CmoCh17G012260 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 9740548 .. 9742123 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGTTGTTTTGGGTTAGGGTTTGTTTTGGATTTGGGGATCTGATTATTTGGATGTGATTTGGGCCTTTTTGCTTTTAGTTTCTGATTTTGTGTAATTGTTCATGAGGATGGTAATTAAACTGGAATATGATCACAATTTAAGGTATCAGAATGAGAATCTATATCGGCTAATTTTCTTTATGCTGCCTGAAATTCAGACTTCGTTTTGGTTTCACTTATAATTTCGTAGCATGGGTAGAGGCTTTGAACTTGGTTTCTTTCTTATGCAACTTTGTCATTCTTAGGATTTGGGTTGGTGGCCTAGCATATGTACACGATTCTATTTCATCTTTTGCTTATGTCTTCTTGAACTTTGATGGGAAAGGGGGTTTAAGGATTACTTGGAGGGAAAATCTGATGGTTGATGTTAATATGGTCGCCTCCTTTTCTTTTTTATCTTTGTGCAGACAACTCTCATCTGGCTTTTTGTTGCTCTTGCATATCTTTCATGGCTCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTGACTCTTTTTTTCCCGTGTAATGGGGATGTCAAGGGGGGTTGCCTTTGGAATCCGAAGGATGTCGTTAAGAATTTTCCTTTGAGGATAGTGATATTGTCTGTTTTCACATATGCTTAACTTTTTGGTGAGGGAAGTTGTTTTTTGTTTTGCACGTTTTCTTCTTCCATTGTTGCTGGTTTTGGGTTTGTTGTTTTTAACACTTCGTTGGCAGGGTTTGTATTAGAAATAAAATTGACCAGGATTTATGTGTTTGTTTGATTTGAATTTTCAAATTTAGCCCTAGATATGTTTTCTTAATGGACATGCCAATAGTTGTTGAATACATTTTTATTTTGTAGTTGCCTTTTCCTTTCAAAATTGAGATCTTGTATTTATAACCATCAAATTTCTTTTACGCTGCATAAATGCAGGTCAAGGACTTGTACAGACCTTGGCGTCTTGGAGAAGTTGCTAATAGTTTTAGTCAAGGGTGTAGTCCACCAATTACTCCTACAGTTACAGTTCTTTGCTTTCAATTAGTAGACCTGTGA

mRNA sequence

ATGGATTGGTTGTTTTGGGTTAGGGTTTGTTTTGGATTTGGGGATCTGATTATTTGGATACTTCGTTTTGGTTTCACTTATAATTTCGTAGCATGGGTAGAGGCTTTGAACTTGGTTTCTTTCTTATGCAACTTTGTCATTCTTAGGATTTGGGTTGGTGGCCTAGCATATGTACACGATTCTATTTCATCTTTTGCTTATGTCTTCTTGAACTTTGATGGGAAAGGGGGTTTAAGGATTACTTGGAGGGAAAATCTGATGGTTGATGTTAATATGGTCAAGGACTTGTACAGACCTTGGCGTCTTGGAGAAGTTGCTAATAGTTTTAGTCAAGGGTGTAGTCCACCAATTACTCCTACAGTTACAGTTCTTTGCTTTCAATTAGTAGACCTGTGA

Coding sequence (CDS)

ATGGATTGGTTGTTTTGGGTTAGGGTTTGTTTTGGATTTGGGGATCTGATTATTTGGATACTTCGTTTTGGTTTCACTTATAATTTCGTAGCATGGGTAGAGGCTTTGAACTTGGTTTCTTTCTTATGCAACTTTGTCATTCTTAGGATTTGGGTTGGTGGCCTAGCATATGTACACGATTCTATTTCATCTTTTGCTTATGTCTTCTTGAACTTTGATGGGAAAGGGGGTTTAAGGATTACTTGGAGGGAAAATCTGATGGTTGATGTTAATATGGTCAAGGACTTGTACAGACCTTGGCGTCTTGGAGAAGTTGCTAATAGTTTTAGTCAAGGGTGTAGTCCACCAATTACTCCTACAGTTACAGTTCTTTGCTTTCAATTAGTAGACCTGTGA
Homology
[Close]
BLAST of CmoCh17G012260 vs. TrEMBL
Match: A0A0A0K8A9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337090 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 92  MVKDLYRPWRLGEVANSFSQGCSPPITPTVTVLCFQLVDL 132
           +VKDLYRPWRLGEVAN+FSQGC PPIT TVTVLCF+ VDL
Sbjct: 25  LVKDLYRPWRLGEVANNFSQGCIPPITTTVTVLCFEFVDL 64

[Close]
BLAST of CmoCh17G012260 vs. NCBI nr
Match: gi|700189349|gb|KGN44582.1| (hypothetical protein Csa_7G337090 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 92  MVKDLYRPWRLGEVANSFSQGCSPPITPTVTVLCFQLVDL 132
           +VKDLYRPWRLGEVAN+FSQGC PPIT TVTVLCF+ VDL
Sbjct: 25  LVKDLYRPWRLGEVANNFSQGCIPPITTTVTVLCFEFVDL 64

The following BLAST results are available for this feature:
BLAST of CmoCh17G012260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8A9_CUCSA6.4e-1285.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337090 PE=4 SV=1[more]
BLAST of CmoCh17G012260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189349|gb|KGN44582.1|9.2e-1285.00hypothetical protein Csa_7G337090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012260.1CmoCh17G012260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G012260Csa7G337090Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012260CSPI07G14080Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012260CsGy7G012700Cucumber (Gy14) v2cgybcmoB903
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012260Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012260Cucurbita pepo (Zucchini)cmocpeB348
CmoCh17G012260Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G012260Melon (DHL92) v3.6.1cmomedB360
CmoCh17G012260Melon (DHL92) v3.6.1cmomedB369
CmoCh17G012260Silver-seed gourdcarcmoB0115
CmoCh17G012260Silver-seed gourdcarcmoB0576
CmoCh17G012260Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012260Watermelon (97103) v2cmowmbB373
CmoCh17G012260Wax gourdcmowgoB0489
CmoCh17G012260Wax gourdcmowgoB0492
CmoCh17G012260Cucurbita moschata (Rifu)cmocmoB316
CmoCh17G012260Cucumber (Gy14) v1cgycmoB0134
CmoCh17G012260Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012260Cucurbita maxima (Rimu)cmacmoB892
CmoCh17G012260Melon (DHL92) v3.5.1cmomeB322
CmoCh17G012260Melon (DHL92) v3.5.1cmomeB314
CmoCh17G012260Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012260Watermelon (97103) v1cmowmB325