CmoCh17G012460 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Vacuolar iron transporter (VIT) family protein
Location	Cmo_Chr17 : 9875874 .. 9881065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGTTAGGGGAAGATCCTACCGATCAACAGTTGAGTGAAGGTCATAAATATGAACAATTAGGGGAAGATAATGCTGAAGAACAATCAAATGAAGTCATTTACACTCATAATGGTGAACAAGAAGTCCTTTGTCAAGAAATTTTAGTTGCTTCAAGTCCACACGAACTCATTGTTACTGAACCGGAAATCAAAGAACAACAAAGTGCAACTTCAGTTAGAACCGAAATTGTGAAAAGTGTGCTGTATGGCGGTTTAACTGAACTGATAGCAAGCTTAGGCATTGTCACATCTTCCGCCAGCACCGGTGCTACCACTGGTAACTTTATTTTATTCCTAATCCACCACCGGCAAATATTATTCTTTTTGGATTTGAGGTTTTCACACTCTTATAAAAAATGATAGGAAGACGTTTCTACACCCTTATAAAAAAATGCTTCGTTCTCCTCTCCAACCTATATACGATCTCACAATCCACTCCTTTTAGACACTCGTTCCCTTCTCCAATCAATGTGGGACCCCCAATCCACCCCCCCTTCGAGGCCAGCATCCTTGCTGACACACCGCCTTGTGTCCACCCCCTTCGGGGTTCAGCCTCCTCACTAGCACATCGTCCGATGTCTACTTTGATTTCATTTGTAACAGGCTAAGCCCACCACTAACAAATATTGTCCTCTTTCGGCTTTCCCTTTCGGACTTCCCCTCAAAGTTTTAAAATGCGTCTGCTAGAGAGAAGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCTTCACAACCGACGTGGGATCTCACATTATCTCTTCTATAGTGCTTAAGAACAATCAAATCAAGAATCATTGATACGCATAATATTTTGCATGATGCAGGAAAAACGGTAGCTCTTTCACTATCAAACTTGATTATTGGACTGTTTGTGATGAGCTATAGAGTGAGTAATTACATTCTCCTCTTCTTCCAATACCAATACCTATTTCCATAGTTCTGAATTCAATGAGCAATTTCCAGATATCAAAACATTGGATAAACGGCCAGGAAAGTGGACCTGATGAACAAAGAGAGGAAGAAGTGGATAGATATGAGCAAGTCTTCGGAGATAGAAAAAACCATCGCCTCCATTTGACAGTGGCTATCCTATCATTCCTGATATTTGGGTTGGTGCCCCCTCTCCTTTAATGGCTTCACGTTCCGTAAGCCAGAGGACAAATTTCTCAAGATTCCAACAGTCACAATAGTCTCTGTTCTATGTATTGGATTGCTTGGCGTGGGTAAAGCTTACATTGAGAAGCCAGAAAATTGCCTTGTCTATGTTCATATCATTGGGGGATGCATAGCTGATGCAATTGGGACGTCGGCAGTGACAACTTTTGGAGGTGAGCTGATTCAAAACTATATTGATCAAGCTGGTTGGTTTGATTTTGAGCCGAACAAAGTTCCAACCTTGCTCCTACCAGGCATGGATTTTCGGTATCAGACATGGAGATCCGTTTGAACTTTTTGTTCCTTAATCTTATAATGGTGTGTTAAAACTGAATATGTATGCATATTTCATTCACTTTTGAACTTTGGACTGAATAATTGAAGCTACTAATCTTCATTGCTTGGGAGTTTCGGATTTCTTTAGTTTTATGATGGCAAAGCAATATAAAGGAACGTACTCAATTGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATGTGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCGATGCTTTGAAGTATATCCATTTAGAAACATAGTTTTTAAAGCATAGACTTTTCAATATGCTCGCATTGCTCGAGTTCATAGATTAGGCCACATCATAGTCTATATTGGCCTAAGTCCACTACTAATAGATATTGTTCGCTTCGGCTCGTTACGCATCGCCGTCAGTCTCACGGTTTAAAACGCGAGTTTATTAGAGAGAGGTTTCATGCGAATCTATTAGGGAGTTATTCTCCTCTCCAATACAATCCACCCCCTTGGGGGTCCAAGGTACAACTATGTACCTCTACCGCTCGTGACAGGCTCACTACAAGAAGCTAATTGGCAAACTTCGCAGTAGTCCATTGGCAAACTTCACAGTAGTCCCCACACGGTACAATCATAAAGCATAAAATATCATAAGCCAGTTCTATGATTATTCGAACCCCTGACAATTGAGTCAGGTTCACGATTAGAGGTTAGTTGGCGAACCCCTAATCGTCCCCGTATAACCGCATACATCGTGAACATATGACATAGAGACATAGCATAGTGATCTAAACATGGATACCTAGTCATGAATCTCACTTCATAAGATAGTGCGTATGCATTTTAGTTATCATACATAATCACATTCAACATGTGTCATCTCAACTCATTCTATGCTCAAACATATATAATCGGGTTCCCATAACATGTTTTATATGAATGCTCTCAATTTCAGTCATATCATAACTCAACAGTTCGTTCTTCGATAAACGTGCATCATAACGTTTAATGTACTCTTACATACATCAAATCAAACCAACTCATTTCATGCTCAAATTTCTATGACATACTTCTCATATCATACTTTCATATATACTATGAGCATATCTAAATCCAAGGTACCACTTACTTGGAAAGGAAAGCGGGACACTTTTTGTTCGAGTTGGTGTCCTTAGTAGATTCCAAAAATTGCCAGAACTCCTCCAGTAGTTCCAGCAATGACATGCAAAGCTGAATAAGTCATCCGCCAGTCCCCAGCAATCACCGATGAAAATCTCCTTCACAGCACCACCAGTAATAAACAATGCTTTAGCACTCTTTTTATCCCGTAGTTGACAGTTCTGCAAATGCAACCGCTCAAGAACAGGACAAGGACTCAGATTTCAGAATTTGTAAATTCTCACAAGCAGCAAATTCCTCTCAGCAGATTATCATTACACTAGTGCAATTCAAGTTCTTGCAAGGTCTCACATTCCTCGGCCACACTCAACAATCCCAACTCACTTCCACCAATAAAAGCTAATTTGCGCAAATTTGGGCAGCCATCGGCCAATGCTTTCAGCCCTCTATCAATCTCCATATTGTCAATAATATTTTCCTCACCAACACCCGGAATAGGCAAAAATCAGGAATCAACATGCATTGAATGAATGCTATTACTCAACAAGATACCAGAATTTCTAAAACACATCAAAGATCCAGAGATTAAATCCACACGGTTAAGATTTGGAAACCTCAAAATCAACCTACCCGACAAGAGAAAATTCAAATCCATTACCCTGAGCGACCGTACAATACGACCCTACAGATTCAGCCACCGTTTGCAGACAAGAAAGTTGGAGTTCCGCTGAGAATCCGGTAATTTCGTGAGGATCCTAAGAAGAAGCTCGTCCGAAAGAAGCAGCGTACAGTCGATTTTGCAGAAATTAGCGATTAAGTGGGGGTTGGTTTTGGAGTTGGATGTGGGAATATGAGAGTCTTTAACCGAGGATTGAAGTTGCATAGCAACAATAACACTCTCAAGCGATTCGGTGTCCTGCCACACACATCAGACCAACGCAGTGTCCTCTTCTTCCCCGGCGAGTTAGGGTTCGTTTGAGGGCTCGGAACCGAGGAAATGGAGCTTCGTCTTTCAGCTTCAAACAATACCGATTGTGCTCGTCCATGTGCATAACCCATGGCGGTAATGGCGGTAAGACTCCTCCCCAATCACCGCTACGTCTCAGCTTTCCAGAATACTCTCTTCTCTGTGTCTATCTTCTTCAACATACCACATTGATCTGCCAATAACAGTTCGAAATCTGCAACTTGGGTTCTTCAAAATCTCTTTAGACAGTGGATATTTGGGCTGCTCTCTGCTCTCTGCTCTCTGCTCACTGCTCACTGCTCACTGTATCCGTCGTCAGCCGTCAGCGTACGGTGGGGCTGCTAAAAGCATTTTTCTTTTATTTTTTTTATAATTTTTTTTATTTTTTTGGAGCATTGATATTACAAGCATATTGACATCGTGGGACTCTATTTATGATTTGTAATGGCCTAAATCCACTCTTAATAGATATTCTCTGATACTCTCTGCGGTCTGTTATACATAGTAGCTAACCTTACAGTTTTAAAATATATCTATTATTGTTAAGTTTCTACACCCTTTTAAAAAATATTTAGTTCTCCTGTCTAACCACACTGCCAGATCTCACATAACCATATAAATAATAGGAATTTTTTATGTAAGGTCATCTAATATATATGATCAATTTAGATAACTTTCAAGTTTTTATGATTAGGTCATTTAAAAGAAAAGTAATTTTTTTTGTTTAAACTTTCTTAATTATACTTGCATATTCTCGAGATCCCTCTATTTCATAAATAGTCATAATTCATTCATGTGTATTTCTTCCCTTAGAAGTCGTAA

