAGGGTGGGAATTAGATTAATATTAACATCTTTTGTGAATCAAAAGATGATCCTCACCTTAACTGCAAGTATCATGTACTGGTTTCTCTTGAAACAAGGAGGCGAAGAGAAAGGTTGGACAAGTTCAGACAGTGAAAACAGCAGCCAATCAGAGGTTGTTTCGAACTCGACGACCGATGACTCAGCCTCCGAGTCATCAGCAGACGAAAATGGTAACATAATCTGCCGCGAGCTGTGA

Homology

[Close]

BLAST of CmoCh17G012820 vs. TrEMBL
Match: A0A0A0K8J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372330 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIMYWFL KQGG++K   SSDSENSSQSE +SNSTTDDSASESSADENG
Sbjct: 266 VNQKMILTLTASIMYWFL-KQGGDDKASVSSDSENSSQSEAISNSTTDDSASESSADENG 325

Query: 76  NI 78
           N+
Sbjct: 326 NM 326

[Close]

BLAST of CmoCh17G012820 vs. TrEMBL
Match: A0A067ETZ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045775mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 16 VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
          VNQKMILTLTASIM+WF+ KQ  EEK    SDSEN SQSE +SNST DDSAS+SS +ENG
Sbjct: 27 VNQKMILTLTASIMHWFM-KQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENG 86

Query: 76 NI 78
          NI
Sbjct: 87 NI 87

[Close]

BLAST of CmoCh17G012820 vs. TrEMBL
Match: V4UAS7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100145182mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIM+WF+ KQ  EEK    SDSEN SQSE +SNST DDSAS+SS +ENG
Sbjct: 306 VNQKMILTLTASIMHWFM-KQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENG 365

Query: 76  NI 78
           NI
Sbjct: 366 NI 366

[Close]

BLAST of CmoCh17G012820 vs. TrEMBL
Match: D7TYL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00720 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-11
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 16 VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
          VNQKMILTLTASIMYWFL KQ  EE+   +SDSEN SQSE +SNST DD+ASESS +ENG
Sbjct: 27 VNQKMILTLTASIMYWFL-KQPVEERPSGASDSENGSQSETISNSTMDDTASESSIEENG 85

[Close]

BLAST of CmoCh17G012820 vs. TrEMBL
Match: A5BUK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022639 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-11
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIMYWFL KQ  EE+   +SDSEN SQSE +SNST DD+ASESS +ENG
Sbjct: 592 VNQKMILTLTASIMYWFL-KQPVEERPSGASDSENGSQSETISNSTMDDTASESSIEENG 650

[Close]

BLAST of CmoCh17G012820 vs. NCBI nr
Match: gi|449465292|ref|XP_004150362.1| (PREDICTED: fimbrin-2 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIMYWFL KQGG++K   SSDSENSSQSE +SNSTTDDSASESSADENG
Sbjct: 606 VNQKMILTLTASIMYWFL-KQGGDDKASVSSDSENSSQSEAISNSTTDDSASESSADENG 665

Query: 76  NI 78
           N+
Sbjct: 666 NM 666

[Close]

BLAST of CmoCh17G012820 vs. NCBI nr
Match: gi|700189454|gb|KGN44687.1| (hypothetical protein Csa_7G372330 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIMYWFL KQGG++K   SSDSENSSQSE +SNSTTDDSASESSADENG
Sbjct: 266 VNQKMILTLTASIMYWFL-KQGGDDKASVSSDSENSSQSEAISNSTTDDSASESSADENG 325

Query: 76  NI 78
           N+
Sbjct: 326 NM 326

[Close]

BLAST of CmoCh17G012820 vs. NCBI nr
Match: gi|659092806|ref|XP_008447228.1| (PREDICTED: fimbrin-like protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
           VNQKMILTLTASIMYWFL KQGG++K   SSDSENSSQSE +SNSTTDDSASESSADENG
Sbjct: 606 VNQKMILTLTASIMYWFL-KQGGDDKASVSSDSENSSQSEAISNSTTDDSASESSADENG 665

Query: 76  NI 78
           N+
Sbjct: 666 NM 666

[Close]

BLAST of CmoCh17G012820 vs. NCBI nr
Match: gi|659092804|ref|XP_008447227.1| (PREDICTED: fimbrin-like protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 16  VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADEN 75
           VNQKMILTLTASIMYWFL KQGG++K   SSDSENSSQSE +SNSTTDDSASESSADEN
Sbjct: 606 VNQKMILTLTASIMYWFL-KQGGDDKASVSSDSENSSQSEAISNSTTDDSASESSADEN 663

[Close]

BLAST of CmoCh17G012820 vs. NCBI nr
Match: gi|641839651|gb|KDO58578.1| (hypothetical protein CISIN_1g045775mg [Citrus sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 16 VNQKMILTLTASIMYWFLLKQGGEEKGWTSSDSENSSQSEVVSNSTTDDSASESSADENG 75
          VNQKMILTLTASIM+WF+ KQ  EEK    SDSEN SQSE +SNST DDSAS+SS +ENG
Sbjct: 27 VNQKMILTLTASIMHWFM-KQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENG 86

Query: 76 NI 78
          NI
Sbjct: 87 NI 87

The following BLAST results are available for this feature:

BLAST of CmoCh17G012820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8J0_CUCSA	1.2e-16	85.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372330 PE=4 SV=1	[more]
A0A067ETZ8_CITSI	2.0e-11	74.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045775mg PE=4 SV=1	[more]
V4UAS7_9ROSI	2.0e-11	74.19	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100145182mg PE...	[more]
D7TYL4_VITVI	7.6e-11	75.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00720 PE=4 SV=...	[more]
A5BUK7_VITVI	7.6e-11	75.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022639 PE=4 SV=1	[more]

BLAST of CmoCh17G012820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465292\|ref\|XP_004150362.1\|	1.7e-16	85.48	PREDICTED: fimbrin-2 [Cucumis sativus]	[more]
gi\|700189454\|gb\|KGN44687.1\|	1.7e-16	85.48	hypothetical protein Csa_7G372330 [Cucumis sativus]	[more]
gi\|659092806\|ref\|XP_008447228.1\|	1.7e-16	85.48	PREDICTED: fimbrin-like protein 2 isoform X2 [Cucumis melo]	[more]
gi\|659092804\|ref\|XP_008447227.1\|	5.6e-15	86.44	PREDICTED: fimbrin-like protein 2 isoform X1 [Cucumis melo]	[more]
gi\|641839651\|gb\|KDO58578.1\|	2.9e-11	74.19	hypothetical protein CISIN_1g045775mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012820.1	CmoCh17G012820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19961	FIMBRIN/PLASTIN	coord: 16..67 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012820	Silver-seed gourd	carcmoB0021
CmoCh17G012820	Silver-seed gourd	carcmoB0112
CmoCh17G012820	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012820	Watermelon (97103) v2	cmowmbB373
CmoCh17G012820	Wax gourd	cmowgoB0492
CmoCh17G012820	Cucurbita moschata (Rifu)	cmocmoB311
CmoCh17G012820	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012820	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012820	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012820	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012820	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012820	Melon (DHL92) v3.5.1	cmomeB321
CmoCh17G012820	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012820	Watermelon (97103) v1	cmowmB325
CmoCh17G012820	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012820	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012820	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012820	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012820	Melon (DHL92) v3.6.1	cmomedB363
CmoCh17G012820	Melon (DHL92) v3.6.1	cmomedB368