CmoCh17G012130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr17 : 9700827 .. 9701264 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

mRNA sequence

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Coding sequence (CDS)

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Homology

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BLAST of CmoCh17G012130 vs. TrEMBL
Match: A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 94/153 (61.44%), Postives = 100/153 (65.36%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLL--GGVGGVSG-----LPFGGLGGGL 60
           M KLFMALLLAL+ATHA+ARP P   TF+DQKN L  GGVGG SG     LPFGGLGG +
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGV 120
           G  G  GGLGG     GLG     GGLG     GG G  GG+GGLGGPG     GG GG+
Sbjct: 61  GGGGLGGGLGG-----GLG-----GGLG-----GGTGIGGGLGGLGGPG-----GGFGGI 120

Query: 121 GG-LGGTGGGLGGGGSGGTGGVGVGGGSGGPYP 146
           GG  GG GGGLGGG  GG GG GVGG SG  YP
Sbjct: 121 GGTTGGLGGGLGGGLGGGLGG-GVGGASGVTYP 132

[Close]

BLAST of CmoCh17G012130 vs. TrEMBL
Match: A0A0D2R923_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224800 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 88/159 (55.35%), Postives = 102/159 (64.15%), Query Frame = 1


Query: 6   MALLLALMATHAVARPAPT--------------HATFNDQKNLL--GGVGGVSGL----- 65
           + +LLAL+  HA AR  PT               A+  DQKN L  GG GG +G+     
Sbjct: 8   LLVLLALVVVHASARNVPTTTTTMAADAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG  GG+GGLGG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGTGGVGGLGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G+ GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GVDGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

[Close]

BLAST of CmoCh17G012130 vs. TrEMBL
Match: A0N070_GOSHI (Glycine-rich protein OS=Gossypium hirsutum GN=GRP3 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 88/159 (55.35%), Postives = 100/159 (62.89%), Query Frame = 1


Query: 6   MALLLALMATHAVARPAPTHAT--------------FNDQKNLL--GGVGGVSGL----- 65
           + +LLAL+  HA AR  PT  T                DQKN L  GG GG +G+     
Sbjct: 8   LLVLLALVVVHASARNVPTKTTTMAANAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG PGG+GG GG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGPGGVGGFGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G  GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GADGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

[Close]

BLAST of CmoCh17G012130 vs. TrEMBL
Match: A5AU90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 90/175 (51.43%), Postives = 105/175 (60.00%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPTH----------------ATFNDQKNLL--GGVGGVS 60
           M   ++ L+LAL   HA AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWWVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGGLGG--GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG+GG  GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGVGG--LGGTGGGLGG-GGSGGTGGVGVGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG    G GGG+GG GG GG  G GVGGG+GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGG 175

[Close]

BLAST of CmoCh17G012130 vs. TrEMBL
Match: F6HS53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-09
Identity = 90/175 (51.43%), Postives = 104/175 (59.43%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPTH----------------ATFNDQKNLL--GGVGGVS 60
           M    + L+LAL   HA AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWCVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGGLGG--GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG+GG  GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGVGG--LGGTGGGLGG-GGSGGTGGVGVGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG    G GGG+GG GG GG  G GVGGG+GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGG 175

[Close]

BLAST of CmoCh17G012130 vs. TAIR10
Match: AT4G29020.1 (AT4G29020.1 glycine-rich protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.0e-07
Identity = 69/145 (47.59%), Postives = 85/145 (58.62%), Query Frame = 1


Query: 9   LLALMATHAVA--RPAPTH---ATFNDQKNLL-------------------------GGV 68
           L+ALM + AV   RPAPT    A  +DQKN +                         GGV
Sbjct: 10  LVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGGV 69

Query: 69  GGVSG-LPFGGLGGGLG-FPGGIGGLGGPGGIGG-LGFPGGIGGLGF-PG---GIGGLGF 117
           GGV+G LP GG+GGG+G   GG+GGLGG GG+GG  G   G+GG+G  PG   GIGGLG 
Sbjct: 70  GGVAGVLPVGGVGGGIGGLGGGVGGLGGLGGLGGGSGLGHGVGGIGGDPGIGSGIGGLGG 129

[Close]

BLAST of CmoCh17G012130 vs. NCBI nr
Match: gi|778730344|ref|XP_011659762.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 8.6e-11
Identity = 94/153 (61.44%), Postives = 100/153 (65.36%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLL--GGVGGVSG-----LPFGGLGGGL 60
           M KLFMALLLAL+ATHA+ARP P   TF+DQKN L  GGVGG SG     LPFGGLGG +
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGV 120
           G  G  GGLGG     GLG     GGLG     GG G  GG+GGLGGPG     GG GG+
Sbjct: 61  GGGGLGGGLGG-----GLG-----GGLG-----GGTGIGGGLGGLGGPG-----GGFGGI 120

Query: 121 GG-LGGTGGGLGGGGSGGTGGVGVGGGSGGPYP 146
           GG  GG GGGLGGG  GG GG GVGG SG  YP
Sbjct: 121 GGTTGGLGGGLGGGLGGGLGG-GVGGASGVTYP 132

[Close]

BLAST of CmoCh17G012130 vs. NCBI nr
Match: gi|645259790|ref|XP_008235531.1| (PREDICTED: glycine-rich cell wall structural protein [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 95/166 (57.23%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPT--HATFNDQKNLLGGVGGVSG-----LPFGG----- 60
           M + F+ L+LAL+  H  AR  PT   A F DQKN LGGVGG SG     LPF G     
Sbjct: 1   MARWFIVLVLALVVAHTTARNVPTANDAGFKDQKNFLGGVGGFSGIGSNGLPFAGAGAGV 60

