CmoCh17G012100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant self-incompatibility protein S1 family
Location	Cmo_Chr17 : 9694824 .. 9695493 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGGAATGTGGCTGCATTGTTTCTCGTGATGGTAGGTTTGGTCGGGGCTCAGCTTGAAGTTGAGTCTGAGAAGATCAATGTAGAGCCTCCGCGAATATCCAGTTATAACATTCATTTGGTTAACGATCTACAAGTCCTTGGTATAACGGTGCACTGCAAGTCAAAGGATGATGATTTGGGAGTTCATAATTTGCCTCATCGGGGAGATGATTACCATTTTAGTTTTAAGATTAATGTTTGGCAATCAACCCTCTTTTGGTGCAGAGTGGAAAAGCAGAATGCATACATCTCTTTCGAATGCTTTTGGACAGAAATACACCACAGATGGCTTCGTAATAGATGCCAAGATGGAGATGTAGGAACTTGTACCTGGAAGTTTAAAGATGATGGAATTTACTTGAGACACAATTCAGCTAATACGGATGAATTGGTTCATACTTGGATCAATATGTGATAAACAACCTTTATTAATTTATTTTGTTCTTGAGTTATTCACACTCATCAACAAATGAAAATGTATACCAAGGTTGAAGTGAATGAAAAGAATAAGTTGGGTAACCCTTGTTGATAGTTCGTTTTATTTATTTATTTATTTATTTTTTCTCTAAAACTTAAAATTAATGACAAAATTTTCCTAACTTTTAATTCATTTGTAGATACAGTAA

mRNA sequence

ATGATAAGGAATGTGGCTGCATTGTTTCTCGTGATGGTAGGTTTGGTCGGGGCTCAGCTTGAAGTTGAGTCTGAGAAGATCAATGTAGAGCCTCCGCGAATATCCAGTTATAACATTCATTTGGTTAACGATCTACAAGTCCTTGGTATAACGGTGCACTGCAAGTCAAAGGATGATGATTTGGGAGTTCATAATTTGCCTCATCGGGGAGATGATTACCATTTTAGTTTTAAGATTAATATACAGTAA

Coding sequence (CDS)

ATGATAAGGAATGTGGCTGCATTGTTTCTCGTGATGGTAGGTTTGGTCGGGGCTCAGCTTGAAGTTGAGTCTGAGAAGATCAATGTAGAGCCTCCGCGAATATCCAGTTATAACATTCATTTGGTTAACGATCTACAAGTCCTTGGTATAACGGTGCACTGCAAGTCAAAGGATGATGATTTGGGAGTTCATAATTTGCCTCATCGGGGAGATGATTACCATTTTAGTTTTAAGATTAATATACAGTAA

Homology

[Close]

BLAST of CmoCh17G012100 vs. NCBI nr
Match: gi|449443925|ref|XP_004139726.1| (PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60
          MIRNV   +   + LVGA     +  + V P R   Y +H+VN L    + VHC+SKD+D
Sbjct: 1  MIRNVVVFWFATLALVGADRIPRTPFVPVNPAR---YYVHVVNGLSNYDLGVHCQSKDND 60

Query: 61 LGVHNLPHRGDDYHFSFKINI 82
          LG  +L +RGDD+ ++FK+NI
Sbjct: 61 LGYQHLINRGDDFQWNFKVNI 78

[Close]

BLAST of CmoCh17G012100 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 26 KINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDDLGVHNLPHRGDDYHFSFKIN 81
          ++ + PP ++ Y IH++N L    + VHC+SKDDDLG H+L +RGDDY ++FK N
Sbjct: 11 RMTLPPPSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKEN 65

[Close]

BLAST of CmoCh17G012100 vs. NCBI nr
Match: gi|659124361|ref|XP_008462118.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-08
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60
          M+RNV  L+L    LVGAQ              + S+++ +VN+L  L + VHC+SK+DD
Sbjct: 7  MMRNVVVLWLATAALVGAQ--------------VPSWSVSIVNELSHLDLNVHCRSKNDD 66

Query: 61 LGVHNLPHRGDDYHFSFKIN 81
          LG H+L  RGD Y +SFK N
Sbjct: 67 LGNHHLVKRGDIYKWSFKEN 72

[Close]

BLAST of CmoCh17G012100 vs. NCBI nr
Match: gi|659124351|ref|XP_008462113.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60
          M+RN+  L+L  V +VGAQL           PR   +++ +VN L  LG+ VHC+S +DD
Sbjct: 9  MMRNMIVLWLATVAMVGAQL-----------PR---WSVRMVNGLSYLGLDVHCQSGNDD 68

Query: 61 LGVHNLPHRGDDYHFSFKIN 81
          LG H L +RGDD+ +SF+ N
Sbjct: 69 LGYHYLVNRGDDFKWSFQEN 74

[Close]

BLAST of CmoCh17G012100 vs. NCBI nr
Match: gi|659124363|ref|XP_008462119.1| (PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60
          M+RNV  L+L+M   V      +   I V P R   Y IH+ NDL    + VHC+SKDDD
Sbjct: 2  MMRNVVVLWLLMATWVAEAQISKDVVIRVPPVR---YFIHVANDLTNQDMFVHCQSKDDD 61

Query: 61 LGVHNLPHRGDDYHFSFKIN 81
          L + +L HRGD++ ++FK N
Sbjct: 62 LRIQHLVHRGDEFRWNFKEN 78

The following BLAST results are available for this feature:

BLAST of CmoCh17G012100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012100 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443925\|ref\|XP_004139726.1\|	4.6e-09	43.21	PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus]	[more]
gi\|659116532\|ref\|XP_008458117.1\|	1.3e-08	49.09	PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo]	[more]
gi\|659124361\|ref\|XP_008462118.1\|	6.6e-08	43.75	PREDICTED: pumilio homolog 15-like [Cucumis melo]	[more]
gi\|659124351\|ref\|XP_008462113.1\|	1.1e-07	43.75	PREDICTED: pumilio homolog 15-like [Cucumis melo]	[more]
gi\|659124363\|ref\|XP_008462119.1\|	1.5e-07	43.75	PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012100.1	CmoCh17G012100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 39..81 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012100	Wax gourd	cmowgoB0492
CmoCh17G012100	Cucurbita moschata (Rifu)	cmocmoB316
CmoCh17G012100	Cucumber (Gy14) v1	cgycmoB0134
CmoCh17G012100	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012100	Cucurbita maxima (Rimu)	cmacmoB892
CmoCh17G012100	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012100	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012100	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012100	Watermelon (97103) v1	cmowmB325
CmoCh17G012100	Watermelon (97103) v1	cmowmB339
CmoCh17G012100	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012100	Cucurbita pepo (Zucchini)	cmocpeB348
CmoCh17G012100	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012100	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012100	Silver-seed gourd	carcmoB0115
CmoCh17G012100	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012100	Watermelon (97103) v2	cmowmbB373