mRNA sequence

ATGAACCGAAAAACGGTAGCTCTTTCACTATCAAACTTGATTATTGGACTGTTTGTGATGAGCTATAGAATATCAAAACATTGGATAAACGGCCAGGAAAGTGGACCTGATGAACAAAGAGAGGAAGAAGTGGATAGATATGAGCAAGTCTTCGGAGATAGAAAAAACCATCGCCTCCATTTGACAGTGGCTATCCTATCATTCCTGATATTTGGGCATGGATTTTCGGTATCAGACATGGAGATCCGTTTGAACTTTTTGTTCCTTAATCTTATAATGTTGACAGTTCTGCAAATGCAACCGCTCAAGAACAGGACAAGGACTCAGATTTCAGAATTTATTCAGCCACCGTTTGCAGACAAGAAAGTTGGAGTTCCGCTGAGAATCCGTTCGAAATCTGCAACTTGGGTTCTTCAAAATCTCTTTAGACAGTGGATATTTGGGCTGCTCTCTGCTCTCTGCTCTCTGCTCACTGCTCACTGCTCACTGTATCCGTCGTCAGCCGTCAGCGTACGGTCATTTAAAAGAAAAAAGTCGTAA

Coding sequence (CDS)

ATGAACCGAAAAACGGTAGCTCTTTCACTATCAAACTTGATTATTGGACTGTTTGTGATGAGCTATAGAATATCAAAACATTGGATAAACGGCCAGGAAAGTGGACCTGATGAACAAAGAGAGGAAGAAGTGGATAGATATGAGCAAGTCTTCGGAGATAGAAAAAACCATCGCCTCCATTTGACAGTGGCTATCCTATCATTCCTGATATTTGGGCATGGATTTTCGGTATCAGACATGGAGATCCGTTTGAACTTTTTGTTCCTTAATCTTATAATGTTGACAGTTCTGCAAATGCAACCGCTCAAGAACAGGACAAGGACTCAGATTTCAGAATTTATTCAGCCACCGTTTGCAGACAAGAAAGTTGGAGTTCCGCTGAGAATCCGTTCGAAATCTGCAACTTGGGTTCTTCAAAATCTCTTTAGACAGTGGATATTTGGGCTGCTCTCTGCTCTCTGCTCTCTGCTCACTGCTCACTGCTCACTGTATCCGTCGTCAGCCGTCAGCGTACGGTCATTTAAAAGAAAAAAGTCGTAA

Homology

[Close]

BLAST of CmoCh17G012460 vs. TrEMBL
Match: B9MUG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01010g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 6   VALSLSNLIIGLFVMSYRISKHWINGQESGPDEQREEEVDRYEQVFGDRKNHRLHLTVAI 65
           ++LS++NLI G+F++++ +S    + Q  G   Q  E+VDRY+Q+ G R+N  LH T+A+
Sbjct: 338 ISLSMANLIGGIFIIAHTLSD-LKSEQPRGASSQTNEQVDRYQQLLGRRENFLLHATIAL 397

Query: 66  LSFLIFG 73
           LSFL+FG
Sbjct: 398 LSFLVFG 403

[Close]

BLAST of CmoCh17G012460 vs. TrEMBL
Match: B9T3C2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1750150 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-06
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 1