Query: 61  ---LGGGLGFPGGIGGL----GGPGGIGGLGFPGGIGGL-GFPGGIGGLGFPGGIGGLGG 120
              LGGGLG   GIGG+    GG GGIG LG  GG+GGL G  GG GGL   GG+GGLG 
Sbjct: 61  GGNLGGGLGGGAGIGGVAGLGGGTGGIGDLGGAGGLGGLGGLGGGTGGL---GGLGGLG- 120

Query: 121 PGGIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSGG-PYP 146
            GG GGLGG GGVGG GG GGG+GGG  G     GVGGGSG  PYP
Sbjct: 121 -GGTGGLGGLGGVGGAGGIGGGVGGGVGG-----GVGGGSGVLPYP 156

[Close]

BLAST of CmoCh17G012130 vs. NCBI nr
Match: gi|823152977|ref|XP_012476322.1| (PREDICTED: acanthoscurrin-2-like [Gossypium raimondii])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 88/159 (55.35%), Postives = 102/159 (64.15%), Query Frame = 1


Query: 6   MALLLALMATHAVARPAPT--------------HATFNDQKNLL--GGVGGVSGL----- 65
           + +LLAL+  HA AR  PT               A+  DQKN L  GG GG +G+     
Sbjct: 8   LLVLLALVVVHASARNVPTTTTTMAADAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG  GG+GGLGG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGTGGVGGLGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G+ GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GVDGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

[Close]

BLAST of CmoCh17G012130 vs. NCBI nr
Match: gi|117650697|gb|ABK54298.1| (glycine-rich protein [Gossypium hirsutum])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 88/159 (55.35%), Postives = 100/159 (62.89%), Query Frame = 1


Query: 6   MALLLALMATHAVARPAPTHAT--------------FNDQKNLL--GGVGGVSGL----- 65
           + +LLAL+  HA AR  PT  T                DQKN L  GG GG +G+     
Sbjct: 8   LLVLLALVVVHASARNVPTKTTTMAANAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG PGG+GG GG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGPGGVGGFGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G  GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GADGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

[Close]

BLAST of CmoCh17G012130 vs. NCBI nr
Match: gi|147766421|emb|CAN73804.1| (hypothetical protein VITISV_031043 [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09
Identity = 90/175 (51.43%), Postives = 105/175 (60.00%), Query Frame = 1


Query: 1   MGKLFMALLLALMATHAVARPAPTH----------------ATFNDQKNLL--GGVGGVS 60
           M   ++ L+LAL   HA AR  P                  A   D+KN +  GGVGG +
Sbjct: 1   MASWWVMLILALAVVHATARKVPNDQAVLDAHVPKVGTPKGAAVGDKKNFITYGGVGGFA 60

Query: 61  G----------LPFGGLGG--GLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLG 120
           G          LP GG+GG  GLG  GG GGLGG GG+GGLG  GG+GGLG  GG+GGLG
Sbjct: 61  GVGGYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGGAGGVGGLGGAGGVGGLG 120

Query: 121 FPGGIGGLGGPGGIGGLGGPGGVGG--LGGTGGGLGG-GGSGGTGGVGVGGGSGG 143
             GG+GGLGG GG+GGLGG GG+GG    G GGG+GG GG GG  G GVGGG+GG
Sbjct: 121 GAGGLGGLGGAGGLGGLGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGGGAGG 175

The following BLAST results are available for this feature:

BLAST of CmoCh17G012130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U1_CUCSA	6.0e-11	61.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1	[more]
A0A0D2R923_GOSRA	2.5e-09	55.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224800 PE=4 SV=1	[more]
A0N070_GOSHI	2.5e-09	55.35	Glycine-rich protein OS=Gossypium hirsutum GN=GRP3 PE=2 SV=1	[more]
A5AU90_VITVI	3.3e-09	51.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1	[more]
F6HS53_VITVI	7.4e-09	51.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=...	[more]

BLAST of CmoCh17G012130 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29020.1	8.0e-07	47.59	glycine-rich protein	[more]

BLAST of CmoCh17G012130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730344\|ref\|XP_011659762.1\|	8.6e-11	61.44	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus]	[more]
gi\|645259790\|ref\|XP_008235531.1\|	2.8e-09	57.23	PREDICTED: glycine-rich cell wall structural protein [Prunus mume]	[more]
gi\|823152977\|ref\|XP_012476322.1\|	3.6e-09	55.35	PREDICTED: acanthoscurrin-2-like [Gossypium raimondii]	[more]
gi\|117650697\|gb\|ABK54298.1\|	3.6e-09	55.35	glycine-rich protein [Gossypium hirsutum]	[more]
gi\|147766421\|emb\|CAN73804.1\|	4.7e-09	51.43	hypothetical protein VITISV_031043 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012130.1	CmoCh17G012130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012130	CsaV3_7G025650	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012130	Carg25548	Silver-seed gourd	carcmoB0576

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012130	Cucumber (Gy14) v1	cgycmoB0134
CmoCh17G012130	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012130	Cucurbita maxima (Rimu)	cmacmoB892
CmoCh17G012130	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012130	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012130	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012130	Watermelon (97103) v1	cmowmB325
CmoCh17G012130	Watermelon (97103) v1	cmowmB339
CmoCh17G012130	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012130	Cucurbita pepo (Zucchini)	cmocpeB348
CmoCh17G012130	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012130	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012130	Silver-seed gourd	carcmoB0115
CmoCh17G012130	Watermelon (97103) v2	cmowmbB373
CmoCh17G012130	Wax gourd	cmowgoB0489
CmoCh17G012130	Wax gourd	cmowgoB0492
CmoCh17G012130	Cucurbita moschata (Rifu)	cmocmoB316