CmoCh17G012700 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACAGAGCAAGGTTAGAAATTTAGCTGCTTCCCCCACTTCCCACTCTACTGGTTGTATTCTCAAAACACCAGCTTTGGCAGACTATTAACAGGAAGTGAGATTCTTGTCATTGAAATATTAAATGGAACAAAAGAGAAGAAAAAAAACGTATTTTTTTTTTTAGTTTTCCTTTTCCATAAAACTGAAGTTGGAATTCTGTATGATAGTTTTGTTAGTGCTTGCAGATGCAAATTTGTGGGACTGCCCTCACCTGGCTGTTGAAGCAAATTTTGGGGCGTAAAGTGGGTGAGTATTGAGTATGATCTTAAATTGCTTCAACTTTTAAAAGTTTTGAAATTGAAACTTTCAAAAGTTTCAAAGTATCTTAGCATTTGTACGTTCGGGTAATTTGTTGTTGCTTTTTTTTTTTTAATTTTTTTATTTACTGATCTATTAGACTAAAATTGAACGTCTCGAGTCTTATTAGACATATTAGATCAAGTAATTAGCGATGTAGATCAAATAATTAGCAATTGTTACAGAATAAGTCATATTAATAGGAGTGTTATCATAATAAAACACTAAATCTTTTCTATATATTATATATTCTTTAAATTATTATGGACAATCTCTCGTACGTTAACCACATATTACTTTAAATTACTCTTATAAGAAAAATAATTATTAAATAATAAAAATAATATTATGTGTGTTTGACATAAATCTCAACAATAATATAGATCATTTTCATCATGATTTGGTTTCATTGAAGGGAGGTATATGGTGGGAAATTAATGAGTCCTTTTGAAGTTGTCTTGTTTGTGAGTTGCAAGCAATGTTTTGGTAAAGTCCCAATCACATAATAGATATATCCTTCCAAATTTATGGACTTTCCATAGGACCCATTTTACTGACGGGGTTTATCACCACTTTAGCTACTTTAGCGGCTTGGCCAGTTACTCGAGATTCCCGATTATTCCATTTTCTAATGTTAGCAATGTATAGTGGTCAAATAGGATCATTTTCTGCTCAAGACCTTTTACTATTTTTTATCATGTGGGATTTAGAATTAATTCCCGTTTATCTACCTCTATCGATATGGGGAGGAAAGAAACGGCTGTATTCAGCTACAAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG ATGTACAGAGCAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG ATGTACAGAGCAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACGTGTATGCTTCTAG
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_CUCSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD PE=2 SV=2) HSP 1 Score: 133.3 bits (334), Expect = 1.3e-30 Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 6.3e-30 Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 1.1e-29 Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_HELAN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus GN=ndhD PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29 Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1
BLAST of CmoCh17G012700 vs. Swiss-Prot
Match: NU4C_GOSBA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN=ndhD PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29 Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A109X092_GYNPE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gynostemma pentaphyllum GN=ndhD PE=3 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 6.3e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IHR1_CUCPE (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. pepo GN=ndhD PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IG84_CUCPE (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita pepo subsp. ovifera GN=ndhD PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IFT6_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhD PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TrEMBL
Match: A0A0S2IE07_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucurbita argyrosperma GN=ndhD PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. TAIR10
Match: ATCG01050.1 (ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein) HSP 1 Score: 119.0 bits (297), Expect = 1.4e-27 Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1
BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|1002166172|ref|YP_009236327.1| (NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Gynostemma pentaphyllum]) HSP 1 Score: 134.4 bits (337), Expect = 9.1e-29 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952954687|gb|ALO22046.1| (NdhD (plastid) [Cucurbita ecuadorensis]) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952954802|gb|ALO22159.1| (NdhD (plastid) [Cucurbita foetidissima]) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952955569|gb|ALO22915.1| (NdhD (plastid) [Cucurbita pedatifolia]) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
BLAST of CmoCh17G012700 vs. NCBI nr
Match: gi|952955433|gb|ALO22781.1| (NdhD (plastid) [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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