Query: 5   TVALSLSNLIIGLFVMSYRISKHWINGQESGPDEQREEEVDRYEQVFGDRKNHRLHLTVA 64
           T+ L+L+NL+ GLF+M + + +   N Q      Q  E VDRY+++ G R+N  LH TVA
Sbjct: 406 TMVLALANLVGGLFIMGHNL-RELKNEQPESNSNQTNEPVDRYQELLGKRQNFFLHATVA 465

Query: 65  ILSFLIFG------HGFSV---SDMEIRLNFL-FLNLIMLTVLQM------QPLKNRTRT 109
           ILSFL+FG      +GFS     +M+ +L  +   +L+ +T+L +      +P KN   T
Sbjct: 466 ILSFLVFGLVPPVVYGFSFRKSDNMDYKLAAVAAASLLCITILAICKAYVRRPPKNYIET 524

[Close]

BLAST of CmoCh17G012460 vs. TrEMBL
Match: B9RPK0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378760 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.4e-06
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1


Query: 6   VALSLSNLIIGLFVMSYRISKHWINGQESGPDEQREEEVDRYEQVFGDRKNHRLHLTVAI 65
           +AL L+NLI GLF++ + ++   +    S    +  E+ DRY+   G R+N  LH TVAI
Sbjct: 657 LALGLANLIGGLFIIGHNLND--LKNNHSAGSSRTNEQEDRYQVTLGRRENFSLHATVAI 716

Query: 66  LSFLIFG------HGFSV---SDMEIRLNFL-FLNLIMLTVLQMQPLKNRTRTQISEFIQ 125
           +SFLIFG      +GFS     D +++L  +  ++L+ + +L +   K   + Q   +I 
Sbjct: 717 ISFLIFGLVPPVIYGFSFYKSDDKDLKLAVVGSVSLVCIILLAIG--KAHVQRQPKSYIS 776

Query: 126 PPFADKKVGVPLRIRSKSATWVLQNLFRQWI 147
             F    +GV     +  A++++ NL R  +
Sbjct: 777 TIFYFVSIGV----MASGASYIVGNLIRHMV 799

[Close]

BLAST of CmoCh17G012460 vs. NCBI nr
Match: gi|566146475|ref|XP_006368252.1| (hypothetical protein POPTR_0001s01010g [Populus trichocarpa])

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 6   VALSLSNLIIGLFVMSYRISKHWINGQESGPDEQREEEVDRYEQVFGDRKNHRLHLTVAI 65
           ++LS++NLI G+F++++ +S    + Q  G   Q  E+VDRY+Q+ G R+N  LH T+A+
Sbjct: 338 ISLSMANLIGGIFIIAHTLSD-LKSEQPRGASSQTNEQVDRYQQLLGRRENFLLHATIAL 397

Query: 66  LSFLIFG 73
           LSFL+FG
Sbjct: 398 LSFLVFG 403

The following BLAST results are available for this feature:

BLAST of CmoCh17G012460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012460 vs. TrEMBL


Match Name	E-value	Identity	Description
B9MUG0_POPTR	2.5e-06	44.78	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01010g PE=4 SV=1	[more]
B9T3C2_RICCO	7.2e-06	36.67	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1750150 PE=4 SV=1	[more]
B9RPK0_RICCO	9.4e-06	30.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378760 PE=4 SV=1	[more]

BLAST of CmoCh17G012460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|566146475\|ref\|XP_006368252.1\|	3.5e-06	44.78	hypothetical protein POPTR_0001s01010g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012460.1	CmoCh17G012460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012460	Lsi02G021050	Bottle gourd (USVL1VR-Ls)	cmolsiB334

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012460	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012460	Silver-seed gourd	carcmoB0021
CmoCh17G012460	Silver-seed gourd	carcmoB0112
CmoCh17G012460	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012460	Watermelon (97103) v2	cmowmbB373
CmoCh17G012460	Wax gourd	cmowgoB0492
CmoCh17G012460	Cucurbita moschata (Rifu)	cmocmoB311
CmoCh17G012460	Cucumber (Gy14) v1	cgycmoB0134
CmoCh17G012460	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012460	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012460	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012460	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012460	Melon (DHL92) v3.5.1	cmomeB314
CmoCh17G012460	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012460	Watermelon (97103) v1	cmowmB325
CmoCh17G012460	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012460	Cucurbita pepo (Zucchini)	cmocpeB343
CmoCh17G012460	Cucumber (Gy14) v2	cgybcmoB903