CmoCh17G012670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 9963297 .. 9964160 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGTAATTGCTAAAACTCCAAACTCATGACAGGAAGTACAGAAAGACGCCATGATTATCGGGGAATTCATGAATTTCAAGATTTCGGTGCTTGAATTGGGACCCAACCACCTTTGATTCTGTGTTTGATGAAATCGAAATCAATGTGTGCGCAATTCAAGGCACTGAGAAACTATAACACTGCAGCTCGTCTTGAAGGACGCTCCACCACCCTCCACTATTTCCTTGACGCTTTTGCTAGTCAAATTTAGGTCCAATTACACCCAATATTTTTTCAATAGGATAATTTAGGGCTTGAATGGAAAAATTACAATTTTTCCTTTCCTTCCGTAGTTGATCCACTCTTCAATTGGTTAGGGTTCACCTCTGACTCTGACTTAATTAAATTTATGAGACGATAAAATATGGCAAAATTCATAGCAAAGAATTGGTTCACGTAGAAATAGACATATTAGCTCTCGTAAAAGTACGCATAAAATATCAAAGGGCGTTATTCATGTTCAAGCAAATTTCAACAATACAATTGTGACTGTTACAGATGTACAGGGTCGGATAATTTCTTGATCCTCCACGGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTACCGCTCAAATCCGCGCAGGAAATGCTATTCGGGCTCTAGCAGATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAAAAAAAAAATTAAAAAAAAAATTAAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACTATATTAA

mRNA sequence

ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCGGATAATTTCTTGATCCTCCACGGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTACCGCTCAAATCCGCGCAGGAAATGCTATTCGGGCTCTAGCAGATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAAAAAAAAAATTAAAAAAAAAATTAAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACTATATTAA

Coding sequence (CDS)

ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCGGATAATTTCTTGATCCTCCACGGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTACCGCTCAAATCCGCGCAGGAAATGCTATTCGGGCTCTAGCAGATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAAAAAAAAAATTAAAAAAAAAATTAAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACTATATTAA
Homology
[Close]
BLAST of CmoCh17G012670 vs. TrEMBL
Match: U5FXH9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03990g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 20  SDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKS 79
           S + L+L  +LWIQ  K R TI  SN  +KCYS  S SRYAT++SHDKG WSRKRC +KS
Sbjct: 87  SSDLLVLRRHLWIQGHKKRGTICCSNCSKKCYSDRSGSRYATSKSHDKGYWSRKRCGIKS 146

Query: 80  YS 82
           YS
Sbjct: 147 YS 148

[Close]
BLAST of CmoCh17G012670 vs. TrEMBL
Match: A0A151R2A2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042161 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-09
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 22 NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS 81
          NFL+L  YLWIQ     D   RSN  RK YS S+RSR AT+RSHDK SWSRKRC +K YS
Sbjct: 15 NFLVLRWYLWIQGYTKGDAFCRSNCNRKYYSNSNRSRQATSRSHDKRSWSRKRCGIKGYS 74

Query: 82 DTDKKKIKKKIKKKGSK 99
             KK    K ++K  K
Sbjct: 75 ---KKWYTIKKQRKNYK 88

[Close]
BLAST of CmoCh17G012670 vs. NCBI nr
Match: gi|566188969|ref|XP_006378146.1| (hypothetical protein POPTR_0010s03990g [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 20  SDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKS 79
           S + L+L  +LWIQ  K R TI  SN  +KCYS  S SRYAT++SHDKG WSRKRC +KS
Sbjct: 87  SSDLLVLRRHLWIQGHKKRGTICCSNCSKKCYSDRSGSRYATSKSHDKGYWSRKRCGIKS 146

Query: 80  YS 82
           YS
Sbjct: 147 YS 148

[Close]
BLAST of CmoCh17G012670 vs. NCBI nr
Match: gi|1012324736|gb|KYP36697.1| (hypothetical protein KK1_042161, partial [Cajanus cajan])

HSP 1 Score: 68.9 bits (167), Expect = 5.9e-09
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 22 NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS 81
          NFL+L  YLWIQ     D   RSN  RK YS S+RSR AT+RSHDK SWSRKRC +K YS
Sbjct: 15 NFLVLRWYLWIQGYTKGDAFCRSNCNRKYYSNSNRSRQATSRSHDKRSWSRKRCGIKGYS 74

Query: 82 DTDKKKIKKKIKKKGSK 99
             KK    K ++K  K
Sbjct: 75 ---KKWYTIKKQRKNYK 88

The following BLAST results are available for this feature:
BLAST of CmoCh17G012670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012670 vs. TrEMBL
Match NameE-valueIdentityDescription
U5FXH9_POPTR4.4e-1161.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03990g PE=4 SV=1[more]
A0A151R2A2_CAJCA4.1e-0955.84Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042161 PE=4 SV=1[more]
BLAST of CmoCh17G012670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|566188969|ref|XP_006378146.1|6.3e-1161.29hypothetical protein POPTR_0010s03990g [Populus trichocarpa][more]
gi|1012324736|gb|KYP36697.1|5.9e-0955.84hypothetical protein KK1_042161, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012670.1CmoCh17G012670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012670Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012670Watermelon (97103) v2cmowmbB373
CmoCh17G012670Wax gourdcmowgoB0492
CmoCh17G012670Cucurbita moschata (Rifu)cmocmoB311
CmoCh17G012670Cucumber (Gy14) v1cgycmoB1076
CmoCh17G012670Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012670Cucurbita maxima (Rimu)cmacmoB888
CmoCh17G012670Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012670Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012670Melon (DHL92) v3.5.1cmomeB314
CmoCh17G012670Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012670Watermelon (97103) v1cmowmB325
CmoCh17G012670Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012670Cucurbita pepo (Zucchini)cmocpeB343
CmoCh17G012670Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G012670Cucumber (Gy14) v2cgybcmoB903
CmoCh17G012670Melon (DHL92) v3.6.1cmomedB360
CmoCh17G012670Silver-seed gourdcarcmoB0021
CmoCh17G012670Silver-seed gourdcarcmoB0112