CmoCh17G012080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA binding protein, putative
LocationCmo_Chr17 : 9684046 .. 9684985 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAGTTAATATTTGGAAAACAACTCTTTTTTGGTGCAGAGTGGACAGGCCGAATGCATATATCTCTTTCGACTGCTTTTGGCCTGAGAAAAAGAGCTCATGGCTTCGTGATAGATGCAAAAATGGAGATATAGGAACTTGTATATGGAAGTTTAAAGATGATGGAATTTACTTGAGATTCAATGCAGCTAATACCGAAGAATTGGTTCATAAATGGATCATTACGAGATAAAGAACAGAACCTTTATTATTAATTCATATTGTTCTTGAGTTATCCATGAACATATGAAAAAGTACACTATCATTTGAAATGATAGTTTAATGAAGAAAATAAGTTGGGTGACCCTATTTGATTGTTTTTTTTTTTTATACAAATATATTTCATAACTAATTCTCGGGAATTTAAAATTAATAACAAAAATTGCCAAATTTTAATTCATTTGTTGAAAAATGATCAAATACCTTTATAGGTTGACTTTGACAATAAATTTTGTATTATACTAATTGATTGTCAGAAATATTGATGTTTTTGTTGCTAACTTAGAGGTAAGTTTTGAAAATTAATGAAATTTGTGGTTAACACGTCACTCCTTACAAGTTTGTACACATGCTTTTAGAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG

mRNA sequence

ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG

Coding sequence (CDS)

ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG
Homology
[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: gi|449443921|ref|XP_004139724.1| (PREDICTED: uncharacterized protein LOC101205731 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 11 LTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHL-RKGE 70
          +T  LV A++++ S K  I+LP  +Y+IH+ NDL+  DM+ HCQS+DDDLGI HL  +G+
Sbjct: 1  MTATLV-AEAQI-SNKVVIRLPPVRYFIHVANDLTNQDMSAHCQSKDDDLGIQHLVHRGD 60

Query: 71 DYQFNFK 77
          ++++NFK
Sbjct: 61 EFRWNFK 65

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 33 ISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHL-RKGEDYQFNFK 77
          +++YYIH++N LS  D+ +HCQS+DDDLG HHL  +G+DYQ+NFK
Sbjct: 19 VTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFK 63

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: gi|659124363|ref|XP_008462119.1| (PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          M+RNV  L LL    V A++++ S+   I++P  +Y+IH+ NDL+  DM +HCQS+DDDL
Sbjct: 2  MMRNVVVLWLLMATWV-AEAQI-SKDVVIRVPPVRYFIHVANDLTNQDMFVHCQSKDDDL 61

Query: 61 GIHHL-RKGEDYQFNFK 77
           I HL  +G+++++NFK
Sbjct: 62 RIQHLVHRGDEFRWNFK 76

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: gi|449443925|ref|XP_004139726.1| (PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPIS--KYYIHLINDLSIPDMTLHCQSRDD 60
          MIRNV      T+ LVGA    +    T  +P++  +YY+H++N LS  D+ +HCQS+D+
Sbjct: 1  MIRNVVVFWFATLALVGA----DRIPRTPFVPVNPARYYVHVVNGLSNYDLGVHCQSKDN 60

Query: 61 DLGIHHL-RKGEDYQFNFK 77
          DLG  HL  +G+D+Q+NFK
Sbjct: 61 DLGYQHLINRGDDFQWNFK 75

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 22/44 (50.00%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 34 SKYYIHLINDLSIPDMTLHCQSRDDDLGIHHL-RKGEDYQFNFK 77
          S+Y++H++N LS   + +HCQS++DDLG HHL  +G++YQ+NF+
Sbjct: 19 SRYFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFE 62

The following BLAST results are available for this feature:
BLAST of CmoCh17G012080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012080 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443921|ref|XP_004139724.1|3.0e-0849.25PREDICTED: uncharacterized protein LOC101205731 [Cucumis sativus][more]
gi|659116532|ref|XP_008458117.1|3.9e-0860.00PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo][more]
gi|659124363|ref|XP_008462119.1|8.7e-0845.45PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo][more]
gi|449443925|ref|XP_004139726.1|1.5e-0744.30PREDICTED: uncharacterized protein LOC101206205 [Cucumis sativus][more]
gi|659124355|ref|XP_008462115.1|8.1e-0650.00PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012080.1CmoCh17G012080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 38..77
score: 5.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G012080Lsi02G020490Bottle gourd (USVL1VR-Ls)cmolsiB334
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012080Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012080Watermelon (97103) v2cmowmbB373
CmoCh17G012080Wax gourdcmowgoB0492
CmoCh17G012080Cucurbita moschata (Rifu)cmocmoB316
CmoCh17G012080Cucumber (Gy14) v1cgycmoB0134
CmoCh17G012080Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012080Cucurbita maxima (Rimu)cmacmoB892
CmoCh17G012080Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012080Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012080Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012080Watermelon (97103) v1cmowmB325
CmoCh17G012080Watermelon (97103) v1cmowmB339
CmoCh17G012080Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012080Cucurbita pepo (Zucchini)cmocpeB348
CmoCh17G012080Cucumber (Gy14) v2cgybcmoB903
CmoCh17G012080Silver-seed gourdcarcmoB0115