CmoCh17G012700 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G012700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNAD(P)H-quinone oxidoreductase chain 4, chloroplastic
LocationCmo_Chr17 : 9975197 .. 9976555 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGAGCAAGGTTAGAAATTTAGCTGCTTCCCCCACTTCCCACTCTACTGGTTGTATTCTCAAAACACCAGCTTTGGCAGACTATTAACAGGAAGTGAGATTCTTGTCATTGAAATATTAAATGGAACAAAAGAGAAGAAAAAAAACGTATTTTTTTTTTTAGTTTTCCTTTTCCATAAAACTGAAGTTGGAATTCTGTATGATAGTTTTGTTAGTGCTTGCAGATGCAAATTTGTGGGACTGCCCTCACCTGGCTGTTGAAGCAAATTTTGGGGCGTAAAGTGGGTGAGTATTGAGTATGATCTTAAATTGCTTCAACTTTTAAAAGTTTTGAAATTGAAACTTTCAAAAGTTTCAAAGTATCTTAGCATTTGTACGTTCGGGTAATTTGTTGTTGCTTTTTTTTTTTTAATTTTTTTATTTACTGATCTATTAGACTAAAATTGAACGTCTCGAGTCTTATTAGACATATTAGATCAAGTAATTAGCGATGTAGATCAAATAATTAGCAATTGTTACAGAATAAGTCATATTAATAGGAGTGTTATCATAATAAAACACTAAATCTTTTCTATATATTATATATTCTTTAAATTATTATGGACAATCTCTCGTACGTTAACCACATATTACTTTAAATTACTCTTATAAGAAAAATAATTATTAAATAATAAAAATAATATTATGTGTGTTTGACATAAATCTCAACAATAATATAGATCATTTTCATCATGATTTGGTTTCATTGAAGGGAGGTATATGGTGGGAAATTAATGAGTCCTTTTGAAGTTGTCTTGTTTGTGAGTTGCAAGCAATGTTTTGGTAAAGTCCCAATCACATAATAGATATATCCTTCCAAATTTATGGACTTTCCATAGGACCCATTTTACTGACGGGGTTTATCACCACTTTAGCTACTTTAGCGGCTTGGCCAGTTACTCGAGATTCCCGATTATTCCATTTTCTAATGTTAGCAATGTATAGTGGTCAAATAGGATCATTTTCTGCTCAAGACCTTTTACTATTTTTTATCATGTGGGATTTAGAATTAATTCCCGTTTATCTACCTCTATCGATATGGGGAGGAAAGAAACGGCTGTATTCAGCTACAAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG

mRNA sequence

ATGTACAGAGCAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG

Coding sequence (CDS)

ATGTACAGAGCAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_CUCSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEI+FYIGFLIAFAVKSPIIPLHTWL
Sbjct: 175 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEILFYIGFLIAFAVKSPIIPLHTWL 234

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 235 PDTHGEA 241

BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-30
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LL+GV+GIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWL
Sbjct: 175 SIFLLLGVLGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWL 234

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 235 PDTHGEA 241

BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-29
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+G+GLYGSNEPTLNFETS NQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWL
Sbjct: 175 SIFLLMGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWL 234

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 235 PDTHGEA 241

BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_HELAN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus GN=ndhD PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+G+GLYGSNEPTLNFETS NQSYP+ALEIIFYIGFLIAFAVK PI+PLHTWL
Sbjct: 175 SIFLLMGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFLIAFAVKLPILPLHTWL 234

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 235 PDTHGEA 241

BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_GOSBA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN=ndhD PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LL+GV+G+GLYGSNEPTLNFET ANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 175 SVFLLIGVLGLGLYGSNEPTLNFETLANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWL 234

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 235 PDTHGEA 241

BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A109X092_GYNPE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gynostemma pentaphyllum GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SVFLLMGVMGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IHR1_CUCPE (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. pepo GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IG84_CUCPE (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. ovifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IFT6_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IE07_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita argyrosperma GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. TAIR10
Match: ATCG01050.1 (ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-27
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LL+GV+GI LYGSNEPTLN E  AN+SYP+ LEI+FYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLIGVLGISLYGSNEPTLNLELLANKSYPVTLEILFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|1002166172|ref|YP_009236327.1| (NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 134.4 bits (337), Expect = 9.1e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SVFLLMGVMGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952954687|gb|ALO22046.1| (NdhD (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952954802|gb|ALO22159.1| (NdhD (plastid) [Cucurbita foetidissima])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952955569|gb|ALO22915.1| (NdhD (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952955433|gb|ALO22781.1| (NdhD (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 14  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 73
           S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL
Sbjct: 181 SIFLLMGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWL 240

Query: 74  PDTHGEA 81
           PDTHGEA
Sbjct: 241 PDTHGEA 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NU4C_CUCSA1.3e-3094.03NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD... [more]
NU4C_VITVI6.3e-3091.04NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD ... [more]
NU4C_PANGI1.1e-2989.55NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD P... [more]
NU4C_HELAN3.1e-2988.06NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus GN=nd... [more]
NU4C_GOSBA3.1e-2989.55NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN... [more]
Match NameE-valueIdentityDescription
A0A109X092_GYNPE6.3e-2995.52NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gynostemma pentaphyllum... [more]
A0A0S2IHR1_CUCPE8.3e-2995.52NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. pepo GN=ndhD PE=... [more]
A0A0S2IG84_CUCPE8.3e-2995.52NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. ovifera GN=ndhD ... [more]
A0A0S2IFT6_9ROSI8.3e-2995.52NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita okeechobeensis subsp. martin... [more]
A0A0S2IE07_9ROSI8.3e-2995.52NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita argyrosperma GN=ndhD PE=3 SV... [more]
Match NameE-valueIdentityDescription
ATCG01050.11.4e-2782.09ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein[more]
Match NameE-valueIdentityDescription
gi|1002166172|ref|YP_009236327.1|9.1e-2995.52NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Gynostemma pentaphyll... [more]
gi|952954687|gb|ALO22046.1|1.2e-2895.52NdhD (plastid) [Cucurbita ecuadorensis][more]
gi|952954802|gb|ALO22159.1|1.2e-2895.52NdhD (plastid) [Cucurbita foetidissima][more]
gi|952955569|gb|ALO22915.1|1.2e-2895.52NdhD (plastid) [Cucurbita pedatifolia][more]
gi|952955433|gb|ALO22781.1|1.2e-2895.52NdhD (plastid) [Cucurbita pepo subsp. pepo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001750ND/Mrp_mem
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012700.1CmoCh17G012700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 8..80
score: 1.
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 14..80
score: 4.9
NoneNo IPR availablePANTHERPTHR22773:SF92NAD(P)H-QUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLASTICcoord: 14..80
score: 4.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None